View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19073_low_8 (Length: 491)

Name: NF19073_low_8
Description: NF19073
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19073_low_8
NF19073_low_8
[»] chr1 (12 HSPs)
chr1 (1-482)||(4570624-4571110)
chr1 (1-482)||(4014852-4015343)
chr1 (115-327)||(10218835-10219054)
chr1 (98-322)||(21855367-21855592)
chr1 (98-323)||(4016756-4016981)
chr1 (115-326)||(4366496-4366708)
chr1 (104-235)||(39379051-39379182)
chr1 (104-235)||(17560763-17560894)
chr1 (113-189)||(50645484-50645560)
chr1 (416-475)||(4017083-4017139)
chr1 (130-179)||(15961233-15961282)
chr1 (5-48)||(4016687-4016730)
[»] chr5 (5 HSPs)
chr5 (98-322)||(24330883-24331108)
chr5 (114-178)||(18964830-18964894)
chr5 (116-192)||(29597554-29597630)
chr5 (116-190)||(29647670-29647744)
chr5 (116-190)||(29642353-29642427)
[»] chr7 (48 HSPs)
chr7 (114-326)||(29921993-29922200)
chr7 (115-235)||(29867188-29867305)
chr7 (114-326)||(29859311-29859524)
chr7 (115-326)||(29106665-29106883)
chr7 (114-215)||(29874480-29874581)
chr7 (115-235)||(29881205-29881325)
chr7 (114-235)||(29454103-29454224)
chr7 (116-326)||(29899225-29899442)
chr7 (161-326)||(29885105-29885271)
chr7 (121-232)||(29445663-29445774)
chr7 (114-184)||(14076678-14076748)
chr7 (114-184)||(14386706-14386776)
chr7 (113-184)||(1985954-1986025)
chr7 (114-183)||(660847-660916)
chr7 (114-227)||(29431001-29431111)
chr7 (116-184)||(19344577-19344645)
chr7 (114-190)||(20352089-20352165)
chr7 (114-190)||(22100487-22100563)
chr7 (115-178)||(19604464-19604527)
chr7 (114-231)||(29476340-29476457)
chr7 (138-235)||(29920067-29920164)
chr7 (114-190)||(22063636-22063712)
chr7 (132-190)||(20338918-20338976)
chr7 (104-190)||(20374493-20374579)
chr7 (113-178)||(18514786-18514851)
chr7 (413-446)||(29880951-29880984)
chr7 (114-182)||(6864807-6864875)
chr7 (116-184)||(22028628-22028696)
chr7 (113-189)||(22070106-22070182)
chr7 (134-190)||(22080862-22080918)
chr7 (282-326)||(29881113-29881157)
chr7 (125-232)||(29895418-29895528)
chr7 (114-189)||(19637217-19637292)
chr7 (114-189)||(24010378-24010453)
chr7 (114-176)||(13416911-13416973)
chr7 (114-184)||(20058057-20058127)
chr7 (425-471)||(24021453-24021499)
chr7 (132-190)||(36263047-36263105)
chr7 (137-190)||(9807818-9807871)
chr7 (116-189)||(12819918-12819991)
chr7 (412-441)||(22021074-22021103)
chr7 (281-326)||(29867096-29867141)
chr7 (132-189)||(36255361-36255418)
chr7 (116-184)||(19722018-19722086)
chr7 (413-441)||(22036792-22036820)
chr7 (115-191)||(23993528-23993604)
chr7 (114-182)||(26003031-26003099)
chr7 (118-190)||(36260247-36260319)
[»] chr3 (4 HSPs)
chr3 (114-235)||(3625683-3625804)
chr3 (114-184)||(25901279-25901349)
chr3 (114-184)||(25915297-25915367)
chr3 (285-326)||(3625591-3625632)
[»] chr4 (12 HSPs)
chr4 (104-235)||(3557675-3557806)
chr4 (104-235)||(3560948-3561079)
chr4 (104-235)||(3565693-3565824)
chr4 (114-191)||(53774833-53774910)
chr4 (114-190)||(11970982-11971058)
chr4 (115-184)||(53430100-53430169)
chr4 (114-190)||(11981683-11981759)
chr4 (104-235)||(1686275-1686406)
chr4 (118-184)||(837776-837842)
chr4 (406-446)||(3561311-3561351)
chr4 (116-189)||(53790548-53790621)
chr4 (282-326)||(1686454-1686498)
[»] chr6 (9 HSPs)
chr6 (113-184)||(6921349-6921420)
chr6 (116-184)||(6954521-6954589)
chr6 (114-182)||(6947880-6947948)
chr6 (114-190)||(20770644-20770720)
chr6 (114-173)||(17369675-17369734)
chr6 (113-180)||(6935217-6935284)
chr6 (113-184)||(6942966-6943037)
chr6 (135-189)||(19746715-19746769)
chr6 (120-184)||(24950150-24950214)
[»] chr2 (8 HSPs)
chr2 (113-181)||(14514903-14514971)
chr2 (118-184)||(20975558-20975624)
chr2 (114-178)||(554482-554546)
chr2 (116-184)||(18908811-18908879)
chr2 (116-184)||(18913559-18913627)
chr2 (116-184)||(18920767-18920835)
chr2 (129-184)||(25698507-25698562)
chr2 (135-185)||(20967699-20967749)
[»] scaffold0867 (1 HSPs)
scaffold0867 (114-190)||(4669-4745)
[»] scaffold0649 (1 HSPs)
scaffold0649 (114-192)||(5430-5508)
[»] chr8 (2 HSPs)
chr8 (114-190)||(27618485-27618561)
chr8 (114-182)||(29390288-29390356)
[»] scaffold0354 (1 HSPs)
scaffold0354 (118-176)||(7471-7529)


Alignment Details
Target: chr1 (Bit Score: 450; Significance: 0; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 450; E-Value: 0
Query Start/End: Original strand, 1 - 482
Target Start/End: Complemental strand, 4571110 - 4570624
Alignment:
Q  1 agattgctctgaagtaccaatgaatcaccatcgtcagaaagaaataatagcatcagttgaaaataccttttgtcactgtcacgcaagtcatagtaagcta 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4571110 agattgctctgaagtaccaatgaatcaccatcgtcagaaagaaataatagcatcagttgaaaataccttttgtcactgtcacgcaagtcatagtaagcta 4571011  T
Q  101 ttagaagatcactataactaattttaagcaattgagtccaagaatcttcaaccccaaatttcttcatttgccatataacaaaatcagtttccctgtgtga 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4571010 ttagaagatcactataactaattttaagcaattgagtccaagaatcttcaaccccaaatttcttcatttgccatataacaaaatcagtttccctgtgtga 4570911  T
Q  201 ataagaaaaacaaaggcagcctcccaac----acaccaatagta-gcaagttcggcggcacttcatcaaccccacgaggcaccatgtattgattgtatgt 295  Q
    ||||||||||||||||||||||||||||    |||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4570910 ataagaaaaacaaaggcagcctcccaacacacacaccaatagtaggctagttcggcggcacttcatcaaccccacgaggcaccatgtattgattgtatgt 4570811  T
Q  296 ctccgtctccaaatcaagagaaacaataacagcttgttccacattagtactgctgtgaatagtaaccaaccagttcacagtgccactcaaatacacaggt 395  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4570810 ctccgtctccaaatcaagagaaacaataacagcttgttccacattagtactgctgtgaatagtaaccaaccagttcacagtgccactcaaatacacaggt 4570711  T
Q  396 ttgtggccaagaacagtaggaaaactttcaatatttctccaaacatcatcatcacccaaattgagaactctgacctctgatgatgtc 482  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||    
T  4570710 ttgtggccaagaacagtaggaaaactttcaatatttctccaaacatcatcaccacccaaattgagaactctgacctctgatgctgtc 4570624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 1 - 482
Target Start/End: Original strand, 4014852 - 4015343
Alignment:
Q  1 agattgctctgaagtaccaatgaatcaccatcgtcagaaagaaataatagcatcagttgaaaataccttttgtcactgtcacgcaagtcatagtaagcta 100  Q
    |||||||||||||||| || |||||||||||| || |||||||||||| ||| ||  |||||||| | | ||||| ||||||  ||||     ||| |||    
T  4014852 agattgctctgaagtatcagtgaatcaccatcctcggaaagaaataatggcaccaactgaaaataacatatgtcattgtcactaaagttgccataatcta 4014951  T
Q  101 ttagaagatcactataactaattttaagcaattgagtccaagaatcttcaaccccaaatttcttcatttgccatataacaaaatca------gtttccct 194  Q
    |||||||||||   ||||||| |||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||      ||||||||    
T  4014952 ttagaagatcatggtaactaactttaaggaattgagtccaagaatcttcaaccccaaatttcttcatctgccatataacaatatcaaaatgagtttccct 4015051  T
Q  195 gtgtgaataagaaaaacaaaggcagcctcccaacacaccaatagtag-caagttcggcggcacttcatcaaccccacgaggcaccatgtattgattgtat 293  Q
    |||  ||||||||||||||||||||||||||| |||||||||||| | | |||  ||| ||||||||||||| |||||||| ||  ||||||| |||||     
T  4015052 gtgcaaataagaaaaacaaaggcagcctcccagcacaccaatagttggcgagtcaggcagcacttcatcaacgccacgaggaactgtgtattgcttgtac 4015151  T
