View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19073_low_9 (Length: 481)

Name: NF19073_low_9
Description: NF19073
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19073_low_9
NF19073_low_9
[»] chr3 (7 HSPs)
chr3 (111-343)||(16975129-16975371)
chr3 (184-270)||(7337291-7337377)
chr3 (228-343)||(5004853-5004970)
chr3 (177-281)||(11968077-11968180)
chr3 (227-343)||(46404695-46404814)
chr3 (11-99)||(11968244-11968332)
chr3 (228-329)||(16475278-16475381)
[»] chr7 (12 HSPs)
chr7 (11-263)||(49170491-49170743)
chr7 (335-470)||(48654081-48654216)
chr7 (11-304)||(12196740-12197028)
chr7 (215-343)||(22077620-22077748)
chr7 (184-337)||(48654369-48654522)
chr7 (184-270)||(10289388-10289474)
chr7 (229-343)||(15874070-15874186)
chr7 (244-343)||(21491629-21491732)
chr7 (228-343)||(48576332-48576446)
chr7 (40-137)||(46002990-46003087)
chr7 (227-309)||(18367495-18367577)
chr7 (228-265)||(7503909-7503946)
[»] chr1 (10 HSPs)
chr1 (11-269)||(8421357-8421615)
chr1 (230-340)||(9537492-9537602)
chr1 (227-343)||(35762185-35762303)
chr1 (335-424)||(18473834-18473919)
chr1 (184-269)||(21264799-21264884)
chr1 (215-341)||(37667285-37667412)
chr1 (228-341)||(16074710-16074826)
chr1 (215-268)||(338047-338100)
chr1 (203-270)||(43407964-43408031)
chr1 (392-444)||(33007968-33008019)
[»] chr6 (9 HSPs)
chr6 (335-470)||(13773667-13773801)
chr6 (127-280)||(10751623-10751776)
chr6 (184-336)||(13777241-13777393)
chr6 (229-343)||(34636188-34636304)
chr6 (227-343)||(23260711-23260829)
chr6 (229-326)||(26182602-26182700)
chr6 (210-343)||(32450396-32450530)
chr6 (228-343)||(25005144-25005261)
chr6 (228-303)||(11166587-11166662)
[»] chr2 (9 HSPs)
chr2 (335-467)||(12774658-12774790)
chr2 (335-467)||(28267398-28267531)
chr2 (184-343)||(32735425-32735586)
chr2 (40-238)||(22403559-22403757)
chr2 (71-194)||(36732566-36732689)
chr2 (113-263)||(41340858-41341006)
chr2 (228-337)||(12774947-12775056)
chr2 (244-337)||(28267685-28267778)
chr2 (215-268)||(40447420-40447473)
[»] chr5 (3 HSPs)
chr5 (335-431)||(42861102-42861198)
chr5 (229-343)||(536731-536847)
chr5 (207-343)||(4558105-4558243)
[»] scaffold0413 (1 HSPs)
scaffold0413 (138-335)||(8748-8949)
[»] chr4 (6 HSPs)
chr4 (228-343)||(28969316-28969431)
chr4 (57-193)||(42900730-42900866)
chr4 (212-330)||(69235-69352)
chr4 (261-340)||(49499045-49499126)
chr4 (210-343)||(41868552-41868684)
chr4 (203-268)||(40458881-40458946)
[»] chr8 (3 HSPs)
chr8 (131-249)||(35839004-35839122)
chr8 (1-142)||(24423001-24423142)
chr8 (208-330)||(22816487-22816609)
[»] scaffold1838 (1 HSPs)
scaffold1838 (276-343)||(224-291)


Alignment Details
Target: chr3 (Bit Score: 130; Significance: 4e-67; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 111 - 343
Target Start/End: Original strand, 16975129 - 16975371
Alignment:
Q  111 ttcttcgttttcaacggtccgatcgtccaaataattcctggagtgacagaaaacgtgtctgtaccgtagctgtgagttt-------gaggtagtttagtg 203  Q
    |||||||||||||||||||| |||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||       ||||||||||||||    
T  16975129 ttcttcgttttcaacggtccaatcgtcaaaataattcctggagtgacagaaaatgtgtctgtaccgtagctgtgagtttgaggtttgaggtagtttagtg 16975228  T
Q  204 tttggctaggaaggaaagcttacgaggtaagggctttt-cccccatacgaccatactaagtactaggatgatattatgaattagtggtagagattcttgt 302  Q
    ||||||||||||| |||||||||||||||||||||||| |||||||||   | || ||||||||||||| || ||||||||||| |||||||||||||||    
T  16975229 tttggctaggaagaaaagcttacgaggtaagggcttttccccccatacattcttaataagtactaggattatgttatgaattagaggtagagattcttgt 16975328  T
Q  303 ctgttgagagga--aaaacaactaaaatataaatttatatggt 343  Q
     |||||| | ||  |||||||||||||||| |||| |||||||    
T  16975329 ttgttgaaaagaacaaaacaactaaaatatgaattcatatggt 16975371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 184 - 270
Target Start/End: Complemental strand, 7337377 - 7337291
Alignment:
Q  184 gagtttgaggtagtttagtgtttggctaggaaggaaagcttacgaggtaagggcttttcccccatacgaccatactaagtactagga 270  Q
    ||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| ||||||    
T  7337377 gagtttgaggtggtttagagtttggctaggaaggaaagcttacgaggtaagggctttttccccatacgtccatactaagtgctagga 7337291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 228 - 343
Target Start/End: Complemental strand, 5004970 - 5004853
Alignment:
Q  228 aggtaagggcttttcccccatacgaccatactaagtactaggatgatattatgaattagtggtagagattcttgtctgttgagagga--aaaacaactaa 325  Q
    |||||||||||||| |||||||||  | |||||||||||||||| || ||||||||||| ||||||||||||||||| |||| | ||  |||||||||||    
T  5004970 aggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattagaggtagagattcttgtcttttgaaaagaacaaaacaactaa 5004871  T
Q  326 aatataaatttatatggt 343  Q
    ||||| ||||||||||||    
T  5004870 aatatgaatttatatggt 5004853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 177 - 281
Target Start/End: Complemental strand, 11968180 - 11968077
Alignment:
Q  177 tagctgtgagtttgaggtagtttagtgtttggctaggaaggaaagcttacgaggtaagggcttttcccccatacgaccatactaagtactaggatgatat 276  Q
