View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19073_low_40 (Length: 205)
Name: NF19073_low_40
Description: NF19073
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19073_low_40 |
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Alignment Details
Target: chr4 (Bit Score: 159; Significance: 7e-85; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 159; E-Value: 7e-85
Query Start/End: Original strand, 18 - 188
Target Start/End: Original strand, 3283528 - 3283698
Alignment:
| Q |
18 |
agaaagcacataaaaagtaagagatattactgtcatagaaaatctctgatttttgcctaataattactattttgatcaatatacatcaatttatggttct |
117 |
Q |
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| T |
3283528 |
agaaagcacataaaaagtaagagataatactgtcatagaaaatctctgatttttgcttaataattactattttgatcaatatacatcaatttatggttct |
3283627 |
T |
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| Q |
118 |
aggttcgattccttgaacctaatttctagaaatgcaggcaaacagacacgatgggagttgacctaaatatt |
188 |
Q |
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| T |
3283628 |
aggttcgattccttgaacctaatttctagaaatgcaggcaaacagacacgatgggagttgacccaaatatt |
3283698 |
T |
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Target: chr2 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 48 - 90
Target Start/End: Original strand, 18633945 - 18633987
Alignment:
| Q |
48 |
tgtcatagaaaatctctgatttttgcctaataattactatttt |
90 |
Q |
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| T |
18633945 |
tgtcatagaaaaactctgatttttgcctaataattactatttt |
18633987 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 90
Target Start/End: Original strand, 1175598 - 1175640
Alignment:
| Q |
48 |
tgtcatagaaaatctctgatttttgcctaataattactatttt |
90 |
Q |
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| T |
1175598 |
tgtcatagaaaaactctgaattttgcctaatacttactatttt |
1175640 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 97 - 142
Target Start/End: Original strand, 4701258 - 4701303
Alignment:
| Q |
97 |
tatacatcaatttatggttctaggttcgattccttgaacctaattt |
142 |
Q |
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| T |
4701258 |
tatacatcaagttatggttctaggtttgattccttaaacttaattt |
4701303 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 97 - 133
Target Start/End: Original strand, 1175744 - 1175780
Alignment:
| Q |
97 |
tatacatcaatttatggttctaggttcgattccttga |
133 |
Q |
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| T |
1175744 |
tatacatcaatttatagttctaggttcgattacttga |
1175780 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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