Q  294 gtctccgtctccaaatcaagagaaacaataacagcttgttccacattagtactgctgtgaata------gtaaccaaccagttcacagtgccactcaaat 387  Q
    | ||| |||||||||||||| |||||||||||||  ||||||||| ||  |||| ||||||||      ||| |||||||||| | ||| |||||||||     
T  4015152 gcctctgtctccaaatcaagtgaaacaataacagagtgttccacagtatcactggtgtgaatagtaggcgtagccaaccagtttatagtaccactcaaac 4015251  T
Q  388 acacaggtttgtggccaagaacagtaggaaaactttcaatatttctccaaacatcatcatcacccaaattgagaactctgacctctgatgatgtc 482  Q
    ||||| ||| |||| ||||||||  ||||||||||||||| ||||||||||   ||||| ||||||| ||||||||| | || ||||||| ||||    
T  4015252 acacatgttcgtggtcaagaacaacaggaaaactttcaatgtttctccaaa---catcaacacccaagttgagaactttcacatctgatgttgtc 4015343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 115 - 327
Target Start/End: Complemental strand, 10219054 - 10218835
Alignment:
Q  115 taactaattttaagcaattgagtccaagaatcttcaaccccaaatttcttcatttgccatataacaaaatcagtttccctgtgtgaataagaaaaacaaa 214  Q
    |||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| ||||  || ||||||||||||    
T  10219054 taactaattttaagtaattgagtccaagaatcttcaatcccaaatttcttcatttgccatacaacaaaatcagtttccttgtgcaaaaaagaaaaacaaa 10218955  T
Q  215 ggcagcctcccaacacaccaatagtag----caagttcg---gcggcacttcatcaaccccacgaggcaccatgtattgattgtatgtctccgtctccaa 307  Q
    |||| || ||||||||||||||||| |       || ||   ||| ||||| |||||  ||||  |||||||||||||||||||||||||||||||||||    
T  10218954 ggcaaccccccaacacaccaatagttggtgtgttgtacgaatgcgtcacttgatcaaaaccacagggcaccatgtattgattgtatgtctccgtctccaa 10218855  T
Q  308 atcaagagaaacaataacag 327  Q
    ||||||||||||||||||||    
T  10218854 atcaagagaaacaataacag 10218835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 98 - 322
Target Start/End: Original strand, 21855367 - 21855592
Alignment:
Q  98 ctattagaagatcactataactaattttaagcaattgagtccaagaatcttcaaccccaaatttcttcatttgccatataacaaaatcagtttccctgtg 197  Q
    |||||||||||| |   ||||||| |||||| | ||||||||||||||||||||||||||||| |||||| | ||||||||||||||| |||||| |||     
T  21855367 ctattagaagattatggtaactaactttaaggagttgagtccaagaatcttcaaccccaaattccttcatctcccatataacaaaatcggtttccttgta 21855466  T
Q  198 tgaataagaaaaacaaaggcagcctcccaacacaccaatag-tagcaagttcggcggcacttcatcaaccccacgaggcaccatgtattgattgtatgtc 296  Q
     ||||| ||||||||||| ||||| | ||| |||||||||| | ||   |||||||| ||||||||||  ||| ||||||  ||||||||||||||||||    
T  21855467 cgaatatgaaaaacaaagacagcccctcaatacaccaatagttggctctttcggcggaacttcatcaaaaccatgaggcataatgtattgattgtatgtc 21855566  T
Q  297 tccgtctccaaatcaagagaaacaat 322  Q
    ||||||||||||||||||||||||||    
T  21855567 tccgtctccaaatcaagagaaacaat 21855592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 98 - 323
Target Start/End: Original strand, 4016756 - 4016981
Alignment:
Q  98 ctattagaagatcactataactaattttaagcaattgagtccaagaatcttcaaccccaaatttcttcatttgccatataacaaaatcagtttccctgtg 197  Q
    ||||||||||||||   ||||||| ||||| ||| |||||||| ||||||||||| |||||||||||||| ||||| |||   ||||  |||| ||| |     
T  4016756 ctattagaagatcatggtaactaaatttaaacaactgagtccaggaatcttcaactccaaatttcttcatctgccagatacagaaattggtttgcctata 4016855  T
Q  198 tgaataagaaaaacaaaggcagcctcccaacacaccaatag-tagcaagttcggcggcacttcatcaaccccacgaggcaccatgtattgattgtatgtc 296  Q
     ||||||||||||||||||||||| |||||||||| ||||| | ||| ||   ||||| ||| |||||  ||||||||||||||||||||||||||||||    
T  4016856 ggaataagaaaaacaaaggcagccccccaacacactaatagttggcatgtaaagcggccctttatcaaaaccacgaggcaccatgtattgattgtatgtc 4016955  T
Q  297 tccgtctccaaatcaagagaaacaata 323  Q
    |||||| ||||||||||||||||||||    
T  4016956 tccgtc-ccaaatcaagagaaacaata 4016981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 115 - 326
Target Start/End: Original strand, 4366496 - 4366708
Alignment:
Q  115 taactaattttaagcaattgagtccaagaatcttcaaccccaaatttcttcatttgccatataacaaaatcagtttccctgtgtgaataagaaaaacaaa 214  Q
    ||||||| |||||| ||| |||||||||| ||||||||||| ||||||||||| ||||||| |||||||||||||| | |||  ||||||||||||||||    
T  4366496 taactaactttaagaaatggagtccaagactcttcaaccccgaatttcttcatctgccataaaacaaaatcagttttcttgtaagaataagaaaaacaaa 4366595  T
Q  215 ggcagcctcccaacacaccaatagtagcaagttc----ggcggcacttcatcaaccccacgaggcaccatgtattgattgtatgtctccgtctccaaatc 310  Q
    ||||| | |||||||||||||  || |   ||||    || |||||||| ||||  |||||||||| || |||||||||||||||||| ||  ||| |||    
T  4366596 ggcagtcccccaacacaccaactgttg---gttcagtaggtggcacttcttcaaaaccacgaggcagcaagtattgattgtatgtctctgtacccagatc 4366692  T
Q  311 aagagaaacaataaca 326  Q
    ||| ||||||||||||    
T  4366693 aagcgaaacaataaca 4366708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 104 - 235
Target Start/End: Original strand, 39379051 - 39379182
Alignment:
Q  104 gaagatcactataactaattttaagcaattgagtccaagaatcttcaaccccaaatttcttcatttgccatataacaaaatcagtttccctgtgtgaata 203  Q
    ||||||||  |||||| |||||||| |||||||||||||| |||||||||||||||| |||||| |||||||||| |||||||||||  ||||   ||||    
T  39379051 gaagatcatgataactgattttaagaaattgagtccaagactcttcaaccccaaattccttcatctgccatataataaaatcagtttttctgtaacaata 39379150  T
Q  204 agaaaaacaaaggcagcctcccaacacaccaa 235  Q
    |||||||||||| ||| | |||||||||||||    
T  39379151 agaaaaacaaagacagtcacccaacacaccaa 39379182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 104 - 235
Target Start/End: Original strand, 17560763 - 17560894
Alignment:
Q  104 gaagatcactataactaattttaagcaattgagtccaagaatcttcaaccccaaatttcttcatttgccatataacaaaatcagtttccctgtgtgaata 203  Q
    |||||||  ||||||||||| |||| ||| | |||||||||||||||||||||||||||||||| ||||||||||| |||||  ||||| |||   ||||    
T  17560763 gaagatcgttataactaattataaggaatggtgtccaagaatcttcaaccccaaatttcttcatgtgccatataaccaaatcgatttccttgtaacaata 17560862  T
Q  204 agaaaaacaaaggcagcctcccaacacaccaa 235  Q
    |||||||||||| ||| | |||||||||||||    
T  17560863 agaaaaacaaagacagtcccccaacacaccaa 17560894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 113 - 189
Target Start/End: Original strand, 50645484 - 50645560
Alignment:
Q  113 tataactaattttaagcaattgagtccaagaatcttcaaccccaaatttcttcatttgccatataacaaaatcagtt 189  Q
    |||||||||||||||  |||||| ||||||| |||| ||| ||||| | |||||||||||| |||||||||| ||||    
T  50645484 tataactaattttaaataattgaatccaagactcttgaactccaaaatccttcatttgccacataacaaaatgagtt 50645560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 416 - 475
Target Start/End: Original strand, 4017083 - 4017139
Alignment:
Q  416 aaaactttcaatatttctccaaacatcatcatcacccaaattgagaactctgacctctga 475  Q
    |||||| ||||||||||||||||   ||||||||||||||||||||||| | ||||||||    
T  4017083 aaaactgtcaatatttctccaaa---catcatcacccaaattgagaactttcacctctga 4017139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 130 - 179
Target Start/End: Complemental strand, 15961282 - 15961233
Alignment:
Q  130 aattgagtccaagaatcttcaaccccaaatttcttcatttgccatataac 179  Q
    |||||||||||||| |||||| | |||||||||||||||| |||||||||    
T  15961282 aattgagtccaagattcttcagctccaaatttcttcattttccatataac 15961233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 5 - 48
Target Start/End: Original strand, 4016687 - 4016730
Alignment:
Q  5 tgctctgaagtaccaatgaatcaccatcgtcagaaagaaataat 48  Q
    |||||||||||| || |||||||||||| |||||||||||||||    
