View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19074_high_7 (Length: 326)

Name: NF19074_high_7
Description: NF19074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19074_high_7
NF19074_high_7
[»] chr5 (17 HSPs)
chr5 (22-298)||(30678398-30678667)
chr5 (101-298)||(30243609-30243806)
chr5 (11-295)||(30058960-30059244)
chr5 (91-298)||(30339752-30339959)
chr5 (33-273)||(4380358-4380598)
chr5 (101-298)||(29870855-29871052)
chr5 (91-298)||(30748312-30748519)
chr5 (101-298)||(30434491-30434688)
chr5 (101-295)||(29851971-29852165)
chr5 (120-298)||(30398683-30398861)
chr5 (140-298)||(30482001-30482159)
chr5 (164-298)||(17419191-17419325)
chr5 (101-209)||(30482162-30482270)
chr5 (171-297)||(29710277-29710403)
chr5 (21-216)||(30205192-30205387)
chr5 (21-100)||(30398863-30398942)
chr5 (17-62)||(30474211-30474256)
[»] chr7 (1 HSPs)
chr7 (19-298)||(26705932-26706211)
[»] chr4 (4 HSPs)
chr4 (39-209)||(20297850-20298020)
chr4 (110-297)||(20303875-20304061)
chr4 (149-298)||(20298032-20298181)
chr4 (180-232)||(20301381-20301433)


Alignment Details
Target: chr5 (Bit Score: 173; Significance: 5e-93; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 22 - 298
Target Start/End: Original strand, 30678398 - 30678667
Alignment:
Q  22 tttcccaaaattgaagcagttaccaaatgaaccctttaacccagctttgacggatctgtatatctgttattgtaatgagttggagtccttaccagagaaa 121  Q
    |||||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||| ||||  ||||||||||||||||||||||||||||||| ||    
T  30678398 tttcccaaaactgaaggagttaccaaatgaaccctttaacccagctttgacgcatctgtgtatcacttattgtaatgagttggagtccttaccagagcaa 30678497  T
Q  122 aattgggaaggtcttcaatcccttcgaactctaaagattcgtaattgtgaaggattgcgatgcttcccggagggtattcgacacctcatttctcttgagg 221  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||  ||||          
T  30678498 aattgggaaggtcttcaatcccttcgaactctaaagattcgtaattgtgaaggattgcgatgcttgccggagggtattcgacacctcacatctc------ 30678591  T
Q  222 ttttgaatatttataaatgcccaacattagag-gaaagatgcaaagagggaactggggaggattgggacaagatagct 298  Q
      ||||||||||||||||| |||||||| | | ||| | |||||||||||||  ||||||||||||||||||||||||    
T  30678592 --ttgaatatttataaatgtccaacatttgtgagaagggtgcaaagagggaatgggggaggattgggacaagatagct 30678667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 101 - 298
Target Start/End: Original strand, 30243609 - 30243806
Alignment:
Q  101 ttggagtccttaccagagaaaaattgggaaggtcttcaatcccttcgaactctaaagattcgtaattgtgaaggattgcgatgcttcccggagggtattc 200  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||  ||||||||||| ||  |||||||||||||||||||| |||||||||||||    
T  30243609 ttggagtccttaccagagacaaattgggaaggtcttcaatcccttcgatttctaaagattcatagatgtgaaggattgcgatgcttgccggagggtattc 30243708  T
Q  201 gacacctcatttctcttgaggttttgaatatttataaatgcccaacattagaggaaagatgcaaagagggaactggggaggattgggacaagatagct 298  Q
    ||||||||| |||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||    
T  30243709 gacacctcacttctcttgaggttttgaatatttataaatgtccaacattagaggaacgatgcaaagagggaacaggggaggattgggacaagatagct 30243806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 11 - 295
