View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19073_low_34 (Length: 238)
Name: NF19073_low_34
Description: NF19073
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19073_low_34 |
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| [»] scaffold0955 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 198; Significance: 1e-108; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 6145559 - 6145780
Alignment:
| Q |
1 |
caacctgcccaaaaagttctctgcaatggagtatgtgcaggagttcatccaaacaccactttgaagttgcatactcttttgagaaaactacaatagacat |
100 |
Q |
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| T |
6145559 |
caacctgcccaaaaagttctctgcaatggagtatttgcaggagttcatccaaacaccactttgaagttgcatagtcttttgagaaaactacaatagacat |
6145658 |
T |
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| Q |
101 |
atgcgagtctttgattgcttcggcaagagcaggtccaacttcatctcccttaacaagattgtaatcaatgtatgattcgatacttctatcggtaagagct |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| | ||||||||||||||||||||||||||||||||||||||| |
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| T |
6145659 |
atgcgagtctttgattgcttcggcaagagcaggtccaacctcatctcctttaacaagactataatcaatgtatgattcgatacttctatcggtaagagct |
6145758 |
T |
|
| Q |
201 |
cgatgaagctgggcagtgaagt |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
6145759 |
cgatgaagctgggcagtgaagt |
6145780 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 14 - 222
Target Start/End: Original strand, 6188606 - 6188814
Alignment:
| Q |
14 |
aagttctctgcaatggagtatgtgcaggagttcatccaaacaccactttgaagttgcatactcttttgagaaaactacaatagacatatgcgagtctttg |
113 |
Q |
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||||| |||||| || |||||||| | |||||||||||| |||||||||||||||||||| ||||||||||||||||||| ||||||||| ||||| | |
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| T |
6188606 |
aagttttctgcattgaagtatgtggacgagttcatccaagcaccactttgaagttgcatagtcttttgagaaaactacaagagacatatgtgagtcatca |
6188705 |
T |
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| Q |
114 |
attgcttcggcaagagcaggtccaacttcatctcccttaacaagattgtaatcaatgtatgattcgatacttctatcggtaagagctcgatgaagctggg |
213 |
Q |
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| T |
6188706 |
attgctttggtaagagcaggtccaacctcatcacctttaacaagattgtaatcaatgtatgattcgatacttctatcgctaagagcttgatgaagctggg |
6188805 |
T |
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| Q |
214 |
cagtgaagt |
222 |
Q |
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||||||||| |
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| T |
6188806 |
cagtgaagt |
6188814 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 20 - 222
Target Start/End: Original strand, 6179838 - 6180040
Alignment:
| Q |
20 |
tctgcaatggagtatgtgcaggagttcatccaaacaccactttgaagttgcatactcttttgagaaaactacaatagacatatgcgagtctttgattgct |
119 |
Q |
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|||||| || ||||| || |||||||||||||| ||||||||||| |||||||| | || |||||||||||||| ||||||||| || |||| ||||||| |
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| T |
6179838 |
tctgcattgtagtatatggaggagttcatccaagcaccactttgaggttgcatagttttctgagaaaactacaagagacatatgtgaatcttggattgct |
6179937 |
T |
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| Q |
120 |
tcggcaagagcaggtccaacttcatctcccttaacaagattgtaatcaatgtatgattcgatacttctatcggtaagagctcgatgaagctgggcagtga |
219 |
Q |
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| T |
6179938 |
ttagcaagagcaggtccaacttcatcacccttaacgagactataatcgatgtatgattcgatactactatcggtaagagctcgatgaagctgggcagtga |
6180037 |
T |
|
| Q |
220 |
agt |
222 |
Q |
| |
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||| |
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| T |
6180038 |
agt |
6180040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 39 - 174
Target Start/End: Original strand, 6047226 - 6047361
Alignment:
| Q |
39 |
aggagttcatccaaacaccactttgaagttgcatactcttttgagaaaactacaatagacatatgcgagtctttgattgcttcggcaagagcaggtccaa |
138 |
Q |
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|||||||||| ||| ||||||||||| |||||||| | ||| ||||| || |||| ||| || | ||||||| ||||||||| ||||| || |||| |
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| T |
6047226 |
aggagttcattcaagcaccactttgaggttgcataatttttggagaatacaacaagagatatgcgtgagtcttggattgcttcagcaagtgcttcaccaa |
6047325 |
T |
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| Q |
139 |
cttcatctcccttaacaagattgtaatcaatgtatg |
174 |
Q |
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| T |
6047326 |
tttcatctcccttcacaagattatcatcaatgtatg |
6047361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 88
Target Start/End: Complemental strand, 25692162 - 25692118
Alignment:
| Q |
44 |
ttcatccaaacaccactttgaagttgcatactcttttgagaaaac |
88 |
Q |
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| T |
25692162 |
ttcatccaaacaccattttgaagttgcatagttttttgaaaaaac |
25692118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0955 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0955
Description:
Target: scaffold0955; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 88
Target Start/End: Complemental strand, 3172 - 3128
Alignment:
| Q |
44 |
ttcatccaaacaccactttgaagttgcatactcttttgagaaaac |
88 |
Q |
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| T |
3172 |
ttcatccaaacaccattttgaagttgcatagttttttgaaaaaac |
3128 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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