    |||||||||||||||||| |||||| |||||||||||||| |||| |  ||||||||||| ||||  |||||||| |||||||||||||||||||||| |    
T  11968180 tagctgtgagtttgaggtggtttagagtttggctaggaagaaaagttctcgaggtaaggg-ttttttcccatacgtccatactaagtactaggatgatgt 11968082  T
Q  277 tatga 281  Q
    |||||    
T  11968081 tatga 11968077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 227 - 343
Target Start/End: Complemental strand, 46404814 - 46404695
Alignment:
Q  227 gaggtaagggcttttc-ccccatacgaccatactaagtactaggatgatattatgaattagtggtagagattcttgtctgttgagagga--aaaacaact 323  Q
    |||||||||||||||  |||||||||  | |||||||||||||||| || ||||||||||| |||||||||||||||||||||| | ||  |||||||||    
T  46404814 gaggtaagggcttttttccccatacgttcttactaagtactaggattatgttatgaattagaggtagagattcttgtctgttgaaaagaacaaaacaact 46404715  T
Q  324 aaaatataaatttatatggt 343  Q
    ||||||| |||| |||||||    
T  46404714 aaaatatgaattcatatggt 46404695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 11 - 99
Target Start/End: Complemental strand, 11968332 - 11968244
Alignment:
Q  11 attttcgtttttctcaaacctgtcatcgtagaattgtgactacaccttcattcaccgtccgattgggctaatttttggacagcgtgttc 99  Q
    ||||| |||||  ||||||||||||||||||||||| ||||||  |||| ||||| ||| ||||| ||||||| |||||||||||||||    
T  11968332 atttttgttttcttcaaacctgtcatcgtagaattgcgactacggcttcgttcactgtctgattgagctaattattggacagcgtgttc 11968244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 228 - 329
Target Start/End: Original strand, 16475278 - 16475381
Alignment:
Q  228 aggtaagggcttttcccccatacgaccatactaagtactaggatgatattatgaattagtggtagagattcttgtctgttgagagga--aaaacaactaa 325  Q
    ||||||| | |||| |||||||||  | |||||||||||| ||| || ||||||||||| |||||||||||||||||||||| | ||  |||||||||||    
T  16475278 aggtaagagttttttccccatacgttcttactaagtactaagattatgttatgaattagaggtagagattcttgtctgttgaaaagaacaaaacaactaa 16475377  T
Q  326 aata 329  Q
    ||||    
T  16475378 aata 16475381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 129; Significance: 1e-66; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 11 - 263
Target Start/End: Complemental strand, 49170743 - 49170491
Alignment:
Q  11 attttcgtttttctcaaacctgtcatcgtagaattgtgactacaccttcattcaccgtccgattgggctaatttttggacagcgtgttcaagacatgcgg 110  Q
    ||||||||||| ||||||| |||||||||||||||| ||||||  |||| ||||||||||||||| ||||||||||||| |||||||||   ||||||||    
T  49170743 attttcgttttcctcaaacatgtcatcgtagaattgcgactacggcttcgttcaccgtccgattgagctaatttttggaaagcgtgttcccaacatgcgg 49170644  T
Q  111 ttcttcgttttcaacggtccgatcgtccaaataattcctggagtgacagaaaacgtgtctgtaccgtagctgtgagtttgaggtagtttagtgtttggct 210  Q
    ||||||  ||||||||||||||||||| || ||  ||||||||||| |||||||||||||  |||||||||||||||||||||| |||||| ||| | ||    
T  49170643 ttcttcaatttcaacggtccgatcgtcaaactatctcctggagtgagagaaaacgtgtcttcaccgtagctgtgagtttgaggtggtttagagttcgact 49170544  T
Q  211 aggaaggaaagcttacgaggtaagggcttttcccccatacgaccatactaagt 263  Q
    || ||| ||||||  ||||||||||| |||| ||||||||| |||||||||||    
T  49170543 agaaagaaaagctctcgaggtaagggttttttccccatacgtccatactaagt 49170491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 335 - 470
Target Start/End: Complemental strand, 48654216 - 48654081
Alignment:
Q  335 ttatatggttgctgaaattcttcctggataaattaataaatgtttaattttattatagtatatatgtgactatattatttcccggagaaaaatgcttgta 434  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  48654216 ttatatggttgctgaaattcttcctggataaattaataaatgtttaattttattatagtatatatgtgactatattatttaccggagaaaaatgcttgta 48654117  T
Q  435 gtgttatttttagcatatatgtgcctatatattctt 470  Q
     ||||||||||||||||||||||   ||||||||||    
T  48654116 ttgttatttttagcatatatgtggtgatatattctt 48654081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 11 - 304
Target Start/End: Complemental strand, 12197028 - 12196740
Alignment:
Q  11 attttcgtttttctcaaacctgtcatcgtagaattgtgactacaccttcattcaccgtccgattgggctaatttttggacagcgtgttcaagacatgcgg 110  Q
    ||||||||||| || |||||||||||||||||||||  ||||| ||||| ||||| ||||||| | |||||| |||||| | | |||||    |||| ||    
T  12197028 attttcgttttcctaaaacctgtcatcgtagaattgcaactacgccttcgttcacggtccgatggagctaatatttggaaaacatgttctcagcatgtgg 12196929  T
Q  111 ttcttcgttttcaacggtccgatcgtccaaataattcctggagtgacagaaaacgtgtctgtaccgtagctgtgagtttgaggtagtttagtgtttggct 210  Q
    || |||||||      ||  ||||||| |||||||||||||||||| |||||||||||||| |||||||||||||||||||||| |||||| ||| ||||    
T  12196928 tttttcgtttc-----gtttgatcgtcaaaataattcctggagtgagagaaaacgtgtctgcaccgtagctgtgagtttgaggtggtttagagttcggct 12196834  T
Q  211 aggaaggaaagcttacgaggtaagggcttttcccccatacgaccatactaagtactaggatgatattatgaattagtggtagagattcttgtct 304  Q
    |||||| ||| ||||| |||||||||||||| ||||||||   | |||||||| | ||||  || |||| || |||||||||  ||||||||||    
T  12196833 aggaagaaaaacttacaaggtaagggctttttccccatacattcttactaagtgcaaggactatgttattaaatagtggtagcaattcttgtct 12196740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 215 - 343
Target Start/End: Original strand, 22077620 - 22077748