Target Start/End: Complemental strand, 30059244 - 30058960
Alignment:
Q  11 agaatatctaatttcccaaaattgaagcagttaccaaatgaaccctttaacccagctttgacggatctgtatatctgttattgtaatgagttggagtcct 110  Q
    ||||||| ||||||||||||| ||||| |||||||||||||| ||||||||||||||||||||  ||||| |||||||||||||||||||||||||||||    
T  30059244 agaatatataatttcccaaaactgaaggagttaccaaatgaaacctttaacccagctttgacgcttctgtgtatctgttattgtaatgagttggagtcct 30059145  T
Q  111 taccagagaaaaattgggaaggtcttcaatcccttcgaactctaaagattcgtaattgtgaaggattgcgatgcttcccggagggtattcgacacctcat 210  Q
    |||||||| ||||||||||||||||||||||||||||||||||| | |||  ||  ||||||||||||||||| || ||||||||||||||||||||||     
T  30059144 taccagagcaaaattgggaaggtcttcaatcccttcgaactctacatatttatagctgtgaaggattgcgatgtttgccggagggtattcgacacctcac 30059045  T
Q  211 ttctcttgaggttttgaatatttataaatgcccaacattagaggaaagatgcaaagagggaactggggaggattgggacaagata 295  Q
    |||||||||| || ||| |||   |   |||| ||||||| ||||| |||||||  || |||| |||||||||||||||||||||    
T  30059044 ttctcttgagcttctgactatcattggttgccgaacattaaaggaacgatgcaagaagcgaacaggggaggattgggacaagata 30058960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 91 - 298
Target Start/End: Original strand, 30339752 - 30339959
Alignment:
Q  91 ttgtaatgagttggagtccttaccagagaaaaattgggaaggtcttcaatcccttcgaactctaaagattcgtaattgtgaaggattgcgatgcttcccg 190  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||  ||  |||||||||||||||||||| |||    
T  30339752 ttgtaatgagttggagtccttaccagagcaaaattgggaaggtcttcaatcccttcgaactctacagatttatagctgtgaaggattgcgatgcttgccg 30339851  T
Q  191 gagggtattcgacacctcatttctcttgaggttttgaatatttataaatgcccaacattagaggaaagatgcaaagagggaactggggaggattgggaca 290  Q
    ||||||||||||||||||| |||||||||| || ||| |||   ||| |||||||||||||||||| |||||||||||||||| ||||||||||||||||    
T  30339852 gagggtattcgacacctcacttctcttgagcttctgactatcattaattgcccaacattagaggaacgatgcaaagagggaacaggggaggattgggaca 30339951  T
Q  291 agatagct 298  Q
    ||||||||    
T  30339952 agatagct 30339959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 33 - 273
Target Start/End: Complemental strand, 4380598 - 4380358
Alignment:
Q  33 tgaagcagttaccaaatgaaccctttaacccagctttgacggatctgtatatctgttattgtaatgagttggagtccttaccagagaaaaattgggaagg 132  Q
    ||||| |||||||||||||||||||||| ||| |||||||| || ||||||||| | ||||||||||| | ||||||||||||||| ||||||| |||||    
T  4380598 tgaaggagttaccaaatgaaccctttaaaccaactttgacgcatttgtatatctatgattgtaatgagcttgagtccttaccagagcaaaattgagaagg 4380499  T
Q  133 tcttcaatcccttcgaactctaaagattcgtaattgtgaaggattgcgatgcttcccggagggtattcgacacctcatttctcttgaggttttgaatatt 232  Q
    ||||||||||||| | ||||||| |||| |  ||||  |||||||||||||||| |||||||||||||||||||||| ||||||||||||| |||  ||     
T  4380498 tcttcaatcccttaggactctaacgatttgggattgcaaaggattgcgatgcttgccggagggtattcgacacctcacttctcttgaggttctgagaatc 4380399  T
Q  233 tataaatgcccaacattagaggaaagatgcaaagagggaac 273  Q
      |   |||||||||||||||||| ||||||||||||||||    
T  4380398 attggttgcccaacattagaggaacgatgcaaagagggaac 4380358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 101 - 298