T  4016687 tgctctgaagtatcagtgaatcaccatcctcagaaagaaataat 4016730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 102; Significance: 2e-50; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 98 - 322
Target Start/End: Original strand, 24330883 - 24331108
Alignment:
Q  98 ctattagaagatcactataactaattttaagcaattgagtccaagaatcttcaaccccaaatttcttcatttgccatataacaaaatcagtttccctgtg 197  Q
    |||||||||||| |   ||||||| |||||| | ||||||||||||||||||||||||||||| |||||| | ||||||||||||||| |||||| |||     
T  24330883 ctattagaagattatggtaactaactttaaggagttgagtccaagaatcttcaaccccaaattccttcatctcccatataacaaaatcggtttccttgta 24330982  T
Q  198 tgaataagaaaaacaaaggcagcctcccaacacaccaatag-tagcaagttcggcggcacttcatcaaccccacgaggcaccatgtattgattgtatgtc 296  Q
     ||||| ||||||||||| ||||| | ||| |||||||||| | ||   |||||||| ||||||||||  ||| ||||||  ||||||||||||||||||    
T  24330983 cgaatatgaaaaacaaagacagcccctcaatacaccaatagttggctctttcggcggaacttcatcaaaaccatgaggcataatgtattgattgtatgtc 24331082  T
Q  297 tccgtctccaaatcaagagaaacaat 322  Q
    ||||||||||||||||||||||||||    
T  24331083 tccgtctccaaatcaagagaaacaat 24331108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 114 - 178
Target Start/End: Original strand, 18964830 - 18964894
Alignment:
Q  114 ataactaattttaagcaattgagtccaagaatcttcaaccccaaatttcttcatttgccatataa 178  Q
    ||||| ||||||||| |||||||||||||| |||||||| ||||||| |||||||||||||||||    
T  18964830 ataacaaattttaagaaattgagtccaagagtcttcaactccaaattccttcatttgccatataa 18964894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 116 - 192
Target Start/End: Original strand, 29597554 - 29597630
Alignment:
Q  116 aactaattttaagcaattgagtccaagaatcttcaaccccaaatttcttcatttgccatataacaaaatcagtttcc 192  Q
    ||||||||||||| |||||||||||||| | |||||| |||||||   ||||||||||||||||||||| |||||||    
T  29597554 aactaattttaaggaattgagtccaagattgttcaactccaaattcaatcatttgccatataacaaaatgagtttcc 29597630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 116 - 190
Target Start/End: Complemental strand, 29647744 - 29647670
Alignment:
Q  116 aactaattttaagcaattgagtccaagaatcttcaaccccaaatttcttcatttgccatataacaaaatcagttt 190  Q
    ||||||||||||| |||||||||||||| | |||||  |||||||   ||||||||||||||||||||| |||||    
T  29647744 aactaattttaaggaattgagtccaagattgttcaaatccaaattctatcatttgccatataacaaaatgagttt 29647670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 116 - 190
Target Start/End: Complemental strand, 29642427 - 29642353
Alignment:
Q  116 aactaattttaagcaattgagtccaagaatcttcaaccccaaatttcttcatttgccatataacaaaatcagttt 190  Q
    ||||||||||||| |||||||||||||| | |||||  |||||||   |||||||||||||||| |||| |||||    
T  29642427 aactaattttaaggaattgagtccaagattgttcaaatccaaattctatcatttgccatataacgaaatgagttt 29642353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 79; Significance: 1e-36; HSPs: 48)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 114 - 326
Target Start/End: Original strand, 29921993 - 29922200
Alignment:
Q  114 ataactaattttaagcaattgagtccaagaatcttcaaccccaaatttcttcatttgccatataacaaaatcagtttccctgtgtgaataagaaaaacaa 213  Q
    |||||||||| |||| ||||||| ||||||||||||| |||||||||||||||| |||||||||||||||||||||||  |||  | |||||||||||||    
T  29921993 ataactaattctaaggaattgagaccaagaatcttcatccccaaatttcttcatctgccatataacaaaatcagtttctttgtaagcataagaaaaacaa 29922092  T
Q  214 aggcagcctcccaacacaccaatagtagcaagttcggc----ggcacttcatcaaccccacgaggcaccatgtattgattgtatgtctccgtctccaaat 309  Q
    |||||||| |||||||||||||  || |   |||| ||    |||||||||||||      |||||| ||  ||||||||||||||||||||| | ||||    
T  29922093 aggcagccccccaacacaccaacggttg---gttctgcagatggcacttcatcaa------gaggcaacagatattgattgtatgtctccgtccctaaat 29922183  T
Q  310 caagagaaacaataaca 326  Q
    |||||||||| ||||||    
T  29922184 caagagaaacgataaca 29922200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 115 - 235
Target Start/End: Complemental strand, 29867305 - 29867188
Alignment:
Q  115 taactaattttaagcaattgagtccaagaatcttcaaccccaaatttcttcatttgccatataacaaaatcagtttccctgtgtgaataagaaaaacaaa 214  Q
    ||||||||| |||| |||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||   |  ||||||||||||||||    
T  29867305 taactaattctaaggaattgagtccaagaatcttcaaccccgaatttcttcatttgccatataataaaatcagtttcc---ttagaataagaaaaacaaa 29867209  T
Q  215 ggcagcctcccaacacaccaa 235  Q
    ||||| | |||||||||||||    
T  29867208 ggcagtcccccaacacaccaa 29867188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 114 - 326
Target Start/End: Complemental strand, 29859524 - 29859311
Alignment:
Q  114 ataactaattttaagcaattgagtccaagaatcttcaaccccaaatttcttcatttgccatataacaaaatcagtttccctgtgtgaataagaaaaacaa 213  Q
    ||||||||||||||| ||| | ||||||||||||||||| |||||||||||||| | ||||||||| |||||| ||||| |||   ||||||||||||||    
T  29859524 ataactaattttaagaaatggggtccaagaatcttcaactccaaatttcttcatctcccatataacgaaatcaatttccttgtaacaataagaaaaacaa 29859425  T
Q  214 aggcagcctcccaacacaccaatagtagcaagttc-ggcggcacttcatcaaccccacgaggcaccatgtattgattgtatgtctccgtctccaaatcaa 312  Q
    ||   | | ||||||||||||||||| |  |   | |||||||| ||||||| |||||||||||  | ||||||||||||||| ||  || |||||||||    
T  29859424 agatggtcccccaacacaccaatagttggtatcacaggcggcacctcatcaaacccacgaggcaataagtattgattgtatgtttcactccccaaatcaa 29859325  T
Q  313 gagaaacaataaca 326  Q
    | ||||||||||||    
T  29859324 gtgaaacaataaca 29859311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 115 - 326
Target Start/End: Complemental strand, 29106883 - 29106665
Alignment:
Q  115 taactaattttaagcaattgagtccaagaatcttcaaccccaaatttcttcatttgccatataacaaaatca------gtttccctgtgtgaataagaaa 208  Q
    |||||||||||||  | |||||||||||| ||||||||||||||||||||||| ||||||| ||||||||||      ||||    || | |||||||||    
T  29106883 taactaattttaaaaagttgagtccaagactcttcaaccccaaatttcttcatctgccatacaacaaaatcaaaatctgtttttacgtataaataagaaa 29106784  T
Q  209 aacaaaggcagcctcccaacacaccaa-tagtagcaagttcggcggcacttcatcaaccccacgaggcaccatgtattgattgtatgtctccgtctccaa 307  Q
    ||||||||||||| ||||||||||||| |  | ||   || | |||||||||||||| ||||||||||| | |||||||||||||||||||| ||  | |    
T  29106783 aacaaaggcagccccccaacacaccaactgttggccgttttgacggcacttcatcaaacccacgaggcaacttgtattgattgtatgtctccatcctcca 29106684  T
Q  308 atcaagagaaacaataaca 326  Q
    |||||| ||||||||||||    
T  29106683 atcaagtgaaacaataaca 29106665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 114 - 215
Target Start/End: Complemental strand, 29874581 - 29874480
Alignment:
Q  114 ataactaattttaagcaattgagtccaagaatcttcaaccccaaatttcttcatttgccatataacaaaatcagtttccctgtgtgaataagaaaaacaa 213  Q
    ||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||  |||||||||||| |||   ||||||||||||||    
T  29874581 ataactaattttaagtaatggagtccaagaatcttcaaccccaaatttcttcatttgccatataatgaaatcagtttccttgtaacaataagaaaaacaa 29874482  T
Q  214 ag 215  Q
    ||    
T  29874481 ag 29874480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 115 - 235
Target Start/End: Complemental strand, 29881325 - 29881205
Alignment:
Q  115 taactaattttaagcaattgagtccaagaatcttcaaccccaaatttcttcatttgccatataacaaaatcagtttccctgtgtgaataagaaaaacaaa 214  Q
