View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19073_low_5 (Length: 549)
Name: NF19073_low_5
Description: NF19073
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19073_low_5 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 328; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 8 - 363
Target Start/End: Complemental strand, 34698044 - 34697689
Alignment:
| Q |
8 |
agagatgaagagagcgaggatggttgtgctaaatgacgcagaatcatgttgcggtgaaagtgaagaagcaagagctgaaaagcgcatgagaagcgacgac |
107 |
Q |
| |
|
||||| ||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34698044 |
agagaagaagagagcaaggatggttgtgctaaatgacgcggaatcatgttgcggtgaaagtgaagaagcaagagctgaaaagcgcatgagaagcgacgac |
34697945 |
T |
|
| Q |
108 |
aatttgaagttttgttcaaagtgtaagacaaactttgttggtgtcttatttcttccatgtaggcatctatctttatgcaaacaatgtgaagctttattcc |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
34697944 |
aatttgaagttttgttcaaagtgtaagacaaactttgttggtgtcttatttcttccatgtaggcatctatctttatgcaaacaatgtgaagctttactcc |
34697845 |
T |
|
| Q |
208 |
aaacttgtccaatatgtggaatggcaaagaaggatgttattgagatccagagttcaatttcatattgatttgggaaaaatcaatattttagcttatctat |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
34697844 |
aaacttgtccaatatgtggaatggcaaagaaggatgttattgagatccagagttcaatttcatattgatttggcgaaaatcaatattttagcttatctat |
34697745 |
T |
|
| Q |
308 |
cctaagaaaaagtatgaggagagtaatggtgatctaaataatatttctaaaattac |
363 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
34697744 |
cctaagaaaaagtatgaggagagtaatggtgatctaaatgatatttctaaaattac |
34697689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 8 - 363
Target Start/End: Complemental strand, 34720456 - 34720101
Alignment:
| Q |
8 |
agagatgaagagagcgaggatggttgtgctaaatgacgcagaatcatgttgcggtgaaagtgaagaagcaagagctgaaaagcgcatgagaagcgacgac |
107 |
Q |
| |
|
||||| ||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34720456 |
agagaagaagagagcaaggatggttgtgctaaatgacgcggaatcatgttgcggtgaaagtgaagaagcaagagctgaaaagcgcatgagaagcgacgac |
34720357 |
T |
|
| Q |
108 |
aatttgaagttttgttcaaagtgtaagacaaactttgttggtgtcttatttcttccatgtaggcatctatctttatgcaaacaatgtgaagctttattcc |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
34720356 |
aatttgaagttttgttcaaagtgtaagacaaactttgttggtgtcttatttcttccatgtaggcatctatctttatgcaaacaatgtgaagctttactcc |
34720257 |
T |
|
| Q |
208 |
aaacttgtccaatatgtggaatggcaaagaaggatgttattgagatccagagttcaatttcatattgatttgggaaaaatcaatattttagcttatctat |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
34720256 |
aaacttgtccaatatgtggaatggcaaagaaggatgttattgagatccagagttcaatttcatattgatttggcgaaaatcaatattttagcttatctat |
34720157 |
T |
|
| Q |
308 |
cctaagaaaaagtatgaggagagtaatggtgatctaaataatatttctaaaattac |
363 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
34720156 |
cctaagaaaaagtatgaggagagtaatggtgatctaaatgatatttctaaaattac |
34720101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 429 - 534
Target Start/End: Complemental strand, 34697623 - 34697518
Alignment:
| Q |
429 |
atcaatacaataatgttattttgtttcaatctctatttatttagatgccatttatatttaaaaaggtaattaatacttttttgactcaataagaccagga |
528 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34697623 |
atcaatacaataatgttattttgtttcaatctctatttatttagatgccatttatatttaaaaaggtaattaatacttttttgactcaataagaccagga |
34697524 |
T |
|
| Q |
529 |
gaaatt |
534 |
Q |
| |
|
|||||| |
|
|
| T |
34697523 |
gaaatt |
34697518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 429 - 534
Target Start/End: Complemental strand, 34720035 - 34719930
Alignment:
| Q |
429 |
atcaatacaataatgttattttgtttcaatctctatttatttagatgccatttatatttaaaaaggtaattaatacttttttgactcaataagaccagga |
528 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34720035 |
atcaatacaataatgttattttgtttcaatctctatttatttagatgccatttatatttaaaaaggtaattaatacttttttgactcaataagaccagga |
34719936 |
T |
|
| Q |
529 |
gaaatt |
534 |
Q |
| |
|
|||||| |
|
|
| T |
34719935 |
gaaatt |
34719930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 192 - 269
Target Start/End: Complemental strand, 27909992 - 27909915
Alignment:
| Q |
192 |
tgtgaagctttattccaaacttgtccaatatgtggaatggcaaagaaggatgttattgagatccagagttcaatttca |
269 |
Q |
| |
|
|||||||||||| || || |||||||||||||||||||| ||||||||||||||||||||| ||||||| ||||||| |
