View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19073_low_7 (Length: 517)
Name: NF19073_low_7
Description: NF19073
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19073_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 348; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 12 - 499
Target Start/End: Complemental strand, 39075758 - 39075274
Alignment:
| Q |
12 |
atgaagcacaaaatcaacaatgtgaagtttcgtctcatcgaatcttccactttagtaaggaacaaattctgcaactcaaatcaaaagctaatgcagaaat |
111 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39075758 |
atgaagcacaaaatcaacaatgtgaagttttgtctcatcgaatcttccactttagtaaggaacaaattctgcaactcaaatcaaaagctaatgcagaaat |
39075659 |
T |
|
| Q |
112 |
ccnnnnnnnnnnnnnnnnnnnngagaaaataataatatcttcactgcaagcgcttttaagtcacgtttggcgtttaattataagtaaacaaaatcttaaa |
211 |
Q |
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| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39075658 |
c---agtagtagtaatagtagtgagaaaataataatatcttcattgcaagcgcttttaagtcacgtttggcgtttaattataagtaaacaaaatcttaaa |
39075562 |
T |
|
| Q |
212 |
ccagaagaaaggtctgctttcgtgttacccatagattgtaggacaagaatgtgtccaaagttagaagagaattattttggaagtggaatcggagcaactg |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
39075561 |
ccagaagaaaggtctgctttcgtgttacccatagattgtaggacaagaatgtgtccaaagttagaagataattattttggaagtggaatcggagcaactg |
39075462 |
T |
|
| Q |
312 |
ggtatgtaataatgaaagtaggggaattaatggaaagtgggattggtaaaattgcaatggaaatgaataaggagatttcatcaaaatctcatcatgaaaa |
411 |
Q |
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| |||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| ||| || | ||||||||||||| || |
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| T |
39075461 |
gatatgtaataatgcaagtaggggaattaatggaaagtgggattggtaaaattgctatggaaatgaacaaggtgatatctatacaatctcatcatgagaa |
39075362 |
T |
|
| Q |
412 |
gttagtgagtaattatgagtcttggttgaaaaccccgtctatatcggaggcaggtagatcatcaagtaatttgttgatagcaagcagt |
499 |
Q |
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| T |
39075361 |
ggtagtgaataactatgagtcttggttgaaaaccccgtctataccggaggcaggtagatcatcaagtaatttgttgatagcaagcagt |
39075274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 146 - 499
Target Start/End: Complemental strand, 7398876 - 7398523
Alignment:
| Q |
146 |
atatcttcactgcaagcgcttttaagtcacgtttggcgtttaattataagtaaacaaaatcttaaaccagaagaaaggtctgctttcgtgttacccatag |
245 |
Q |
| |
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||||||||| |||||||||||||||||||| ||||||||||| |||||||||||||||||| ||| ||||||||||||| || |||||||||||||||| |
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| T |
7398876 |
atatcttcattgcaagcgcttttaagtcacctttggcgtttatttataagtaaacaaaatcgtaattcagaagaaaggtcggcattcgtgttacccatag |
7398777 |
T |
|
| Q |
246 |
attgtaggacaagaatgtgtccaaagttagaagagaattattttggaagtggaatcggagcaactgggtatgtaataatgaaagtaggggaattaatgga |
345 |
Q |
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||||||| ||||||||||| |||||||||||||||||||||||||| | ||||||||||||| ||| | |||||||||| || ||||||| |||||||| |
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| T |
7398776 |
attgtagaacaagaatgtgcccaaagttagaagagaattattttgggaatggaatcggagcagttggatgtgtaataatgcaaataggggagttaatgga |
7398677 |
T |
|
| Q |
346 |
aagtgggattggtaaaattgcaatggaaatgaataaggagatttcatcaaaatctcatcatgaaaagttagtgagtaattatgagtcttggttgaaaacc |
445 |
Q |
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||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| ||| || ||||| || ||| |||||||||||||| |
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| T |
7398676 |
aagtgggattggtaaaattgctatggaaatgaacaaggagatttcatcaaaatctcatcatgagaagataatgagtgatattgaatcttggttgaaaacg |
7398577 |
T |
|
| Q |
446 |
ccgtctatatcggaggcaggtagatcatcaagtaatttgttgatagcaagcagt |
499 |
Q |
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||||| ||| ||| ||| || |||| |||||||||||||||||||||||||| |
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| T |
7398576 |
ccgtcgatactagagccagttaaatcagcaagtaatttgttgatagcaagcagt |
7398523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 17 - 111
Target Start/End: Complemental strand, 7399011 - 7398917
Alignment:
| Q |
17 |
gcacaaaatcaacaatgtgaagtttcgtctcatcgaatcttccactttagtaaggaacaaattctgcaactcaaatcaaaagctaatgcagaaat |
111 |
Q |
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|||||||||||||||||||| ||||||||| |||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
7399011 |
gcacaaaatcaacaatgtgatgtttcgtctaatcgaatcttccactttactaaagaacaaattctgcaactcaaatcaaaagctaatgcagaaat |
7398917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 110; Significance: 3e-55; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 45 - 444
Target Start/End: Complemental strand, 34174625 - 34174226
Alignment:
| Q |
45 |
ctcatcgaatcttccactttagtaaggaacaaattctgcaactcaaatcaaaagctaatgcagaaatccnnnnnnnnnnnnnnnnnnnngagaaaataat |
144 |
Q |
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||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| || |||||||| |
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| T |
34174625 |
ctcatcgaatcttccacttcacaaaggaacaaattctgcaactcaaatcaaaagctaatgcagaaat---tagtagtagttgcggtggtgataaaataat |
34174529 |
T |
|
| Q |
145 |
aatatcttcactgcaagcgcttttaagtcacgtttggcgtttaattataagtaaacaaaatcttaaaccagaagaaaggtctgctttcgtgttacccata |
244 |
Q |
| |
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|||||||||| ||||||| |||||||| ||| |||||||||||| |||||||||||||||||||||||||||||||| | |||| |||||| ||| |
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| T |
34174528 |
aatatcttcattgcaagcacttttaagccacttttggcgtttaactataagtaaacaaaatcttaaaccagaagaaaataccattttcaggttaccaata |
34174429 |
T |
|
| Q |
245 |
gattgtaggacaagaatgtgtccaaagttagaagagaattattttggaagtggaatcggagcaactgggtatgtaataatgaaagtaggggaattaat-- |
342 |
Q |
| |
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||||||||||||||||||||||||||||||| ||||||||||||||| | | ||||||| ||| ||||||| ||||||||||||||||| || |
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| T |
34174428 |
gattgtaggacaagaatgtgtccaaagttagcagagaattattttggtaacgcgatcggagtgtatggagatgtaatcatgaaagtaggggaattgatta |
34174329 |
T |
|
| Q |
343 |
-ggaaagtgggattggtaaaattgcaatggaaatgaataaggagatttcatcaaaatctcatcatgaaaagttagtgagtaattatgagtcttggttgaa |
441 |
Q |
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|||| |||| |||||||| ||| ||||||||||| ||| |||||| ||||||||||||| ||| || ||| ||| || |||||||||||||| |
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| T |
34174328 |
aggaaggtggtattggtaaggctgctatggaaatgaacaagatgatttctaaggaatctcatcatgagaaggtaatgaataactacgagtcttggttgaa |
34174229 |
T |
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