Target Start/End: Complemental strand, 29871052 - 29870855
Alignment:
Q  101 ttggagtccttaccagagaaaaattgggaaggtcttcaatcccttcgaactctaaagattcgtaattgtgaaggattgcgatgcttcccggagggtattc 200  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||| | ||| |||| | ||||||||||||||||||||||| |||||||||||||    
T  29871052 ttggagtccttaccagagcaaaattgggaaggtcttcaatcccttcgaattttaaggatttggaattgtgaaggattgcgatgcttgccggagggtattc 29870953  T
Q  201 gacacctcatttctcttgaggttttgaatatttataaatgcccaacattagaggaaagatgcaaagagggaactggggaggattgggacaagatagct 298  Q
    ||||||||| ||| |||||| || ||   ||| |    |||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||    
T  29870952 gacacctcacttcacttgagcttctggcaattgagggttgcccaacattagaggaacgatgcaaagagggaacaggggaggattgggacaagatagct 29870855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 91 - 298
Target Start/End: Complemental strand, 30748519 - 30748312
Alignment:
Q  91 ttgtaatgagttggagtccttaccagagaaaaattgggaaggtcttcaatcccttcgaactctaaagattcgtaattgtgaaggattgcgatgcttcccg 190  Q
    |||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| ||||| ||||| |   ||||  ||||||||||||||| |||    
T  30748519 ttgtaatgagttggagtccttaccagagcaaaactgggaaggtcttcaatcccttcgagctctacagatttggggttgtagaggattgcgatgcttgccg 30748420  T
Q  191 gagggtattcgacacctcatttctcttgaggttttgaatatttataaatgcccaacattagaggaaagatgcaaagagggaactggggaggattgggaca 290  Q
    ||||||||||||||||||| |||||||||| || |  ||||   | | |||||||||||||||||| ||||||||||||||||  |||||||||||||||    
T  30748419 gagggtattcgacacctcacttctcttgagcttcttgatatcattgattgcccaacattagaggaacgatgcaaagagggaacatgggaggattgggaca 30748320  T
Q  291 agatagct 298  Q
    ||||||||    
T  30748319 agatagct 30748312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 101 - 298
Target Start/End: Complemental strand, 30434688 - 30434491
Alignment:
Q  101 ttggagtccttaccagagaaaaattgggaaggtcttcaatcccttcgaactctaaagattcgtaattgtgaaggattgcgatgcttcccggagggtattc 200  Q
    |||||||||||||||||| |||| |||||||||||||||||||||||| |||||  |||| |   ||||  ||||||||||||||| |||||||||||||    
T  30434688 ttggagtccttaccagagcaaaactgggaaggtcttcaatcccttcgagctctactgatttggggttgtagaggattgcgatgcttgccggagggtattc 30434589  T
Q  201 gacacctcatttctcttgaggttttgaatatttataaatgcccaacattagaggaaagatgcaaagagggaactggggaggattgggacaagatagct 298  Q
    ||||||||| |||||||||| || ||  |||   | | |||||||||||| ||||| |||||||||||||||| ||||||||||||||||||||||||    
T  30434588 gacacctcacttctcttgagcttctgtctatcattgattgcccaacattaaaggaacgatgcaaagagggaacaggggaggattgggacaagatagct 30434491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 101 - 295
Target Start/End: Complemental strand, 29852165 - 29851971
Alignment:
Q  101 ttggagtccttaccagagaaaaattgggaaggtcttcaatcccttcgaactctaaagattcgtaattgtgaaggattgcgatgcttcccggagggtattc 200  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||  ||||    ||||| |||||||| ||||||| ||||||||||||     
T  29852165 ttggagtccttaccagagcaaaattgggaaggtcttcaatcccttcgaactctacggattatatattgtaaaggattgagatgcttgccggagggtattg 29852066  T