    ||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| | || ||||||||||||| |||   ||||| |||| ||||    
T  29881325 taactaattctaaggaattgagtccaagaatcttcaaccccaaatttcttcatttgccaaacaataaaatcagtttccttgtaacaataacaaaagcaaa 29881226  T
Q  215 ggcagcctcccaacacaccaa 235  Q
    ||||| |  ||||||||||||    
T  29881225 ggcagtcctccaacacaccaa 29881205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 114 - 235
Target Start/End: Original strand, 29454103 - 29454224
Alignment:
Q  114 ataactaattttaagcaattgagtccaagaatcttcaaccccaaatttcttcatttgccatataacaaaatcagtttccctgtgtgaataagaaaaacaa 213  Q
    ||||||||||||||  ||||||||||||||||||||||| ||||||||| ||||  |||||||||||||||| | |||| |||  |||||||||||||||    
T  29454103 ataactaattttaaagaattgagtccaagaatcttcaactccaaatttcatcatccgccatataacaaaatcgggttccttgtaagaataagaaaaacaa 29454202  T
Q  214 aggcagcctcccaacacaccaa 235  Q
    ||||  || ||||| |||||||    
T  29454203 aggcttccccccaaaacaccaa 29454224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 116 - 326
Target Start/End: Complemental strand, 29899442 - 29899225
Alignment:
Q  116 aactaattttaagcaattgagtccaagaatcttcaaccccaaatttcttcatttgccatataacaaaatca------gtttccctgtgtgaataagaaaa 209  Q
    |||||||||| |  ||||||||||| || ||||||||||||||||||||||| ||||||||||||||||||      || |   |||   || |||||||    
T  29899442 aactaatttttaaaaattgagtccaggactcttcaaccccaaatttcttcatctgccatataacaaaatcaaaattggtattattgtaaaaacaagaaaa 29899343  T
Q  210 acaaaggcagcctcccaacacaccaatagtagcaagttcgg-cggcacttcatcaaccccacgaggcaccatgtattgattgtatgtctccgtctccaaa 308  Q
    |||||||||||| |||||||||||||  || |      | | |||||||||||||| |||| |||||| |||||| || || ||||||||||||||||||    
T  29899342 acaaaggcagccccccaacacaccaaatgttggctccacagacggcacttcatcaaacccaggaggcaacatgtactgcttctatgtctccgtctccaaa 29899243  T
Q  309 tcaagagaaacaataaca 326  Q
    ||||| ||||||||||||    
T  29899242 tcaagtgaaacaataaca 29899225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 161 - 326
Target Start/End: Complemental strand, 29885271 - 29885105
Alignment:
Q  161 tcttcatttgccatataacaaaatcagtttccctgtgtgaataagaaaaacaaaggcagcctcccaacacaccaatagtagcaagttcgg-cggcacttc 259  Q
    ||||||| |||||||||||||||||||||||| ||    |||||||||||||||||||||| || | ||||||||  || |      | | |||||||||    
T  29885271 tcttcatctgccatataacaaaatcagtttccttggaaaaataagaaaaacaaaggcagccccctagcacaccaaatgttggctccacagacggcacttc 29885172  T
Q  260 atcaaccccacgaggcaccatgtattgattgtatgtctccgtctccaaatcaagagaaacaataaca 326  Q
    ||||| |||| |||||| |||||| || || ||||||||||||||||||||||| ||||||||||||    
T  29885171 atcaaacccaggaggcaacatgtactgcttctatgtctccgtctccaaatcaagtgaaacaataaca 29885105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 121 - 232
Target Start/End: Original strand, 29445663 - 29445774
Alignment:
Q  121 attttaagcaattgagtccaagaatcttcaaccccaaatttcttcatttgccatataacaaaatcagtttccctgtgtgaataagaaaaacaaaggcagc 220  Q
    ||||| || |||||||||||||| ||||||||||| |||| |||||| |||||||||| |||||| |||||| |||   |||||||| |||||||| |||    
T  29445663 atttttagaaattgagtccaagagtcttcaacccctaattccttcatctgccatataagaaaatcggtttccttgtaaaaataagaacaacaaaggaagc 29445762  T
Q  221 ctcccaacacac 232  Q
    | ||||||||||    
T  29445763 cccccaacacac 29445774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 114 - 184
Target Start/End: Complemental strand, 14076748 - 14076678
Alignment:
Q  114 ataactaattttaagcaattgagtccaagaatcttcaaccccaaatttcttcatttgccatataacaaaat 184  Q
    ||||||||||||||| |||||||||||||| |||||||| ||||||| |||||||||||||||||| ||||    
T  14076748 ataactaattttaagaaattgagtccaagagtcttcaactccaaattccttcatttgccatataacgaaat 14076678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 114 - 184
Target Start/End: Complemental strand, 14386776 - 14386706
Alignment:
Q  114 ataactaattttaagcaattgagtccaagaatcttcaaccccaaatttcttcatttgccatataacaaaat 184  Q
    ||||||||||||||| |||||||||||||| |||||||| ||||||| |||||||||||||||||| ||||    
T  14386776 ataactaattttaagaaattgagtccaagagtcttcaactccaaattccttcatttgccatataacgaaat 14386706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 113 - 184
Target Start/End: Original strand, 1985954 - 1986025
Alignment:
Q  113 tataactaattttaagcaattgagtccaagaatcttcaaccccaaatttcttcatttgccatataacaaaat 184  Q
    ||||||||||||||| ||||||||||||||| |||||||| ||||||| |||||||||||| | ||||||||    
T  1985954 tataactaattttaaacaattgagtccaagattcttcaacgccaaattccttcatttgccaaagaacaaaat 1986025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 114 - 183
Target Start/End: Original strand, 660847 - 660916
Alignment:
Q  114 ataactaattttaagcaattgagtccaagaatcttcaaccccaaatttcttcatttgccatataacaaaa 183  Q
    ||||||||||||||| |||||||||||||| |||||||| | ||||| |||||| |||||||||||||||    
T  660847 ataactaattttaaggaattgagtccaagactcttcaactcgaaattccttcatctgccatataacaaaa 660916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 114 - 227
Target Start/End: Original strand, 29431001 - 29431111
Alignment:
Q  114 ataactaattttaagcaattgagtccaagaatcttcaaccccaaatttcttcatttgccatataacaaaatcagtttccctgtgtgaataagaaaaacaa 213  Q
    ||||||||||||||| ||||| ||||||||||||| | ||||||||||| ||||  |||||||||||||||  || |||   |  |||||||||||||||    
T  29431001 ataactaattttaaggaattgggtccaagaatctttagccccaaatttcatcatccgccatataacaaaataggtgtcc---ttagaataagaaaaacaa 29431097  T
Q  214 aggcagcctcccaa 227  Q
    ||||| || |||||    
T  29431098 aggcatccccccaa 29431111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 116 - 184
Target Start/End: Original strand, 19344577 - 19344645
Alignment:
Q  116 aactaattttaagcaattgagtccaagaatcttcaaccccaaatttcttcatttgccatataacaaaat 184  Q
    ||||||||||||| |||||||||||||| | |||||| ||||||| | |||| ||||||||||||||||    
T  19344577 aactaattttaagaaattgagtccaagattgttcaactccaaattccatcatctgccatataacaaaat 19344645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 114 - 190
Target Start/End: Complemental strand, 20352165 - 20352089
Alignment:
Q  114 ataactaattttaagcaattgagtccaagaatcttcaaccccaaatttcttcatttgccatataacaaaatcagttt 190  Q
    ||||||||||||||  | ||||||||| ||||||||||| ||||||| |||||||| |||||| ||||||| |||||    
T  20352165 ataactaattttaaaaagttgagtccatgaatcttcaactccaaattccttcatttcccatattacaaaatgagttt 20352089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 114 - 190
Target Start/End: Complemental strand, 22100563 - 22100487
Alignment:
Q  114 ataactaattttaagcaattgagtccaagaatcttcaaccccaaatttcttcatttgccatataacaaaatcagttt 190  Q
    |||||||||||| |  || ||||||||||| |||| ||| ||||||||||||||||||||||||| ||||| |||||    
T  22100563 ataactaattttgaataactgagtccaagactcttgaactccaaatttcttcatttgccatataataaaatgagttt 22100487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 115 - 178
Target Start/End: Original strand, 19604464 - 19604527
Alignment:
Q  115 taactaattttaagcaattgagtccaagaatcttcaaccccaaatttcttcatttgccatataa 178  Q
    |||||||||||||| ||||||||||| || |||||||| ||||||| |||||| ||||||||||    
T  19604464 taactaattttaaggaattgagtccaggagtcttcaactccaaattccttcatctgccatataa 19604527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 114 - 231
Target Start/End: Original strand, 29476340 - 29476457
Alignment:
