View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19073_low_33 (Length: 238)
Name: NF19073_low_33
Description: NF19073
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19073_low_33 |
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Alignment Details
Target: chr5 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 19 - 231
Target Start/End: Complemental strand, 7754511 - 7754303
Alignment:
| Q |
19 |
actattgtttttactgttatataatatgtaattttcgtaaacttatatgtaggactcgtcgtttttgtttatgggaaggtttttagaaggttttggcgtc |
118 |
Q |
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| T |
7754511 |
actattgtttttactgttatataatatgtaattttcgtaaacttatatgtaggactcgtcgtttttgtttatggggaggtttttagaaggttttggcgtc |
7754412 |
T |
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| Q |
119 |
gggataatctcttatgtggttggtaatcttcaatttgattgtgttagataatatattatatcgaagatagtttagtcttttgtgagattctggttattcg |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
7754411 |
gggataatctcttatgtggttggtaatcttcaatttgattgtgt----taatatattatatcgaagatagtttagtcttttgtgtgattctggttattcg |
7754316 |
T |
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| Q |
219 |
gttatgttttctt |
231 |
Q |
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||||||||||||| |
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| T |
7754315 |
gttatgttttctt |
7754303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 129 - 231
Target Start/End: Original strand, 26191350 - 26191451
Alignment:
| Q |
129 |
cttatgtggttggtaatcttcaatttgattgtgttagataatatattatatcgaagatagtttagtcttttgtgagattctggttattcggttatgtttt |
228 |
Q |
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| T |
26191350 |
cttatgtggttggtaatcttcaatttgattgtgttagataatatattatatcgaagatag-ttagtcttttgtgtgattttgattactcaggtatgtttt |
26191448 |
T |
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| Q |
229 |
ctt |
231 |
Q |
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||| |
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| T |
26191449 |
ctt |
26191451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 68 - 138
Target Start/End: Original strand, 32928492 - 32928562
Alignment:
| Q |
68 |
taggactcgtcgtttttgtttatgggaaggtttttagaaggttttggcgtcgggataatctcttatgtggt |
138 |
Q |
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| T |
32928492 |
taggactcttcctttttgtttatggggagactgttggaaggttttggcgttgggattatctcttatgtggt |
32928562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 68 - 138
Target Start/End: Original strand, 32935616 - 32935686
Alignment:
| Q |
68 |
taggactcgtcgtttttgtttatgggaaggtttttagaaggttttggcgtcgggataatctcttatgtggt |
138 |
Q |
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| T |
32935616 |
taggactcgtcgcttctatatatgggaaggttgttggaaggttttggagtggggataatatcttatgtggt |
32935686 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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