Q  201 gacacctcatttctcttgaggttttgaatatttataaatgcccaacattagaggaaagatgcaaagagggaactggggaggattgggacaagata 295  Q
    ||||||||| |||||||||| || ||   ||| | || |||||||||||||||||| ||||||||| ||||||  | ||||||||||||||||||    
T  29852065 gacacctcacttctcttgagcttctgtcaattaaaaattgcccaacattagaggaacgatgcaaagtgggaacatgtgaggattgggacaagata 29851971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 120 - 298
Target Start/End: Complemental strand, 30398861 - 30398683
Alignment:
Q  120 aaaattgggaaggtcttcaatcccttcgaactctaaagattcgtaattgtgaaggattgcgatgcttcccggagggtattcgacacctcatttctcttga 219  Q
    |||||||||||||||| |||||||||| |  |||| | |||  ||||||| ||| |||||||||||| |||||||||||| ||||||||| |||||||||    
T  30398861 aaaattgggaaggtctgcaatcccttcaatatctatatatttctaattgtaaagaattgcgatgctttccggagggtattagacacctcacttctcttga 30398762  T
Q  220 ggttttgaatatttataaatgcccaacattagaggaaagatgcaaagagggaactggggaggattgggacaagatagct 298  Q
    |||| |||  ||  || | |||||||||||| ||||| |||||||||||||||| ||||||||||||||||||||||||    
T  30398761 ggttctgacaatcaatgattgcccaacattaaaggaacgatgcaaagagggaacaggggaggattgggacaagatagct 30398683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 140 - 298
Target Start/End: Complemental strand, 30482159 - 30482001
Alignment:
Q  140 tcccttcgaactctaaagattcgtaattgtgaaggattgcgatgcttcccggagggtattcgacacctcatttctcttgaggttttgaatatttataaat 239  Q
    |||||||||| |||| |||||  ||  ||| |||||||||||||||| |||||||||||||||||||||| ||||||||||||| |||  ||||   |||    
T  30482159 tcccttcgaaatctacagatttatagctgtaaaggattgcgatgcttgccggagggtattcgacacctcacttctcttgaggttctgacaatttgggaat 30482060  T
Q  240 gcccaacattagaggaaagatgcaaagagggaactggggaggattgggacaagatagct 298  Q
    ||||||||||||||||| ||||||||||||||||  |||||||||||||||||||||||    
T  30482059 gcccaacattagaggaacgatgcaaagagggaacatgggaggattgggacaagatagct 30482001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 164 - 298
Target Start/End: Original strand, 17419191 - 17419325
Alignment:
Q  164 aattgtgaaggattgcgatgcttcccggagggtattcgacacctcatttctcttgaggttttgaatatttataaatgcccaacattagaggaaagatgca 263  Q
    ||||||||||| ||| ||||||| |  ||||||||||||||||||| |||||  ||| || |||| |||||| | | |||||||||||||||| ||||||    
T  17419191 aattgtgaaggtttgagatgcttgctagagggtattcgacacctcacttctcccgagtttctgaacatttatgactccccaacattagaggaacgatgca 17419290  T
Q  264 aagagggaactggggaggattgggacaagatagct 298  Q
    | |||||||| ||||||||||||||||||||||||    
T  17419291 aggagggaaccggggaggattgggacaagatagct 17419325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 101 - 209
Target Start/End: Complemental strand, 30482270 - 30482162
Alignment:
Q  101 ttggagtccttaccagagaaaaattgggaaggtcttcaatcccttcgaactctaaagattcgtaattgtgaaggattgcgatgcttcccggagggtattc 200  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||| ||||| | |||   | ||||  ||||||| ||||||| |||||||||||||    
T  30482270 ttggagtccttaccagagcaaaattgggaaggtcttcaatcccttcgagctctacacatttcgagttgtagaggattgagatgcttgccggagggtattc 30482171  T
Q  201 gacacctca 209  Q
    |||||||||    
T  30482170 gacacctca 30482162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 171 - 297