Alignment:
Q  215 aggaaagcttacgaggtaagggcttttcccccatacgaccatactaagtactaggatgatattatgaattagtggtagagattcttgtctgttgagagga 314  Q
    ||||||||||| |||||||||||||||  |||||| |  ||||||||||||||||||||| ||||||||||| |||||||||||||||||||| ||| ||    
T  22077620 aggaaagcttatgaggtaagggcttttttcccatatgttcatactaagtactaggatgatgttatgaattagaggtagagattcttgtctgttaagaaga 22077719  T
Q  315 aaaacaactaaaatataaatttatatggt 343  Q
    |||||||||||||||||||||||||||||    
T  22077720 aaaacaactaaaatataaatttatatggt 22077748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 184 - 337
Target Start/End: Complemental strand, 48654522 - 48654369
Alignment:
Q  184 gagtttgaggtagtttagtgtttggctaggaaggaaagcttacgaggtaagggcttttcccccatacgaccatactaagtactaggatgatattatgaat 283  Q
    ||||||||||| |||||| ||| |||||||||  ||||||| ||||||||||| |||| ||||||||| |||||||||||||||||||||| || |||||    
T  48654522 gagtttgaggtggtttagagttcggctaggaacaaaagctttcgaggtaagggttttttccccatacgtccatactaagtactaggatgatgttgtgaat 48654423  T
Q  284 tagtggtagagattcttgtctgttgagaggaaaaacaactaaaatataaattta 337  Q
    |||  ||| | |||||||||| |||  | ||||||||||||||||||| |||||    
T  48654422 tagaagtacaaattcttgtcttttggaaagaaaaacaactaaaatatatattta 48654369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 184 - 270
Target Start/End: Complemental strand, 10289474 - 10289388
Alignment:
Q  184 gagtttgaggtagtttagtgtttggctaggaaggaaagcttacgaggtaagggcttttcccccatacgaccatactaagtactagga 270  Q
    ||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| ||||||    
T  10289474 gagtttgaggtggtttagagtttggctaggaaggaaagcttacgaggtaagggctttttccccatacgtccatactaagtgctagga 10289388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 229 - 343
Target Start/End: Complemental strand, 15874186 - 15874070
Alignment:
Q  229 ggtaagggcttttcccccatacgaccatactaagtactaggatgatattatgaattagtggtagagattcttgtctgttgagagga--aaaacaactaaa 326  Q
    ||||||||||||| |||||||||  | |||||||||||||||| || ||||||||||| ||||||||||||||| |||||| | ||  ||||||||||||    
T  15874186 ggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattagaggtagagattcttgtatgttgaaaagaacaaaacaactaaa 15874087  T
Q  327 atataaatttatatggt 343  Q
    |||| |||| |||||||    
T  15874086 atatgaattcatatggt 15874070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 244 - 343
Target Start/End: Complemental strand, 21491732 - 21491629
Alignment:
Q  244 cccatacgaccatactaagtactaggatgatattatgaattagtggtagagattcttgtctgttgagagga----aaaacaactaaaatataaatttata 339  Q
    |||||||| |||||||||||||||||||||| ||||||||||| |||||||||||||||| ||||| | ||    |||| ||||||||||| ||||||||    
T  21491732 cccatacgtccatactaagtactaggatgatgttatgaattagaggtagagattcttgtcggttgaaaagaagacaaaaaaactaaaatatgaatttata 21491633  T
Q  340 tggt 343  Q
    ||||    
T  21491632 tggt 21491629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 228 - 343
Target Start/End: Original strand, 48576332 - 48576446
Alignment:
Q  228 aggtaagggcttttcccccatacgaccatactaagtactaggatgatattatgaattagtggtagagattcttgtctgttgagaggaaaaacaactaaaa 327  Q
    |||||||||||||| ||||||||| |||||||||||||| |||| || ||||||||||| ||||||||||||| || ||| | | | |||| || |||||    
T  48576332 aggtaagggctttttccccatacgtccatactaagtactgggataatgttatgaattagaggtagagattcttatccgttaaaaag-aaaataattaaaa 48576430  T
Q  328 tataaatttatatggt 343  Q
    ||| ||||||||||||    
T  48576431 tatgaatttatatggt 48576446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 40 - 137
Target Start/End: Complemental strand, 46003087 - 46002990
Alignment:
Q  40 agaattgtgactacaccttcattcaccgtccgattgggctaatttttggacagcgtgttcaagacatgcggttcttcgttttcaacggtccgatcgtc 137  Q
    |||||||||||| ||| ||| || ||| |  |||||||||||||||| ||||| |||||||  ||||| ||||||||||||||||| |||||||||||    
T  46003087 agaattgtgactgcactttcgtttaccatttgattgggctaatttttagacagagtgttcacaacatgtggttcttcgttttcaacagtccgatcgtc 46002990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 227 - 309
Target Start/End: Complemental strand, 18367577 - 18367495
Alignment:
Q  227 gaggtaagggcttttcccccatacgaccatactaagtactaggatgatattatgaattagtggtagagattcttgtctgttga 309  Q
    ||||||||||||||| ||| ||||| ||||| |||| ||||||| ||| ||||||||||  ||||||||||||||| ||||||    
T  18367577 gaggtaagggctttttccctatacgtccataataagaactaggacgatgttatgaattaaaggtagagattcttgtttgttga 18367495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 228 - 265
Target Start/End: Original strand, 7503909 - 7503946
Alignment:
Q  228 aggtaagggcttttcccccatacgaccatactaagtac 265  Q
    |||||||||||||| ||||||||| |||||||||||||    
T  7503909 aggtaagggctttttccccatacgtccatactaagtac 7503946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 119; Significance: 1e-60; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 11 - 269
Target Start/End: Original strand, 8421357 - 8421615
Alignment:
Q  11 attttcgtttttctcaaacctgtcatcgtagaattgtgactacaccttcattcaccgtccgattgggctaatttttggacagcgtgttcaagacatgcgg 110  Q