Q  114 ataactaattttaagcaattgagtccaagaatcttcaaccccaaatttcttcatttgccatataacaaaatcagtttccctgtgtgaataagaaaaacaa 213  Q
    |||||| |||||||| |||||||||||||| |  |||  ||| |||| |||||| |||||||||| |||||| |||||| |||   |||| ||| |||||    
T  29476340 ataacttattttaagaaattgagtccaagagttgtcattccctaattccttcatctgccatataagaaaatcggtttccttgtaaaaataggaacaacaa 29476439  T
Q  214 aggcagcctcccaacaca 231  Q
    ||| |||| |||||||||    
T  29476440 aggaagccccccaacaca 29476457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 138 - 235
Target Start/End: Original strand, 29920067 - 29920164
Alignment:
Q  138 ccaagaatcttcaaccccaaatttcttcatttgccatataacaaaatcagtttccctgtgtgaataagaaaaacaaaggcagcctcccaacacaccaa 235  Q
    |||||||| |||||  || ||||||||||| | |||||| | ||| || |||||| |||  ||||||||| || ||||||||||||||||||||||||    
T  29920067 ccaagaatattcaagtccgaatttcttcatcttccatattataaattcggtttccttgtaagaataagaagaaaaaaggcagcctcccaacacaccaa 29920164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 114 - 190
Target Start/End: Complemental strand, 22063712 - 22063636
Alignment:
Q  114 ataactaattttaagcaattgagtccaagaatcttcaaccccaaatttcttcatttgccatataacaaaatcagttt 190  Q
    |||||||||||| |  || ||||||||||| |||| ||  ||||||| ||||||||||||||||||||||| |||||    
T  22063712 ataactaattttgaataactgagtccaagactcttgaaatccaaattccttcatttgccatataacaaaatgagttt 22063636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 132 - 190
Target Start/End: Complemental strand, 20338976 - 20338918
Alignment:
Q  132 ttgagtccaagaatcttcaaccccaaatttcttcatttgccatataacaaaatcagttt 190  Q
    ||||||||||||||||||||| || |||| |||||||| |||||| ||||||| |||||    
T  20338976 ttgagtccaagaatcttcaactcctaattccttcattttccatattacaaaatgagttt 20338918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 104 - 190
Target Start/End: Original strand, 20374493 - 20374579
Alignment:
Q  104 gaagatcactataactaattttaagcaattgagtccaagaatcttcaaccccaaatttcttcatttgccatataacaaaatcagttt 190  Q
    |||||| | |||||||||||||||  | |||| |||| |||||| |||| ||||||| |||||||| |||||| ||||||| |||||    
T  20374493 gaagattattataactaattttaaaaagttgaatccatgaatctccaactccaaattccttcatttcccatattacaaaatgagttt 20374579  T

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Target: chr7; HSP #25
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 113 - 178
Target Start/End: Original strand, 18514786 - 18514851
Alignment:
Q  113 tataactaattttaagcaattgagtccaagaatcttcaaccccaaatttcttcatttgccatataa 178  Q
    |||||||||||||||| |||||||||||||| | |||||| |||||||  | ||||| ||||||||    
T  18514786 tataactaattttaaggaattgagtccaagagttttcaactccaaattcgtccattttccatataa 18514851  T

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Target: chr7; HSP #26
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 413 - 446
Target Start/End: Complemental strand, 29880984 - 29880951
Alignment:
Q  413 aggaaaactttcaatatttctccaaacatcatca 446  Q
    ||||||||||||||||||||||||||||||||||    
T  29880984 aggaaaactttcaatatttctccaaacatcatca 29880951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 114 - 182
Target Start/End: Original strand, 6864807 - 6864875
Alignment:
Q  114 ataactaattttaagcaattgagtccaagaatcttcaaccccaaatttcttcatttgccatataacaaa 182  Q
    ||||||| ||||||| || ||||||||||| |||||||| ||||||| |||||||  |||||| |||||    
T  6864807 ataactagttttaaggaactgagtccaagactcttcaactccaaattccttcattaaccatattacaaa 6864875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 116 - 184
Target Start/End: Complemental strand, 22028696 - 22028628
Alignment:
Q  116 aactaattttaagcaattgagtccaagaatcttcaaccccaaatttcttcatttgccatataacaaaat 184  Q
    ||||||| ||||| |||||||||||||| |||||||| ||| | | | |||||| ||||||||||||||    
T  22028696 aactaatcttaagtaattgagtccaagactcttcaactccataatccgtcattttccatataacaaaat 22028628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 113 - 189
Target Start/End: Complemental strand, 22070182 - 22070106
Alignment:
Q  113 tataactaattttaagcaattgagtccaagaatcttcaaccccaaatttcttcatttgccatataacaaaatcagtt 189  Q
    ||||||||||||| |  ||  |||||||||| |||| ||| ||||||| ||||||||||||||||| ||||| ||||    
T  22070182 tataactaattttgaataaccgagtccaagactcttgaactccaaattgcttcatttgccatataataaaatgagtt 22070106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 134 - 190
Target Start/End: Complemental strand, 22080918 - 22080862
Alignment:
Q  134 gagtccaagaatcttcaaccccaaatttcttcatttgccatataacaaaatcagttt 190  Q
    |||||||||| |||| ||| ||||||| ||||||||||||||||| ||||| |||||    
T  22080918 gagtccaagactcttgaactccaaattgcttcatttgccatataataaaatgagttt 22080862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 282 - 326
Target Start/End: Complemental strand, 29881157 - 29881113
Alignment:
Q  282 tattgattgtatgtctccgtctccaaatcaagagaaacaataaca 326  Q
    ||||||||||||||||| ||| |||||||||| ||||||||||||    
T  29881157 tattgattgtatgtctcagtccccaaatcaagtgaaacaataaca 29881113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 125 - 232
Target Start/End: Complemental strand, 29895528 - 29895418
Alignment:
Q  125 taagcaattgagtccaagaatcttcaaccccaaatttcttcatttgccatataacaaaatcagtttccctgt---gtgaataagaaaaacaaaggcagcc 221  Q
    |||| |||||| ||||||| ||||| | ||||||||||||||| ||||||| |||||| ||  ||||| |||     ||||||||||||||||| |||||    
T  29895528 taagtaattgactccaagactcttctatcccaaatttcttcatctgccataaaacaaattcgttttccttgtcagaagaataagaaaaacaaagacagcc 29895429  T
Q  222 tcccaacacac 232  Q
     ||||| ||||    
T  29895428 acccaagacac 29895418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 114 - 189
Target Start/End: Original strand, 19637217 - 19637292
Alignment:
Q  114 ataactaattttaagcaattgagtccaagaatcttcaaccccaaatttcttcatttgccatataacaaaatcagtt 189  Q
    ||||||||||||||| |   || |||| || |||| ||| ||||||| ||||||||||||||||| ||||||||||    
T  19637217 ataactaattttaaggagccgaatccacgactcttgaactccaaattccttcatttgccatataataaaatcagtt 19637292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 114 - 189
Target Start/End: Complemental strand, 24010453 - 24010378
Alignment:
Q  114 ataactaattttaagcaattgagtccaagaatcttcaaccccaaatttcttcatttgccatataacaaaatcagtt 189  Q
    ||||||||| ||||| |||||||||||||| |||| ||||||  | | |||||| ||||||| |||||| ||||||    
T  24010453 ataactaatcttaagtaattgagtccaagactcttgaaccccgtactccttcatatgccataaaacaaattcagtt 24010378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 114 - 176
Target Start/End: Original strand, 13416911 - 13416973
Alignment:
Q  114 ataactaattttaagcaattgagtccaagaatcttcaaccccaaatttcttcatttgccatat 176  Q
    ||||||||||||||  |||| |  |||||| |||||||| ||||||| |||||||||||||||    
T  13416911 ataactaattttaacgaattcaacccaagactcttcaactccaaattccttcatttgccatat 13416973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 114 - 184
Target Start/End: Original strand, 20058057 - 20058127
Alignment:
Q  114 ataactaattttaagcaattgagtccaagaatcttcaaccccaaatttcttcatttgccatataacaaaat 184  Q
    ||||||||||||||| ||||||  |||||| |||||||| |  |||| || ||||| ||||||||||||||    
T  20058057 ataactaattttaagaaattgacaccaagactcttcaactctgaattcctccattttccatataacaaaat 20058127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 425 - 471
