View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19074_high_1 (Length: 379)
Name: NF19074_high_1
Description: NF19074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19074_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 1 - 364
Target Start/End: Original strand, 49133916 - 49134289
Alignment:
| Q |
1 |
catattttctatatagattatgacgtgtatctctcaattcgtcaattttgaaactttgtgtataattccatggatcaggatcagaacttgctgcttgagt |
100 |
Q |
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| T |
49133916 |
catattttctatatagattatgacgtgtatctctcaattcgtcaattttgaaactttgtgtataattccatggatcaggatcagaacttgctgcttgagt |
49134015 |
T |
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| Q |
101 |
tggtaccaatattagctgttgccggcattctggtgagtctaatttgaaaatgtgattaaggaatttgagttaatgaaatgttagttaatcacatacattc |
200 |
Q |
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| T |
49134016 |
tggtaccaatattagctgttgccggcattctggtgagtctaatttgaaaatgtgattaaggaatttgagttaatgaaatgttagttaatcacatacattc |
49134115 |
T |
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| Q |
201 |
tttaagcatatttgacctgaaattgta----------tcagatatatgtagcagcattttcaattggaatgggaccggttccttgggtaataatgtctga |
290 |
Q |
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| T |
49134116 |
tttaagcatatttgacctgaaattgtatcaaattgtgtcagatatatgtagcagcattttcaattggaatgggaccggttccttgggtaataatgtctga |
49134215 |
T |
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| Q |
291 |
ggtatgtgtcatttggttttgtggcttttgtagtgcaactcttatgaacaattgtgctcatggaaggtattgag |
364 |
Q |
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| T |
49134216 |
ggtatgtgtcatttggttttgtggcttttgtagtgcaactcttatgaacaattgtgctcatggaaggtattgag |
49134289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 239 - 297
Target Start/End: Original strand, 6928025 - 6928083
Alignment:
| Q |
239 |
tagcagcattttcaattggaatgggaccggttccttgggtaataatgtctgaggtatgt |
297 |
Q |
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| T |
6928025 |
tagcagcattttcaattgggttgggatcagttccttgggtgatgatgtctgaggtatgt |
6928083 |
T |
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