    ||||||||||| ||||||| |||||||||||||||| || ||| ||||| ||||||||||||||| ||| |||||||||||||||||||   ||||||||    
T  8421357 attttcgttttcctcaaacatgtcatcgtagaattgcgattacgccttcgttcaccgtccgattgagctcatttttggacagcgtgttcccaacatgcgg 8421456  T
Q  111 ttcttcgttttcaacggtccgatcgtccaaataattcctggagtgacagaaaacgtgtctgtaccgtagctgtgagtttgaggtagtttagtgtttggct 210  Q
    ||||||| ||||||||||||| ||||| || ||| ||||||| ||| ||||| | |||||  |||||||||||||||||||||| |||||| ||| | ||    
T  8421457 ttcttcgatttcaacggtccggtcgtcaaactaactcctggactgagagaaaccatgtcttcaccgtagctgtgagtttgaggtggtttagagttcgact 8421556  T
Q  211 aggaaggaaagcttacgaggtaagggcttttcccccatacgaccatactaagtactagg 269  Q
    || ||| ||||||  | |||||||||||||| |||||||||  |||||||||| |||||    
T  8421557 agaaagaaaagctctcaaggtaagggctttttccccatacgtacatactaagtgctagg 8421615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 230 - 340
Target Start/End: Complemental strand, 9537602 - 9537492
Alignment:
Q  230 gtaagggcttttcccccatacgaccatactaagtactaggatgatattatgaattagtggtagagattcttgtctgttgagaggaaaaacaactaaaata 329  Q
    |||||||||||| || |||||| ||||||| |||||||||||||| ||||||||||| |||| ||||||||||||||||||| ||||||||| |||||||    
T  9537602 gtaagggcttttacctcatacgtccatactgagtactaggatgatgttatgaattagaggtatagattcttgtctgttgagaagaaaaacaagtaaaata 9537503  T
Q  330 taaatttatat 340  Q
    |||||||||||    
T  9537502 taaatttatat 9537492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 227 - 343
Target Start/End: Complemental strand, 35762303 - 35762185
Alignment:
Q  227 gaggtaagggcttttcccccatacgaccatactaagtactaggatgatattatgaattagtggtagagattcttgtctgttgagagga--aaaacaacta 324  Q
    ||||||||||||||| ||||||||| ||||||||||||||||||| || ||||||||||| ||||||||||||||| |||||| | ||  ||||||||||    
T  35762303 gaggtaagggctttttccccatacgtccatactaagtactaggattatgttatgaattagaggtagagattcttgtatgttgaaaagaacaaaacaacta 35762204  T
Q  325 aaatataaatttatatggt 343  Q
    |||||| ||||||||||||    
T  35762203 aaatatgaatttatatggt 35762185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 335 - 424
Target Start/End: Complemental strand, 18473919 - 18473834
Alignment:
Q  335 ttatatggttgctgaaattcttcctggataaattaataaatgtttaattttattatagtatatatgtgactatattatttcccggagaaa 424  Q
    ||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||  ||||||||||||||||||    
T  18473919 ttatatggttgctgaaattcttcctggataaattaa--aatgtttaattttattatagtatatatgtgac--tattatttcccggagaaa 18473834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 184 - 269
Target Start/End: Complemental strand, 21264884 - 21264799
Alignment:
Q  184 gagtttgaggtagtttagtgtttggctaggaaggaaagcttacgaggtaagggcttttcccccatacgaccatactaagtactagg 269  Q
    ||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||| |||||||||  | |||||||| |||||    
T  21264884 gagtttgaggtggtttagagtttggctaggaaggaaagcttacgaggtaagggctttttccccatacgttcttactaagtgctagg 21264799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 215 - 341
Target Start/End: Complemental strand, 37667412 - 37667285
Alignment:
Q  215 aggaaagcttacgaggtaagggcttttcccccatacgaccatactaagtactaggatgatattatgaattagtggtagagattcttgtctgttgagagga 314  Q
    ||||||||||| ||||||||| ||||| |||||||||  | ||||||||| |||||| || ||||||||||| |||||||||||||||||||||| | ||    
T  37667412 aggaaagcttatgaggtaagg-ctttttccccatacgttcttactaagtaataggattatgttatgaattagaggtagagattcttgtctgttgaaaaga 37667314  T
Q  315 --aaaacaactaaaatataaatttatatg 341  Q
      |||||||||||||||| |||| |||||    
T  37667313 acaaaacaactaaaatatgaattcatatg 37667285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 228 - 341
Target Start/End: Original strand, 16074710 - 16074826
Alignment:
Q  228 aggtaagggcttttcccccatacgaccatactaagtactaggatg---atattatgaattagtggtagagattcttgtctgttgagaggaaaaacaacta 324  Q
    ||||||||||||||  ||||||||  ||||||||||||| |||||   |||||||||||||| | |||||||| ||||| ||| | | ||||||||| ||    
T  16074710 aggtaagggcttttttcccatacgttcatactaagtactgggatgatgatattatgaattagagatagagatttttgtccgttaaaaagaaaaacaatta 16074809  T
Q  325 aaatataaatttatatg 341  Q
    |||||| |||| |||||    
T  16074810 aaatatgaattcatatg 16074826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 215 - 268
Target Start/End: Original strand, 338047 - 338100
Alignment:
Q  215 aggaaagcttacgaggtaagggcttttcccccatacgaccatactaagtactag 268  Q
    ||||||||||||||||||||||||||| ||||||||| ||||||||||| ||||    
T  338047 aggaaagcttacgaggtaagggctttttccccatacgtccatactaagtgctag 338100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 203 - 270
Target Start/End: Complemental strand, 43408031 - 43407964
Alignment:
Q  203 gtttggctaggaaggaaagcttacgaggtaagggcttttcccccatacgaccatactaagtactagga 270  Q
    ||||| |||||||| ||||||  |||||||||||||||| ||||||||| ||||||||||| ||||||    
T  43408031 gtttgactaggaagaaaagctctcgaggtaagggctttttccccatacgtccatactaagtgctagga 43407964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 392 - 444
Target Start/End: Complemental strand, 33008019 - 33007968
Alignment:
Q  392 gtatatatgtgactatattatttcccggagaaaaatgcttgtagtgttatttt 444  Q