Target Start/End: Complemental strand, 24021499 - 24021453
Alignment:
Q  425 aatatttctccaaacatcatcatcacccaaattgagaactctgacct 471  Q
    |||||||||||||  |||||||||| ||||| |||||||||||||||    
T  24021499 aatatttctccaacaatcatcatcatccaaactgagaactctgacct 24021453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 132 - 190
Target Start/End: Complemental strand, 36263105 - 36263047
Alignment:
Q  132 ttgagtccaagaatcttcaaccccaaatttcttcatttgccatataacaaaatcagttt 190  Q
    |||||||||||| |||||||| |||||||  | ||| | ||||||||||||||||||||    
T  36263105 ttgagtccaagactcttcaactccaaattcttccatcttccatataacaaaatcagttt 36263047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 137 - 190
Target Start/End: Complemental strand, 9807871 - 9807818
Alignment:
Q  137 tccaagaatcttcaaccccaaatttcttcatttgccatataacaaaatcagttt 190  Q
    ||||||| |||||||| ||||||| |||||| ||||||||||| ||||| ||||    
T  9807871 tccaagactcttcaactccaaattccttcatctgccatataacgaaatcggttt 9807818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #40
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 116 - 189
Target Start/End: Original strand, 12819918 - 12819991
Alignment:
Q  116 aactaattttaagcaattgagtccaagaatcttcaaccccaaatttcttcatttgccatataacaaaatcagtt 189  Q
    |||| |||||||| ||||||||||| || | |||||| ||||||| | |||| ||||||| |||||||| ||||    
T  12819918 aactgattttaaggaattgagtccaggattgttcaactccaaattccgtcatctgccatacaacaaaataagtt 12819991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #41
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 412 - 441
Target Start/End: Complemental strand, 22021103 - 22021074
Alignment:
Q  412 taggaaaactttcaatatttctccaaacat 441  Q
    ||||||||||||||||||||||||||||||    
T  22021103 taggaaaactttcaatatttctccaaacat 22021074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #42
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 281 - 326
Target Start/End: Complemental strand, 29867141 - 29867096
Alignment:
Q  281 gtattgattgtatgtctccgtctccaaatcaagagaaacaataaca 326  Q
    ||||||||||||| |||| ||| |||||||||| ||||||||||||    
T  29867141 gtattgattgtatttctcagtccccaaatcaagtgaaacaataaca 29867096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #43
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 132 - 189
Target Start/End: Complemental strand, 36255418 - 36255361
Alignment:
Q  132 ttgagtccaagaatcttcaaccccaaatttcttcatttgccatataacaaaatcagtt 189  Q
    |||||||||||| |||||||| |||||||| | ||||| ||||||||| ||| |||||    
T  36255418 ttgagtccaagactcttcaactccaaatttttccattttccatataactaaaccagtt 36255361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #44
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 116 - 184
Target Start/End: Complemental strand, 19722086 - 19722018
Alignment:
Q  116 aactaattttaagcaattgagtccaagaatcttcaaccccaaatttcttcatttgccatataacaaaat 184  Q
    |||| ||||| || ||||||||||||||||||| ||| ||||||| | |||| | ||||| ||||||||    
T  19722086 aactgattttgaggaattgagtccaagaatcttgaactccaaattccatcatcttccataaaacaaaat 19722018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #45
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 413 - 441
Target Start/End: Complemental strand, 22036820 - 22036792
Alignment:
Q  413 aggaaaactttcaatatttctccaaacat 441  Q
    |||||||||||||||||||||||||||||    
T  22036820 aggaaaactttcaatatttctccaaacat 22036792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #46
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 115 - 191
Target Start/End: Complemental strand, 23993604 - 23993528
Alignment:
Q  115 taactaattttaagcaattgagtccaagaatcttcaaccccaaatttcttcatttgccatataacaaaatcagtttc 191  Q
    |||||||| ||||  |||||||||||||| |||| ||||||  | | |||||| ||||||| |||||| ||||||||    
T  23993604 taactaatcttaaataattgagtccaagactcttgaaccccgtactccttcatatgccataaaacaaattcagtttc 23993528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #47
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 114 - 182
Target Start/End: Original strand, 26003031 - 26003099
Alignment:
Q  114 ataactaattttaagcaattgagtccaagaatcttcaaccccaaatttcttcatttgccatataacaaa 182  Q
    |||||||| ||| | ||||||||||||||||  |||||||||| | |  ||||||||||||| ||||||    
T  26003031 ataactaagtttcaacaattgagtccaagaactttcaaccccatactcattcatttgccataaaacaaa 26003099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #48
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 118 - 190
Target Start/End: Complemental strand, 36260319 - 36260247
Alignment:
Q  118 ctaattttaagcaattgagtccaagaatcttcaaccccaaatttcttcatttgccatataacaaaatcagttt 190  Q
    ||||||||||  | |||| ||||||| |||||||| |||||||  | ||| | ||||||||||||||||||||    
T  36260319 ctaattttaataagttgaatccaagactcttcaactccaaattcttccatcttccatataacaaaatcagttt 36260247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 74; Significance: 1e-33; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 114 - 235
Target Start/End: Complemental strand, 3625804 - 3625683
Alignment:
Q  114 ataactaattttaagcaattgagtccaagaatcttcaaccccaaatttcttcatttgccatataacaaaatcagtttccctgtgtgaataagaaaaacaa 213  Q
    ||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| || ||  ||| || |||  |||||||||||||||    
T  3625804 ataactaattttaagaaattgagtccaagactcttcaaccccaaatttcttcatttgccatataataagataggttaccttgtaagaataagaaaaacaa 3625705  T
Q  214 aggcagcctcccaacacaccaa 235  Q
    |||||| | |||||||||||||    
T  3625704 aggcagtcccccaacacaccaa 3625683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 114 - 184
Target Start/End: Original strand, 25901279 - 25901349
Alignment:
Q  114 ataactaattttaagcaattgagtccaagaatcttcaaccccaaatttcttcatttgccatataacaaaat 184  Q
    |||||||||||| | ||||||| ||||||| |||| ||| | ||| | |||||||| ||||||||||||||    
T  25901279 ataactaatttttaacaattgaatccaagactcttgaactcgaaaatccttcattttccatataacaaaat 25901349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 114 - 184
Target Start/End: Original strand, 25915297 - 25915367
Alignment:
Q  114 ataactaattttaagcaattgagtccaagaatcttcaaccccaaatttcttcatttgccatataacaaaat 184  Q
    |||||||||||| | ||||||| ||||||| |||| ||| | ||| | |||||||| ||||||||||||||    
T  25915297 ataactaatttttaacaattgaatccaagactcttgaactcgaaaatccttcattttccatataacaaaat 25915367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 285 - 326
Target Start/End: Complemental strand, 3625632 - 3625591
Alignment:
Q  285 tgattgtatgtctccgtctccaaatcaagagaaacaataaca 326  Q
    |||||||||||||| ||| |||||||||| ||||||||||||    
T  3625632 tgattgtatgtctcagtccccaaatcaagtgaaacaataaca 3625591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 72; Significance: 1e-32; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 104 - 235
Target Start/End: Complemental strand, 3557806 - 3557675
Alignment:
Q  104 gaagatcactataactaattttaagcaattgagtccaagaatcttcaaccccaaatttcttcatttgccatataacaaaatcagtttccctgtgtgaata 203  Q
    ||||||||  ||||||||||||||| |||||||||||||| |||||||||||||||| |||||| |||||||||| |||||| |||||| |||  |||||    
T  3557806 gaagatcatgataactaattttaagaaattgagtccaagactcttcaaccccaaattccttcatatgccatataataaaatcggtttccttgtaagaata 3557707  T
