View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19073_low_31 (Length: 250)
Name: NF19073_low_31
Description: NF19073
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19073_low_31 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 128; Significance: 3e-66; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 91 - 234
Target Start/End: Complemental strand, 34897727 - 34897584
Alignment:
| Q |
91 |
aagatttgttcaccaaagatcaatcataactgaaatctctttcactttcaactaccatcaaacatgaattttaacttgatcaataacggattcaaaaccc |
190 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| ||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
34897727 |
aagatttgttcaccaaagatcaatcataactgaaatctctttcactttcaaccaccaccaaatatgaattttaacttgatcaataacggattcaaagccc |
34897628 |
T |
|
| Q |
191 |
aaaccttacatatattgttgagcttgggtaataacatcattttt |
234 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34897627 |
aaaccttacatatattgttgagcttgggtaataacatcattttt |
34897584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 10 - 97
Target Start/End: Complemental strand, 34898800 - 34898713
Alignment:
| Q |
10 |
attattctctatagttgattttatataattttattgtattttgtagtgagtttttagcgataaaattacatcctattgcataagattt |
97 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
34898800 |
attattctctatagttgattttatataattttattgtattttgtagtgagtttttagtgataaaattacatcctattgcataagattt |
34898713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University