    |||||||||| |||||||||||||| |||||||||| ||||| ||||||||||    
T  33008019 gtatatatgt-actatattatttcctggagaaaaatacttgtggtgttatttt 33007968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 116; Significance: 8e-59; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 335 - 470
Target Start/End: Complemental strand, 13773801 - 13773667
Alignment:
Q  335 ttatatggttgctgaaattcttcctggataaattaataaatgtttaattttattatagtatatatgtgactatattatttcccggagaaaaatgcttgta 434  Q
    |||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  13773801 ttatatggttgctgaaattcttcctgaataaattaataaat-tttaattttattatagtatatatgtgactatattatttcctggagaaaaatgcttgta 13773703  T
Q  435 gtgttatttttagcatatatgtgcctatatattctt 470  Q
    ||||||||||||||||||||||| ||||||||||||    
T  13773702 gtgttatttttagcatatatgtggctatatattctt 13773667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 127 - 280
Target Start/End: Complemental strand, 10751776 - 10751623
Alignment:
Q  127 gtccgatcgtccaaataattcctggagtgacagaaaacgtgtctgtaccgtagctgtgagtttgaggtagtttagtgtttggctaggaaggaaagcttac 226  Q
    ||||||||||| |||||||||||||||||||||||||||||| || || |||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  10751776 gtccgatcgtcaaaataattcctggagtgacagaaaacgtgtttgaacagtagctgtgagtttgaggtagtttagtgtttggctaggaatgaaagcttac 10751677  T
Q  227 gaggtaagggcttttcccccatacgaccatactaagtactaggatgatattatg 280  Q
    ||||||||||| ||| ||||||||   | |||||||||||| ||| || |||||    
T  10751676 gaggtaagggccttttccccatacattcttactaagtactatgataatgttatg 10751623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 184 - 336
Target Start/End: Complemental strand, 13777393 - 13777241
Alignment:
Q  184 gagtttgaggtagtttagtgtttggctaggaaggaaagcttacgaggtaagggcttttcccccatacgaccatactaagtactaggatgatattatgaat 283  Q
    ||||||||||| |||||| ||||||||||||||||||||||||||||||||| ||||| |||| |||| ||||| ||| |||||||||||| || |||||    
T  13777393 gagtttgaggtggtttagagtttggctaggaaggaaagcttacgaggtaaggactttttccccgtacgtccataataaatactaggatgatgttgtgaat 13777294  T
Q  284 tagtggtagagattcttgtctgttgagaggaaaaacaactaaaatataaattt 336  Q
    |||  ||| | |||||| ||| |||  | ||||||||||||||||||| ||||    
T  13777293 tagaagtacaaattcttatcttttggaaagaaaaacaactaaaatatatattt 13777241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 229 - 343
Target Start/End: Original strand, 34636188 - 34636304
Alignment:
Q  229 ggtaagggcttttcccccatacgaccatactaagtactaggatgatattatgaattagtggtagagattcttgtctgttgagagga--aaaacaactaaa 326  Q
    ||||||||||||| |||||||||  | |||||||||||||||| || ||||||||||| |||||||||||||||||||||| | ||  ||||||||||||    
T  34636188 ggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattagaggtagagattcttgtctgttgaaaagaacaaaacaactaaa 34636287  T
Q  327 atataaatttatatggt 343  Q
    |||| |||| |||||||    
T  34636288 atatgaattcatatggt 34636304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 227 - 343
Target Start/End: Complemental strand, 23260829 - 23260711
Alignment:
Q  227 gaggtaagggcttttcccccatacgaccatactaagtactaggatgatattatgaattagtggtagagattcttgtctgttgagagga--aaaacaacta 324  Q
    ||||||||||||||| |||||||||  | ||||||||| |||||| || ||||||||||| ||||||||||||||||| |||| | ||  ||||||||||    
T  23260829 gaggtaagggctttttccccatacgttcttactaagtattaggattatgttatgaattagaggtagagattcttgtctcttgaaaagaacaaaacaacta 23260730  T
Q  325 aaatataaatttatatggt 343  Q
    |||||| |||| |||||||    
T  23260729 aaatatgaattcatatggt 23260711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 229 - 326
Target Start/End: Complemental strand, 26182700 - 26182602
Alignment:
Q  229 ggtaagggcttttcccccatacgaccatactaagtactaggatgatattatgaattagtggtagagattcttgtctgttgag-aggaaaaacaactaaa 326  Q
    ||||||||||||| ||||||| | |||||||||||| ||||||||| ||||||||||| | ||||||||||||| ||||||| || |||||||||||||    
T  26182700 ggtaagggctttttccccatatgtccatactaagtattaggatgatgttatgaattagagttagagattcttgtatgttgagaagaaaaaacaactaaa 26182602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 210 - 343
Target Start/End: Complemental strand, 32450530 - 32450396
Alignment:
Q  210 taggaaggaaagcttacgaggtaagggcttttcccccatacgaccatactaagtactaggatgatattatgaattagtggtagagattcttgtctgttga 309  Q
    ||||||||||| | | | ||||||||||||||||||  ||||  | ||||||||||||||||  | ||||||||||| ||||||||||||||||||||||    
T  32450530 taggaaggaaaacatgcaaggtaagggcttttccccg-tacgttcttactaagtactaggattgtgttatgaattagaggtagagattcttgtctgttga 32450432  T
Q  310 gagga--aaaacaactaaaatataaatttatatggt 343  Q
     | ||  |||||||||||||||| |||| |||||||    
T  32450431 aaagaacaaaacaactaaaatatgaattcatatggt 32450396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 228 - 343
Target Start/End: Original strand, 25005144 - 25005261
Alignment:
Q  228 aggtaagggcttttcccccatacgaccatactaagtactaggatgatattatgaattagtggtagagattcttgtctgttgagagga--aaaacaactaa 325  Q
    ||||||| | |||| |||||||||  | |||||||||||| ||| || ||||||||||| |||||||||||||||||||||| | ||  |||||||||||    