Q  204 agaaaaacaaaggcagcctcccaacacaccaa 235  Q
    |||||||||||| ||| | | |||||||||||    
T  3557706 agaaaaacaaagacagtccctcaacacaccaa 3557675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 104 - 235
Target Start/End: Original strand, 3560948 - 3561079
Alignment:
Q  104 gaagatcactataactaattttaagcaattgagtccaagaatcttcaaccccaaatttcttcatttgccatataacaaaatcagtttccctgtgtgaata 203  Q
    ||||||||  ||||||||||||||| |||||||||||||| ||||||||||||||||| ||||| ||||| |||| |||||| |||||| |||  |||||    
T  3560948 gaagatcatgataactaattttaagaaattgagtccaagactcttcaaccccaaattttttcatctgccaaataataaaatcggtttccttgtaagaata 3561047  T
Q  204 agaaaaacaaaggcagcctcccaacacaccaa 235  Q
    |||||||||||||||  | ||||| |||||||    
T  3561048 agaaaaacaaaggcaatcccccaagacaccaa 3561079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 104 - 235
Target Start/End: Complemental strand, 3565824 - 3565693
Alignment:
Q  104 gaagatcactataactaattttaagcaattgagtccaagaatcttcaaccccaaatttcttcatttgccatataacaaaatcagtttccctgtgtgaata 203  Q
    ||||||||  ||||||||||||||| |||||||||||||| |||||||||||||||| |||||| |||||||||| |||||| |||| | | |   ||||    
T  3565824 gaagatcatgataactaattttaagaaattgagtccaagactcttcaaccccaaattccttcatctgccatataataaaatcggttttcttataacaata 3565725  T
Q  204 agaaaaacaaaggcagcctcccaacacaccaa 235  Q
    |||||||||||||||| | | |||||||||||    
T  3565724 agaaaaacaaaggcagtccctcaacacaccaa 3565693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 114 - 191
Target Start/End: Complemental strand, 53774910 - 53774833
Alignment:
Q  114 ataactaattttaagcaattgagtccaagaatcttcaaccccaaatttcttcatttgccatataacaaaatcagtttc 191  Q
    ||||||||||||||| |||||||||||||| |||||||| ||||||| ||||||||||||||||||||||| ||||||    
T  53774910 ataactaattttaaggaattgagtccaagactcttcaactccaaattccttcatttgccatataacaaaatgagtttc 53774833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 114 - 190
Target Start/End: Original strand, 11970982 - 11971058
Alignment:
Q  114 ataactaattttaagcaattgagtccaagaatcttcaaccccaaatttcttcatttgccatataacaaaatcagttt 190  Q
    |||||||||| |||| |||||||||||||| ||||| || ||||||| ||||||||||||||||||||||| |||||    
T  11970982 ataactaattctaagaaattgagtccaagactcttccactccaaattccttcatttgccatataacaaaatgagttt 11971058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 115 - 184
Target Start/End: Original strand, 53430100 - 53430169
Alignment:
Q  115 taactaattttaagcaattgagtccaagaatcttcaaccccaaatttcttcatttgccatataacaaaat 184  Q
    |||||||||||||| ||||||||||||||||||||  ||||| |||||||||| |||||||| |||||||    
T  53430100 taactaattttaaggaattgagtccaagaatcttcggccccatatttcttcatctgccatatgacaaaat 53430169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 114 - 190
Target Start/End: Original strand, 11981683 - 11981759
Alignment:
Q  114 ataactaattttaagcaattgagtccaagaatcttcaaccccaaatttcttcatttgccatataacaaaatcagttt 190  Q
    ||||||||||||||| ||| ||||||| || ||||| || ||||||| ||||||||||||||||||||||| |||||    
T  11981683 ataactaattttaagaaatcgagtccaggactcttccactccaaattccttcatttgccatataacaaaatgagttt 11981759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 104 - 235
Target Start/End: Original strand, 1686275 - 1686406
Alignment:
Q  104 gaagatcactataactaattttaagcaattgagtccaagaatcttcaaccccaaatttcttcatttgccatataacaaaatcagtttccctgtgtgaata 203  Q
    ||||||||  |||||||  |||||| |||||||||||||| || ||||| ||||||| |||||| |||||||||| || ||  ||   | | |  |||||    
T  1686275 gaagatcataataactatatttaagaaattgagtccaagactcgtcaacgccaaattccttcatctgccatataataagattggtcctcttataagaata 1686374  T
Q  204 agaaaaacaaaggcagcctcccaacacaccaa 235  Q
    |||||||||||||||| | |||||||||||||    
T  1686375 agaaaaacaaaggcagtcccccaacacaccaa 1686406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 118 - 184
Target Start/End: Complemental strand, 837842 - 837776
Alignment:
Q  118 ctaattttaagcaattgagtccaagaatcttcaaccccaaatttcttcatttgccatataacaaaat 184  Q
    ||||||||||  |||||| ||||||| |||| ||| ||||| |||||||||||||||||||||||||    
T  837842 ctaattttaaataattgaatccaagactcttgaacaccaaaattcttcatttgccatataacaaaat 837776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 406 - 446
Target Start/End: Original strand, 3561311 - 3561351
Alignment:
Q  406 gaacagtaggaaaactttcaatatttctccaaacatcatca 446  Q
    ||||| |||||||||||||||||||||||||||||| ||||    
T  3561311 gaacaataggaaaactttcaatatttctccaaacattatca 3561351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 116 - 189
Target Start/End: Complemental strand, 53790621 - 53790548
Alignment:
Q  116 aactaattttaagcaattgagtccaagaatcttcaaccccaaatttcttcatttgccatataacaaaatcagtt 189  Q
    ||||||||||||| |||||||||||||| | |||||  ||||||||  |||| | |||||||| ||||| ||||    
T  53790621 aactaattttaagaaattgagtccaagattgttcaaatccaaattttgtcatcttccatataataaaatgagtt 53790548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 282 - 326
Target Start/End: Original strand, 1686454 - 1686498
Alignment:
Q  282 tattgattgtatgtctccgtctccaaatcaagagaaacaataaca 326  Q
    ||||||||||||||||| ||| |||||| ||| ||||||||||||    
T  1686454 tattgattgtatgtctcagtccccaaattaagtgaaacaataaca 1686498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 1e-20; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 113 - 184
Target Start/End: Original strand, 6921349 - 6921420
Alignment:
Q  113 tataactaattttaagcaattgagtccaagaatcttcaaccccaaatttcttcatttgccatataacaaaat 184  Q
    |||||||||||||||| |||||||||||||| |||||||| ||||||| |||||||||||| ||||||||||    
T  6921349 tataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaat 6921420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 116 - 184
Target Start/End: Original strand, 6954521 - 6954589
Alignment:
Q  116 aactaattttaagcaattgagtccaagaatcttcaaccccaaatttcttcatttgccatataacaaaat 184  Q
    |||||||||||| ||||||||||||||| |||||||| ||||||| |||||||||||| ||||||||||    
T  6954521 aactaattttaatcaattgagtccaagattcttcaactccaaattccttcatttgccaaataacaaaat 6954589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 114 - 182
Target Start/End: Original strand, 6947880 - 6947948
Alignment:
Q  114 ataactaattttaagcaattgagtccaagaatcttcaaccccaaatttcttcatttgccatataacaaa 182  Q
    ||||||||||||||| |||||||||||||| |||||||| ||||||| |||||||||||| | ||||||    
T  6947880 ataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccaaagaacaaa 6947948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 114 - 190
Target Start/End: Complemental strand, 20770720 - 20770644
Alignment:
Q  114 ataactaattttaagcaattgagtccaagaatcttcaaccccaaatttcttcatttgccatataacaaaatcagttt 190  Q
    ||||||||||||||| |||||| |||| || |||||||  ||||||| ||||||||||||||||||||||| |||||    
T  20770720 ataactaattttaaggaattgaatccatgactcttcaattccaaattccttcatttgccatataacaaaataagttt 20770644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 114 - 173
Target Start/End: Complemental strand, 17369734 - 17369675
Alignment:
Q  114 ataactaattttaagcaattgagtccaagaatcttcaaccccaaatttcttcatttgcca 173  Q
    ||||||||||||||| |||||||||||||| |||||||| ||||||| ||||||||||||    
