View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19073_low_36 (Length: 223)
Name: NF19073_low_36
Description: NF19073
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19073_low_36 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 32547175 - 32547397
Alignment:
| Q |
1 |
tttcttataaccttggtcttcatggctctctaccaaactttccacatcaaggatctttgcacaacttgaatcttagccatacaaatttttcaggaccaat |
100 |
Q |
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| T |
32547175 |
tttcttataaccttggtcttcatggctctctaccaaactttccacatcaaggatctttgcacaacttgaatcttagccatacaaatttttcaggaccaat |
32547274 |
T |
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| Q |
101 |
tccaaattctattcacaatttgaggcaattgtctacattagatctatcaaattgtcaatttaatggcacacttcctagttcaatgtctcatcttacaaat |
200 |
Q |
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| T |
32547275 |
tccagattctattcacaatttgaggcaattgtctacattagatctatcaaattgtcaatttaatggtacacttcctagttcaatgtctcatcttacaaat |
32547374 |
T |
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| Q |
201 |
cttgttcatctagatttgtcatt |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
32547375 |
cttgttcatctagatttgtcatt |
32547397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 64 - 187
Target Start/End: Original strand, 5353023 - 5353146
Alignment:
| Q |
64 |
acttgaatcttagccatacaaatttttcaggaccaattccaaattctattcacaatttgaggcaattgtctacattagatctatcaaattgtcaatttaa |
163 |
Q |
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|||||||||| |||||||||||||| |||||| | ||||||||||| || |||| ||| ||| |||||||| | |||||||| | |||||||| || |
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| T |
5353023 |
acttgaatctaagccatacaaatttctcaggatcgcttccaaattctttttccaatctgaagcatttgtctactattgatctatcttactgtcaattcaa |
5353122 |
T |
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| Q |
164 |
tggcacacttcctagttcaatgtc |
187 |
Q |
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| T |
5353123 |
tggaacacttcctagatcaatgtc |
5353146 |
T |
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