T  25005144 aggtaagagttttttccccatacgttcttactaagtactaagattatgttatgaattagaggtagagattcttgtctgttgaaaagaacaaaacaactaa 25005243  T
Q  326 aatataaatttatatggt 343  Q
    ||||  |||| |||||||    
T  25005244 aataagaattcatatggt 25005261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 228 - 303
Target Start/End: Complemental strand, 11166662 - 11166587
Alignment:
Q  228 aggtaagggcttttcccccatacgaccatactaagtactaggatgatattatgaattagtggtagagattcttgtc 303  Q
    |||||||||||||| |||||||||  | ||||||||  ||||||  ||||||||| |||||||||||||| |||||    
T  11166662 aggtaagggctttttccccatacgttcttactaagtgttaggatcttattatgaaatagtggtagagatttttgtc 11166587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 113; Significance: 5e-57; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 335 - 467
Target Start/End: Complemental strand, 12774790 - 12774658
Alignment:
Q  335 ttatatggttgctgaaattcttcctggataaattaataaatgtttaattttattatagtatatatgtgactatattatttcccggagaaaaatgcttgta 434  Q
    |||||||||||||||||||||||||||||||||||||||||| |||| ||||| |||||||||||||||||||||||||||| |||||||||||||||||    
T  12774790 ttatatggttgctgaaattcttcctggataaattaataaatgcttaaatttatcatagtatatatgtgactatattatttcctggagaaaaatgcttgta 12774691  T
Q  435 gtgttatttttagcatatatgtgcctatatatt 467  Q
    ||||||||||||||||||||||| |||||||||    
T  12774690 gtgttatttttagcatatatgtggctatatatt 12774658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 335 - 467
Target Start/End: Complemental strand, 28267531 - 28267398
Alignment:
Q  335 ttatatggttgctgaaattcttcctggataaattaataaatgtttaattttattatagtatatatgtgactatattatttcccggagaaaaatgcttgta 434  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||| | |||||||||||||||    
T  28267531 ttatatggttgctgaaattcttcctggataaattaataaatgtttaaatctattatagtatatatgtgactatattatttcctgtagaaaaatgcttgta 28267432  T
Q  435 gtgttatttttagc-atatatgtgcctatatatt 467  Q
    |||||||||||||| ||||||||| |||||||||    
T  28267431 gtgttatttttagcaatatatgtggctatatatt 28267398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 184 - 343
Target Start/End: Complemental strand, 32735586 - 32735425
Alignment:
Q  184 gagtttgaggtagtttagtgtttggctaggaaggaaagcttacgaggtaagggcttttcccccatacgaccatactaagtactaggatgatattatgaat 283  Q
    ||||||||||| |||||| ||| |||||||||| ||||||  |||||||||||||||| |||||||||  | |||||||| ||||||| || ||||||||    
T  32735586 gagtttgaggtggtttagagttcggctaggaagaaaagctctcgaggtaagggctttttccccatacgttcttactaagtgctaggattatgttatgaat 32735487  T
Q  284 tagtggtagagattcttgtctgttgagagga--aaaacaactaaaatataaatttatatggt 343  Q
    ||| |||||||||||||||||||||| | ||  ||||||||||||||||  ||| |||||||    
T  32735486 tagaggtagagattcttgtctgttgaaaagaacaaaacaactaaaatatgcattcatatggt 32735425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 40 - 238
Target Start/End: Original strand, 22403559 - 22403757
Alignment:
Q  40 agaattgtgactacaccttcattcaccgtccgattgggctaatttttggacagcgtgttcaagacatgcggttcttcgttttcaacggtccgatcgtcca 139  Q
    ||||||||| |||| ||||| |||||||| | |||| |||||||||||| |||| ||||    |||||| ||||||| |||||||||| | ||||||| |    
T  22403559 agaattgtgtctacgccttcgttcaccgttcaattgagctaatttttgggcagcatgtttgcaacatgcagttcttcattttcaacggcctgatcgtcaa 22403658  T
Q  140 aataattcctggagtgacagaaaacgtgtctgtaccgtagctgtgagtttgaggtagtttagtgtttggctaggaaggaaagcttacgaggtaagggct 238  Q
    | ||||  |||||| || ||||| |||||||| ||||||||||||||||| |||| |||||| ||| |||||||||| |||| |  |||||||||||||    
T  22403659 attaatgactggagcgagagaaatcgtgtctgcaccgtagctgtgagtttaaggtggtttagagttcggctaggaagaaaagatctcgaggtaagggct 22403757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 71 - 194
Target Start/End: Complemental strand, 36732689 - 36732566
Alignment:
Q  71 gattgggctaatttttggacagcgtgttcaagacatgcggttcttcgttttcaacggtccgatcgtccaaataattcctggagtgacagaaaacgtgtct 170  Q
    |||||||||||||||||| |||| |||||    |||| ||||||||||||||||||||||||||||| |||||||||||||||||| |||||| ||||||    
T  36732689 gattgggctaatttttgggcagcatgttcttcgcatgtggttcttcgttttcaacggtccgatcgtcaaaataattcctggagtgagagaaaatgtgtct 36732590  T
Q  171 gtaccgtagctgtgagtttgaggt 194  Q
    | || |||| | ||||||||||||    
T  36732589 gcacagtagttatgagtttgaggt 36732566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 113 - 263
Target Start/End: Complemental strand, 41341006 - 41340858
Alignment:
Q  113 cttcgttttcaacggtccgatcgtccaaataattcctggagtgacagaaaacgtgtctgtaccgtagctgtgagtttgaggtagtttagtgtttggctag 212  Q
    ||||||||||||| ||||   |||| ||||||||| |||||||| |||||||||||||  ||||||| |||||||||||||| |||||| ||| | ||||    
T  41341006 cttcgttttcaaccgtccatccgtc-aaataattcttggagtgagagaaaacgtgtcttaaccgtagttgtgagtttgaggttgtttagagttcgcctag 41340908  T
Q  213 gaaggaaagcttacgaggtaagggcttttcccccatacgaccatactaagt 263  Q
    |||| ||||||  | ||||||||||||||  |||||||| |||||||||||    
T  41340907 gaagaaaagctctctaggtaagggctttt-tcccatacgtccatactaagt 41340858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 228 - 337
Target Start/End: Complemental strand, 12775056 - 12774947