T  17369734 ataactaattttaagaaattgagtccaagagtcttcaactccaaattccttcatttgcca 17369675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 113 - 180
Target Start/End: Original strand, 6935217 - 6935284
Alignment:
Q  113 tataactaattttaagcaattgagtccaagaatcttcaaccccaaatttcttcatttgccatataaca 180  Q
    |||||||||||||||| |||| ||||||||| |||| ||| ||||||| |||||||||||| ||||||    
T  6935217 tataactaattttaaggaatttagtccaagattcttgaactccaaattccttcatttgccaaataaca 6935284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 113 - 184
Target Start/End: Original strand, 6942966 - 6943037
Alignment:
Q  113 tataactaattttaagcaattgagtccaagaatcttcaaccccaaatttcttcatttgccatataacaaaat 184  Q
    |||| ||||||||||| ||||| ||| |||| |||||||| ||||||| |||||||||| | ||||||||||    
T  6942966 tatatctaattttaaggaattgcgtctaagattcttcaactccaaattccttcatttgctaaataacaaaat 6943037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 135 - 189
Target Start/End: Original strand, 19746715 - 19746769
Alignment:
Q  135 agtccaagaatcttcaaccccaaatttcttcatttgccatataacaaaatcagtt 189  Q
    ||||||||| |||| ||| ||||| ||||||||||||||||||||||| ||||||    
T  19746715 agtccaagactcttgaactccaaacttcttcatttgccatataacaaattcagtt 19746769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 120 - 184
Target Start/End: Original strand, 24950150 - 24950214
Alignment:
Q  120 aattttaagcaattgagtccaagaatcttcaaccccaaatttcttcatttgccatataacaaaat 184  Q
    ||||||||| |||||| ||||||| || ||||| ||||| ||| |||| | ||||||||||||||    
T  24950150 aattttaaggaattgactccaagactcctcaactccaaacttcatcatcttccatataacaaaat 24950214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 113 - 181
Target Start/End: Complemental strand, 14514971 - 14514903
Alignment:
Q  113 tataactaattttaagcaattgagtccaagaatcttcaaccccaaatttcttcatttgccatataacaa 181  Q
    |||||||||||||||| ||||||||||||||||||||||| |||||||  | ||||| |||||||||||    
T  14514971 tataactaattttaaggaattgagtccaagaatcttcaactccaaattcatccattttccatataacaa 14514903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 118 - 184
Target Start/End: Complemental strand, 20975624 - 20975558
Alignment:
Q  118 ctaattttaagcaattgagtccaagaatcttcaaccccaaatttcttcatttgccatataacaaaat 184  Q
    |||| ||||| ||||||| |||||||||||||||| ||||||| | |||||||||||||||||||||    
T  20975624 ctaaatttaaacaattgaatccaagaatcttcaactccaaattccctcatttgccatataacaaaat 20975558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 114 - 178
Target Start/End: Complemental strand, 554546 - 554482
Alignment:
Q  114 ataactaattttaagcaattgagtccaagaatcttcaaccccaaatttcttcatttgccatataa 178  Q
    ||||||||||||||| |||||||||||||| |||| ||| ||| |||   |||||||||||||||    
T  554546 ataactaattttaagtaattgagtccaagactctttaactccatattctatcatttgccatataa 554482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 116 - 184
Target Start/End: Original strand, 18908811 - 18908879
Alignment:
Q  116 aactaattttaagcaattgagtccaagaatcttcaaccccaaatttcttcatttgccatataacaaaat 184  Q
    |||||||||| || |||||||||||||| |||| ||| ||||||| | |||| | ||||||||||||||    
T  18908811 aactaattttgaggaattgagtccaagactcttgaactccaaattccatcatcttccatataacaaaat 18908879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 116 - 184
Target Start/End: Original strand, 18913559 - 18913627
Alignment:
Q  116 aactaattttaagcaattgagtccaagaatcttcaaccccaaatttcttcatttgccatataacaaaat 184  Q
    |||||||||| || |||||||||||||| |||| ||| ||||||| | |||| | ||||||||||||||    
T  18913559 aactaattttgaggaattgagtccaagactcttgaactccaaattccatcatcttccatataacaaaat 18913627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 116 - 184
Target Start/End: Original strand, 18920767 - 18920835
Alignment:
Q  116 aactaattttaagcaattgagtccaagaatcttcaaccccaaatttcttcatttgccatataacaaaat 184  Q
    |||||||||| || |||||||||||||| |||| ||| ||||||| | |||| | ||||||||||||||    
T  18920767 aactaattttgaggaattgagtccaagactcttgaactccaaattccatcatcttccatataacaaaat 18920835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 129 - 184
Target Start/End: Complemental strand, 25698562 - 25698507
Alignment:
Q  129 caattgagtccaagaatcttcaaccccaaatttcttcatttgccatataacaaaat 184  Q
    ||||| ||||||||| |||||||| |||||||   |||||||||||||||||||||    
T  25698562 caatttagtccaagagtcttcaactccaaattctctcatttgccatataacaaaat 25698507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 135 - 185
Target Start/End: Complemental strand, 20967749 - 20967699
Alignment:
Q  135 agtccaagaatcttcaaccccaaatttcttcatttgccatataacaaaatc 185  Q
    ||||||||| |||||| | | ||||||| ||||||||||||||||||||||    
T  20967749 agtccaagactcttcagctctaaatttcgtcatttgccatataacaaaatc 20967699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0867 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: scaffold0867
Description:

Target: scaffold0867; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 114 - 190
Target Start/End: Original strand, 4669 - 4745
Alignment:
Q  114 ataactaattttaagcaattgagtccaagaatcttcaaccccaaatttcttcatttgccatataacaaaatcagttt 190  Q
    |||||||||||| |  || ||||||||||| |||| ||| ||||||||||||||||||||||||| ||||| |||||    
T  4669 ataactaattttgaataactgagtccaagactcttgaactccaaatttcttcatttgccatataataaaatgagttt 4745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0649 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0649
Description:

Target: scaffold0649; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 114 - 192
Target Start/End: Complemental strand, 5508 - 5430
Alignment:
Q  114 ataactaattttaagcaattgagtccaagaatcttcaaccccaaatttcttcatttgccatataacaaaatcagtttcc 192  Q
    |||||||| |||||| ||   ||||||||| |||||||| | |||||| ||||| |||||||||||||||||| |||||    
T  5508 ataactaaatttaaggaacatagtccaagactcttcaactctaaattttttcatctgccatataacaaaatcattttcc 5430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 114 - 190
Target Start/End: Complemental strand, 27618561 - 27618485
Alignment:
Q  114 ataactaattttaagcaattgagtccaagaatcttcaaccccaaatttcttcatttgccatataacaaaatcagttt 190  Q
    |||||||| ||||||||| ||||||||||| |||||||| || | ||  | ||||| |||||||||||||| |||||    
T  27618561 ataactaactttaagcaactgagtccaagactcttcaactccgagttcttccattttccatataacaaaatgagttt 27618485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 114 - 182
Target Start/End: Complemental strand, 29390356 - 29390288
Alignment:
Q  114 ataactaattttaagcaattgagtccaagaatcttcaaccccaaatttcttcatttgccatataacaaa 182  Q
    |||||||| || || ||||| ||| ||||| |||||||| ||||||| | |||| ||||||||||||||    
T  29390356 ataactaaattgaaacaatttagttcaagattcttcaactccaaattccctcatctgccatataacaaa 29390288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0354 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0354
Description:

Target: scaffold0354; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 118 - 176
Target Start/End: Complemental strand, 7529 - 7471
Alignment:
Q  118 ctaattttaagcaattgagtccaagaatcttcaaccccaaatttcttcatttgccatat 176  Q
    ||||||||||| ||||||  |||||| || ||||| ||||||| |||||||||||||||    
T  7529 ctaattttaaggaattgaacccaagactcatcaactccaaattccttcatttgccatat 7471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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