View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19076_high_3 (Length: 368)
Name: NF19076_high_3
Description: NF19076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19076_high_3 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 18 - 360
Target Start/End: Original strand, 38268634 - 38268975
Alignment:
| Q |
18 |
ttaccaatgttatagtggctactaaatgaagccttcacatggctcagtcatgttcaactatatgaagaaaaaattgaattgcttctagcttcattcttaa |
117 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38268634 |
ttaccaatgt-atagtggctactaaatgaagccttcacatggctcagtcatgttcaactatatgaagaaaaaattgaattgcttctagcttcattcttaa |
38268732 |
T |
|
| Q |
118 |
cgtcggtcgcatttttcacaactgaatattaatcatcatttactacaagtaattaaccaagtnnnnnnntaattcttcttgaattcaccgtattgttata |
217 |
Q |
| |
|
|| || ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
38268733 |
tgttggccgcatttttcacaactgaatattaatcgtcatttactacaagtaattaaccaagtaaaaaaataattcttcttgaattcaccgtattgttata |
38268832 |
T |
|
| Q |
218 |
accattacaccaaagagtttcaactgaataaacaaatttcaagagtttggtcgttcttcagaaaatctaggaagttgtaccagggagtttactcgggtga |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
38268833 |
accattacaccaaagagtttcaactgaataaacaaatttcaagagtttggtcgttcttcagaaaatctaggaagttgtaccagtgagtttactcgggtga |
38268932 |
T |
|
| Q |
318 |
caccttctagacctaaccagttttgatcttcagctgatgatgt |
360 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
38268933 |
caccttctagacctaaccagttttgatcttcagctaatgatgt |
38268975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 255 - 356
Target Start/End: Complemental strand, 14963349 - 14963248
Alignment:
| Q |
255 |
ttcaagagtttggtcgttcttcagaaaatctaggaagttgtaccagggagtttactcgggtgacaccttctagacctaaccagttttgatcttcagctga |
354 |
Q |
| |
|
|||||||||||| || |||||||||||||||||||||||| || || |||||||| || ||||| ||||| | |||||||||||||||||||||| |||| |
|
|
| T |
14963349 |
ttcaagagtttgatctttcttcagaaaatctaggaagttggacgagtgagtttacacgagtgaccccttccaaacctaaccagttttgatcttcacctga |
14963250 |
T |
|
| Q |
355 |
tg |
356 |
Q |
| |
|
|| |
|
|
| T |
14963249 |
tg |
14963248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University