Alignment:
Q  228 aggtaagggcttttcccccatacgaccatactaagtactaggatgatattatgaattagtggtagagattcttgtctgttgagaggaaaaacaactaaaa 327  Q
    |||||||||||||| ||||||||| |||||| ||||||||||||||| || ||||||||  ||| | |||||| ||| |||  | |||||||||||||||    
T  12775056 aggtaagggctttttccccatacgtccatacaaagtactaggatgatgttgtgaattagaagtacaaattcttatcttttggaaagaaaaacaactaaaa 12774957  T
Q  328 tataaattta 337  Q
    |||| |||||    
T  12774956 tatatattta 12774947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 244 - 337
Target Start/End: Complemental strand, 28267778 - 28267685
Alignment:
Q  244 cccatacgaccatactaagtactaggatgatattatgaattagtggtagagattcttgtctgttgagaggaaaaacaactaaaatataaattta 337  Q
    |||||||| |||||||||||||||||||||| || ||||||||  ||| | |||||| ||| |||| | ||||||||||||||||||| |||||    
T  28267778 cccatacgtccatactaagtactaggatgatgttgtgaattagaagtacaaattcttatcttttgaaaagaaaaacaactaaaatatatattta 28267685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 215 - 268
Target Start/End: Original strand, 40447420 - 40447473
Alignment:
Q  215 aggaaagcttacgaggtaagggcttttcccccatacgaccatactaagtactag 268  Q
    ||||||||||||||||||||||||||| ||||||||| ||||||||||| ||||    
T  40447420 aggaaagcttacgaggtaagggctttttccccatacgtccatactaagtgctag 40447473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 93; Significance: 4e-45; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 335 - 431
Target Start/End: Original strand, 42861102 - 42861198
Alignment:
Q  335 ttatatggttgctgaaattcttcctggataaattaataaatgtttaattttattatagtatatatgtgactatattatttcccggagaaaaatgctt 431  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  42861102 ttatatggttgctgaaattcttcctggataaattaataaatgtttaattatattatagtatatatgtgactatattatttcccggagaaaaatgctt 42861198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 229 - 343
Target Start/End: Original strand, 536731 - 536847
Alignment:
Q  229 ggtaagggcttttcccccatacgaccatactaagtactaggatgatattatgaattagtggtagagattcttgtctgttgagagga--aaaacaactaaa 326  Q
    ||||||||||||| |||||||||  | |||||||||||||||| || ||||||||||| |||||||||||||||||||||| | ||  ||||||||||||    
T  536731 ggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattagaggtagagattcttgtctgttgaaaagaacaaaacaactaaa 536830  T
Q  327 atataaatttatatggt 343  Q
    |||| |||| |||||||    
T  536831 atatgaattcatatggt 536847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 207 - 343
Target Start/End: Complemental strand, 4558243 - 4558105
Alignment:
Q  207 ggctaggaaggaaagcttacgaggtaagggcttttcccccatacgaccatactaagtactaggatgatattatgaattagtggtagagattcttgtctgt 306  Q
    |||||||| | ||| | |||||||||||||||||| ||| ||||| | |||||||||| ||||||||| |||||| |||| |||||||||||||||||||    
T  4558243 ggctaggaggtaaaacgtacgaggtaagggctttttccc-atacgtctatactaagtattaggatgatgttatgatttagaggtagagattcttgtctgt 4558145  T
Q  307 tgagagga---aaaacaactaaaatataaatttatatggt 343  Q
    ||||| ||   |||| ||||||||||| ||||||||||||    
T  4558144 tgagaagagagaaaaaaactaaaatatgaatttatatggt 4558105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0413 (Bit Score: 84; Significance: 1e-39; HSPs: 1)
Name: scaffold0413
Description:

Target: scaffold0413; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 138 - 335
Target Start/End: Original strand, 8748 - 8949
Alignment:
Q  138 caaataattcctggagtgacagaaaacgtgtctgtaccgtagc--tgtgagtttgaggtagtttagtgtttggctaggaaggaaagcttacgaggtaagg 235  Q
    ||||||||||||||||| |  ||||||||||||| || |||||  ||||| |||||| | |||||| |||||||||||||| ||||||  ||||||||||    
T  8748 caaataattcctggagttagtgaaaacgtgtctgcacagtagcgctgtgactttgagttggtttagagtttggctaggaagaaaagctctcgaggtaagg 8847  T
Q  236 gcttttcccccatacgaccatactaagtactaggatgatattatgaattagtggtagagattcttgtctgttgagagga--aaaacaactaaaatataaa 333  Q
    |||||| |||||||||  | |||||||||||||||| || ||||||||||| |||| | ||||||||||||||| | ||  |||||||||||||||| ||    
T  8848 gctttttccccatacgttcttactaagtactaggattatgttatgaattagaggtataaattcttgtctgttgaaaagaacaaaacaactaaaatatgaa 8947  T
Q  334 tt 335  Q
    ||    
T  8948 tt 8949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 80; Significance: 2e-37; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 228 - 343
Target Start/End: Complemental strand, 28969431 - 28969316
Alignment:
Q  228 aggtaagggcttttcccccatacgaccatactaagtactaggatgatattatgaattagtggtagagattcttgtctgttgagaggaaaaacaactaaaa 327  Q
    ||||||||| |||| || |||||| |||||||||||||||||||||| ||||||||||| |||||| ||||||||||||||||| |||||||||||||||    
T  28969431 aggtaagggttttttcctcatacgtccatactaagtactaggatgatgttatgaattagaggtagaaattcttgtctgttgagaagaaaaacaactaaaa 28969332  T
Q  328 tataaatttatatggt 343  Q
    ||| ||||||||||||    
T  28969331 tattaatttatatggt 28969316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 57 - 193
Target Start/End: Complemental strand, 42900866 - 42900730
Alignment:
Q  57 ttcattcaccgtccgattgggctaatttttggacagcgtgttcaagacatgcggttcttcgttttcaacggtccgatcgtccaaataattcctggagtga 156  Q