Target Start/End: Original strand, 29710277 - 29710403
Alignment:
Q  171 aaggattgcgatgcttcccggagggtattcgacacctcatttctcttgaggttttgaatatttataaatgcccaacattagaggaaagatgcaaagaggg 270  Q
    |||||||||||||||| ||||||||||||   | ||||| ||||||||||||| || || ||||||| | | |||||||||||||| ||||||| |||||    
T  29710277 aaggattgcgatgctttccggagggtattgctcgcctcacttctcttgaggttctgtatttttataatttctcaacattagaggaacgatgcaaggaggg 29710376  T
Q  271 aactggggaggattgggacaagatagc 297  Q
    | |  ||||||||| ||||||||||||    
T  29710377 agcaagggaggattaggacaagatagc 29710403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 21 - 216
Target Start/End: Complemental strand, 30205387 - 30205192
Alignment:
Q  21 atttcccaaaattgaagcagttaccaaatgaaccctttaacccagctttgacggatctgtatatctgttattgtaatgagttggagtccttaccagagaa 120  Q
    |||| |||||| ||||| |||||||||||||||| |||| || || | ||  | |||||   |||| ||  ||| ||||| | ||||| |||||| || |    
T  30205387 attttccaaaagtgaaggagttaccaaatgaaccatttagcctagttatggagcatctgataatctcttcatgtgatgagcttgagtctttaccaaagga 30205288  T
Q  121 aaattgggaaggtcttcaatcccttcgaactctaaagattcgtaattgtgaaggattgcgatgcttcccggagggtattcgacacctcatttctct 216  Q
    || |||||||||||| |||||||| ||||||||| | ||| ||  |||| ||| | || ||||||| ||||| ||||||||||| |||| ||||||    
T  30205287 aatttgggaaggtctgcaatccctccgaactctagatatttgtcgttgtaaagaactgagatgcttaccggaaggtattcgacatctcacttctct 30205192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 21 - 100
Target Start/End: Complemental strand, 30398942 - 30398863
Alignment:
Q  21 atttcccaaaattgaagcagttaccaaatgaaccctttaacccagctttgacggatctgtatatctgttattgtaatgag 100  Q
    ||||||||| | ||||| |||||| ||||||||||||||||| |||||||||| |||||  ||||| | |||||||||||    
T  30398942 atttcccaacactgaaggagttacaaaatgaaccctttaaccaagctttgacgcatctgcgtatctctgattgtaatgag 30398863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 62
Target Start/End: Complemental strand, 30474256 - 30474211
Alignment:
Q  17 tctaatttcccaaaattgaagcagttaccaaatgaaccctttaacc 62  Q
    ||||||||||||||||||||| |  |||||||||||||||| ||||    
T  30474256 tctaatttcccaaaattgaagaaactaccaaatgaacccttcaacc 30474211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 152; Significance: 2e-80; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 19 - 298
Target Start/End: Complemental strand, 26706211 - 26705932
Alignment:
Q  19 taatttcccaaaattgaagcagttaccaaatgaaccctttaacccagctttgacggatctgtatatctgttattgtaatgagttggagtccttaccagag 118  Q
    ||||||||||||  ||||| ||||||||||||||||||||||||||||||||||| |||||||||||| | ||||||||||| | |||||| ||||||||    
T  26706211 taatttcccaaatctgaaggagttaccaaatgaaccctttaacccagctttgacgcatctgtatatctataattgtaatgagattgagtccctaccagag 26706112  T
Q  119 aaaaattgggaaggtcttcaatcccttcgaactctaaagattcgtaattgtgaaggattgcgatgcttcccggagggtattcgacacctcatttctcttg 218  Q
    ||||  ||||||||||||||||||||| | |||||| ||||| |  ||||| ||||| |||||||||| || ||||||||||||||||||| ||||||||    
T  26706111 aaaatgtgggaaggtcttcaatcccttaggactctagagatttgggattgtaaaggaatgcgatgcttgccagagggtattcgacacctcacttctcttg 26706012  T
