View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19074_high_9 (Length: 317)
Name: NF19074_high_9
Description: NF19074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19074_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 32 - 296
Target Start/End: Complemental strand, 15525275 - 15525005
Alignment:
| Q |
32 |
gaggtatcctcgcattactaatttgtttcattattgtgtgccagatatcagttatga------atgttccattgtatgtttatcctattctagattcaat |
125 |
Q |
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| T |
15525275 |
gaggtatcctcgcattaataatttgtttcattattgtgtgccagatatcagttatgattatgaatgttccattgtatgtttatcctattttagattcaat |
15525176 |
T |
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| Q |
126 |
gctttaagtacaatggttaaactattcttgaataattgaacaaacgcttgttgcatctcgcagcatgttattgttgatttgaatctgcggatacaacacc |
225 |
Q |
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| T |
15525175 |
gctttaagtacaatggttaaactgttcttgaataattgaacaaacgcttgttgcatctcgcagcatgttattgttgatttgaatctgcggatacaacacc |
15525076 |
T |
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| Q |
226 |
taagtcaagcactacagcaggtacttgatctagaatcggaggatatacctcttacgagggatgtgatgatg |
296 |
Q |
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| T |
15525075 |
taagtcaagcactacagcaggtacttgatctagaaacggaggatatacctcttacgagggatgtgatgatg |
15525005 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 81 - 235
Target Start/End: Complemental strand, 15544778 - 15544628
Alignment:
| Q |
81 |
agttatgaatgttccattgtatgtttatcctattctagattcaatgctttaagtacaatggttaaactattcttgaataattgaacaaacgcttgttgca |
180 |
Q |
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| T |
15544778 |
agttttgaatgttccattttatgtttatgctattatagtttcaatgctttat----aatagttaaattgttcataaataattgaacaaaagcttgttgca |
15544683 |
T |
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| Q |
181 |
tctcgcagcatgttattgttgatttgaatctgcggatacaacacctaagtcaagc |
235 |
Q |
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| T |
15544682 |
tcttgcagcatgttattgatgatttgagccagcggacacgacgcctaagtcaagc |
15544628 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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