    ||||||||||||  | |||||||| |||||||||| | |||||   | ||| ||||||| ||||||||| |||||||| ||||||||||| |||||||||    
T  42900866 ttcattcaccgtttgtttgggctagtttttggacaacatgttctcaatatgtggttctttgttttcaactgtccgatcatccaaataatttctggagtga 42900767  T
Q  157 cagaaaacgtgtctgtaccgtagctgtgagtttgagg 193  Q
     |||||| | ||||| |  || |||||||||||||||    
T  42900766 gagaaaatgagtctgcattgtggctgtgagtttgagg 42900730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 212 - 330
Target Start/End: Original strand, 69235 - 69352
Alignment:
Q  212 ggaaggaaagcttacgaggtaagggcttttcccccatacgaccatactaagtactaggatgatattatgaattagtggtagagattcttgtctgttgaga 311  Q
    ||||||||||||||||||||||||| ||||  |||||||| |||||||||||  |||||   | |||| || |||||||||  |||||||||| |||| |    
T  69235 ggaaggaaagcttacgaggtaaggg-ttttttcccatacgtccatactaagtgttaggactgtgttattaaatagtggtagcaattcttgtctcttgaaa 69333  T
Q  312 ggaaaaacaactaaaatat 330  Q
     ||||||||| ||||||||    
T  69334 agaaaaacaattaaaatat 69352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 261 - 340
Target Start/End: Original strand, 49499045 - 49499126
Alignment:
Q  261 agtactaggatgatattatgaattagtggtagagattcttgtctgttgagagg--aaaaacaactaaaatataaatttatat 340  Q
    ||||||||||| || ||||||||||| ||| |||||||||||||||||||| |  ||||| ||||||||||| |||||||||    
T  49499045 agtactaggatcatgttatgaattagaggtggagattcttgtctgttgagaagaaaaaaaaaactaaaatatgaatttatat 49499126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 210 - 343
Target Start/End: Original strand, 41868552 - 41868684
Alignment:
Q  210 taggaaggaaagcttacgaggtaagggcttttcccccatacgaccatactaagtactaggatgatattatgaattagtggtagagattcttgtctgttga 309  Q
    |||||| ||||||  || ||||||| |||||| ||| ||||| |||||||||||| ||||||||| || ||||||||  ||||| |||||||||| ||||    
T  41868552 taggaatgaaagcacacaaggtaagtgctttttccc-atacgtccatactaagtattaggatgatgttgtgaattagaagtagaaattcttgtctcttga 41868650  T
Q  310 gaggaaaaacaactaaaatataaatttatatggt 343  Q
     | || |||||| | ||||||| ||||| |||||    
T  41868651 aaagataaacaattcaaatatatatttacatggt 41868684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 203 - 268
Target Start/End: Original strand, 40458881 - 40458946
Alignment:
Q  203 gtttggctaggaaggaaagcttacgaggtaagggcttttcccccatacgaccatactaagtactag 268  Q
    ||||| |||||||| ||||||  |||||||||||||||| ||||||||| ||||||||||| ||||    
T  40458881 gtttgactaggaagaaaagctctcgaggtaagggctttttccccatacgtccatactaagtgctag 40458946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 51; Significance: 5e-20; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 131 - 249
Target Start/End: Original strand, 35839004 - 35839122
Alignment:
Q  131 gatcgtccaaataattcctggagtgacagaaaacgtgtctgtaccgtagctgtgagtttgaggtagtttagtgtttggctaggaaggaaagcttacgagg 230  Q
    ||||||| ||||||| ||| |||||| |||||||||||||| ||| ||| ||||| |||||||| |||||| ||||| |||||||| ||||||  ||||     
T  35839004 gatcgtcaaaataatccctagagtgagagaaaacgtgtctgcaccatagttgtgactttgaggtggtttagagtttgactaggaagaaaagctctcgagc 35839103  T
Q  231 taagggcttttcccccata 249  Q
    |||| |||||| |||||||    
T  35839104 taagagctttttccccata 35839122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 142
Target Start/End: Original strand, 24423001 - 24423142
Alignment:
Q  1 cattggaactattttcgtttttctcaaacc-tgtcatcgtagaattgtgactacaccttcattcaccgtccgattgggctaatttttggacagcgtgttc 99  Q
    ||||||| ||||||||||||| ||| |||| ||||| |||||||||| |||||||||||  |||||| | |||||| ||||||||||| ||||| ||||     
T  24423001 cattggagctattttcgtttt-ctctaaccatgtcaccgtagaattgggactacacctttgttcaccattcgattgcgctaatttttgaacagcatgttt 24423099  T
Q  100 aagacatgcggttcttcgttttcaacggtccgatcgtccaaat 142  Q
        |||  |||||||||||||||| |||||||||||| ||||    
T  24423100 ccaccatttggttcttcgttttcaaaggtccgatcgtcaaaat 24423142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 208 - 330
Target Start/End: Complemental strand, 22816609 - 22816487
Alignment:
Q  208 gctaggaaggaaagcttacgaggtaagggcttttcccccatacgaccatactaagtactaggatgatattatgaattagtggtagagattcttgtctgtt 307  Q
    ||||||||||||||||  |||||||||||||||| |||||||||  | | ||||||  |||||   | |||| || ||||||| |  |||||||||| ||    
T  22816609 gctaggaaggaaagctctcgaggtaagggctttttccccatacgttcttgctaagtgttaggactgtgttattaaatagtggttgcaattcttgtctctt 22816510  T
Q  308 gagaggaaaaacaactaaaatat 330  Q
    || | ||||||||| ||||||||    
T  22816509 gaaaagaaaaacaattaaaatat 22816487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1838 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold1838
Description:

Target: scaffold1838; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 276 - 343
Target Start/End: Original strand, 224 - 291
Alignment:
Q  276 ttatgaattagtggtagagattcttgtctgttgagaggaaaaacaactaaaatataaatttatatggt 343  Q
    ||||||||||| | ||||||||||||| |||| | | |||||| || |||||||||||| ||||||||    
T  224 ttatgaattagagatagagattcttgtttgttaaaaagaaaaataattaaaatataaatctatatggt 291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University