Q  219 aggttttgaatatttataaatgcccaacattagaggaaagatgcaaagagggaactggggaggattgggacaagatagct 298  Q
    || || |||  ||||  |  |||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||    
T  26706011 agtttctgagaatttggagttgcccaacattagaggaacgatgcaaagagggaacaggggaggattgggacaagatagct 26705932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 91; Significance: 4e-44; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 39 - 209
Target Start/End: Original strand, 20297850 - 20298020
Alignment:
Q  39 agttaccaaatgaaccctttaacccagctttgacggatctgtatatctgttattgtaatgagttggagtccttaccagagaaaaattgggaaggtcttca 138  Q
    |||||||||||||||||||||||||||||||||   ||||| |||||| |  ||||  |||||||||||||||||||||| ||| |||||||||||||||    
T  20297850 agttaccaaatgaaccctttaacccagctttgaaacatctggatatctctcgttgtcgtgagttggagtccttaccagagcaaatttgggaaggtcttca 20297949  T
Q  139 atcccttcgaactctaaagattcgtaattgtgaaggattgcgatgcttcccggagggtattcgacacctca 209  Q
    ||||||||||||||||   ||| || ||||| ||||||||| |||||| ||||||||||||| ||||||||    
T  20297950 atcccttcgaactctaggaattagttattgtaaaggattgcaatgcttgccggagggtattcaacacctca 20298020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 110 - 297
Target Start/End: Original strand, 20303875 - 20304061
Alignment:
Q  110 ttaccagagaaaaattgggaaggtcttcaatcccttcgaactctaaagattcgtaattgtgaaggattgcgatgcttcccggagggtattcgacacctca 209  Q
    ||||||||||||| ||||||||||||  |||||||| ||||| | | |||||||| |||| |||||||| ||||||| || || |||||||||  |||||    
T  20303875 ttaccagagaaaatttgggaaggtctgaaatcccttagaactatgatgattcgtagttgtaaaggattgagatgcttgcctgaaggtattcgattcctca 20303974  T
Q  210 tttctcttgaggttttgaatatttataaatgcccaacattagaggaaagatgcaaagagggaactggggaggattgggacaagatagc 297  Q
     ||| ||||||||||||| ||||||| |||||||||||||| ||||| | |||||   |||||| || ||||||| ||||||||||||    
T  20303975 cttcacttgaggttttgagtatttatgaatgcccaacattaaaggaacggtgcaagacgggaacaggcgaggatt-ggacaagatagc 20304061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 149 - 298
Target Start/End: Original strand, 20298032 - 20298181
Alignment:
Q  149 actctaaagattcgtaattgtgaaggattgcgatgcttcccggagggtattcgacacctcatttctcttgaggttttgaatatttataaatgcccaacat 248  Q
    |||||||||||| |   |||||||||||||| |||||| || || || |||| |||||||| |||||||||| || ||| |||   | | ||||| ||||    
T  20298032 actctaaagatttggggttgtgaaggattgcaatgcttgccagaaggcattcaacacctcacttctcttgagcttctgactatcggttattgccccacat 20298131  T
Q  249 tagaggaaagatgcaaagagggaactggggaggattgggacaagatagct 298  Q
    || ||  | |||||||||||||||| ||||||||||||||||||||||||    
T  20298132 taaagttacgatgcaaagagggaacaggggaggattgggacaagatagct 20298181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 180 - 232
Target Start/End: Original strand, 20301381 - 20301433
Alignment:
Q  180 gatgcttcccggagggtattcgacacctcatttctcttgaggttttgaatatt 232  Q
    |||||||  ||||||||||| |||||||||||||||| |||||| ||||||||    
T  20301381 gatgcttgtcggagggtatttgacacctcatttctctcgaggttctgaatatt 20301433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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