|
|
| T |
27909992 |
tgtgaagctttactcgaagtttgtccaatatgtggaatggaaaagaaggatgttattgagattcagagtttaatttca |
27909915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 86; Significance: 7e-41; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 9 - 276
Target Start/End: Complemental strand, 27637799 - 27637535
Alignment:
| Q |
9 |
gagatgaagagagcgaggatggttgtgctaaatgacgcagaatcatgttgcggtgaaagtgaagaagcaagagctgaaaagcgcatgagaagcgacgaca |
108 |
Q |
| |
|
|||| |||||||| |||||| | ||| ||||||||| |||||| |||| ||||||| ||||||| |||||||||||||| | ||| | || ||| |
|
|
| T |
27637799 |
gagaagaagagagtaaggatgttggtggaaaatgacgcggaatcaagttgtggtgaaaaggaagaagtcagagctgaaaagcgtgtaagacgtgaaaaca |
27637700 |
T |
|
| Q |
109 |
atttgaagttttgttcaaagtgtaagacaaactttgttggtgtcttatttcttccatgtaggcatctatctttatgcaaacaatgtgaagctttattcca |
208 |
Q |
| |
|
|| || |||||||||||||||||||||||| | |||||||||||||||| |||||||||||||| |||| ||||||| |||| | |||||| |||| |
|
|
| T |
27637699 |
atgtg---ttttgttcaaagtgtaagacaaacactcttggtgtcttatttctgccatgtaggcatctctcttcatgcaaagcatgtaatgctttactcca |
27637603 |
T |
|
| Q |
209 |
aacttgtccaatatgtggaatggcaaagaaggatgttattgagatccagagttcaatttcatattgat |
276 |
Q |
| |
|
|||||||||||| ||||||||||||||||||| | |||| ||||| |||| ||| |||| | |||||| |
|
|
| T |
27637602 |
aacttgtccaatttgtggaatggcaaagaagggtattatcgagattcagaattcgatttaaaattgat |
27637535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 116 - 253
Target Start/End: Complemental strand, 37353888 - 37353751
Alignment:
| Q |
116 |
gttttgttcaaagtgtaagacaaactttgttggtgtcttatttcttccatgtaggcatctatctttatgcaaacaatgtgaagctttattccaaacttgt |
215 |
Q |
| |
|
|||||||||||||| ||||||| || | ||||||||||| ||||||||||||||||||| |||| ||||||| |||| | |||||| ||||||||||| |
|
|
| T |
37353888 |
gttttgttcaaagtataagacacacactcttggtgtcttagttcttccatgtaggcatctctcttcatgcaaagcatgtaatgctttactccaaacttgt |
37353789 |
T |
|
| Q |
216 |
ccaatatgtggaatggcaaagaaggatgttattgagat |
253 |
Q |
| |
|
||||| ||||||||||||||||||| | |||| ||||| |
|
|
| T |
37353788 |
ccaatctgtggaatggcaaagaagggtattatcgagat |
37353751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 116 - 253
Target Start/End: Complemental strand, 37365862 - 37365725
Alignment:
| Q |
116 |
gttttgttcaaagtgtaagacaaactttgttggtgtcttatttcttccatgtaggcatctatctttatgcaaacaatgtgaagctttattccaaacttgt |
215 |
Q |
| |
|
|||||||||||||| ||||||| || | ||||||||||| ||||||||||||||||||| |||| ||||||| |||| | |||||| ||||||||||| |
|
|
| T |
37365862 |
gttttgttcaaagtataagacacacactcttggtgtcttagttcttccatgtaggcatctctcttcatgcaaagcatgtaatgctttactccaaacttgt |
37365763 |
T |
|
| Q |
216 |
ccaatatgtggaatggcaaagaaggatgttattgagat |
253 |
Q |
| |
|
||||| ||||||||||||||||||| | |||| ||||| |
|
|
| T |
37365762 |
ccaatctgtggaatggcaaagaagggtattatcgagat |
37365725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 116 - 258
Target Start/End: Original strand, 12292529 - 12292671
Alignment:
| Q |
116 |
gttttgttcaaagtgtaagacaaactttgttggtgtcttatttcttccatgtaggcatctatctttatgcaaacaatgtgaagctttattccaaacttgt |
215 |
Q |
| |
|
||||||| |||||||||| ||||||| | |||||||||| | |||||||||||||| |||| ||||||| ||||||||||||| || || | ||| |
|
|
| T |
12292529 |
gttttgtccaaagtgtaacacaaactcctcagatgtcttatttataccatgtaggcatctttcttcatgcaaagcatgtgaagctttactcgaagcctgt |
12292628 |
T |
|
| Q |
216 |
ccaatatgtggaatggcaaagaaggatgttattgagatccaga |
258 |
Q |
| |
|
||||| ||||||||| |||||||| |||||||||||| |||| |
|
|
| T |
12292629 |
ccaatgtgtggaatgaaaaagaagggtgttattgagattcaga |
12292671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 149 - 269
Target Start/End: Original strand, 12242822 - 12242942
Alignment:
| Q |
149 |
tgtcttatttcttccatgtaggcatctatctttatgcaaacaatgtgaagctttattccaaacttgtccaatatgtggaatggcaaagaaggatgttatt |
248 |
Q |
| |
|
|||||||||||| |||||||| ||||| |||| ||||||| |||||||||| | || || |||||||||| |||||||||| |||||| | ||||||| |
|
|
| T |
12242822 |
tgtcttatttctgccatgtagacatctttcttcatgcaaagcgtgtgaagcttcactcaaagcttgtccaatctgtggaatggaaaagaatggtgttatt |
12242921 |
T |
|
| Q |
249 |
gagatccagagttcaatttca |
269 |
Q |
| |
|
|| || || |||| ||||||| |
|
|
| T |
12242922 |
gaaattcatagtttaatttca |
12242942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University