View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19076_high_4 (Length: 359)
Name: NF19076_high_4
Description: NF19076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19076_high_4 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 12 - 343
Target Start/End: Original strand, 1879846 - 1880177
Alignment:
| Q |
12 |
ttgcgatggggacaaaatgtcatcatctttctaatcaacaacggtggttacacaactgaggcagaaattcatgatgggccttacaatgtgataaaaaatt |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1879846 |
ttgcgatggggacaaaatgtcatcatctttctaatcaacaatggtggttacacaactgaggcagaaattcatgatgggccttacaatgtgataaaaaatt |
1879945 |
T |
|
| Q |
112 |
ggaactatgctggactaattgaaacaatagacaatggtgaaggcaagtgttttactgccaaggtgagacattcttaaaaaacacttgtaaacatcaatta |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
1879946 |
ggaactatgctggactaattgaaacaatagacaatggtgaaggaaagtgttttactgccaaggtgagacaatcttaaaaaacacttgtaaacatcaatta |
1880045 |
T |
|
| Q |
212 |
agaatatcaaattcataagcttttaacattaatgctctacttgaaggtgcattgtgaggaagagctaatagaagcaataaatacaacaatggagagtaaa |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1880046 |
agaatatcaaattcataagcttttaacattaatgctctacttgaaggtgcattgtgaggaagagctaatagaagcaataaatacaacaatggagagtaaa |
1880145 |
T |
|
| Q |
312 |
aagaattgtctatgtttcattgaagtggttat |
343 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
1880146 |
aagaattgtctatgtttcattgaagtggttat |
1880177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 32 - 178
Target Start/End: Original strand, 25606052 - 25606198
Alignment:
| Q |
32 |
catcatctttctaatcaacaacggtggttacacaactgaggcagaaattcatgatgggccttacaatgtgataaaaaattggaactatgctggactaatt |
131 |
Q |
| |
|
||||||||| || || ||||| || || ||||||| ||||| |||||||||||||| || |||||||| || || || ||||| || ||||| | ||| |
|
|
| T |
25606052 |
catcatcttcctgataaacaatggaggatacacaattgaggttgaaattcatgatggaccatacaatgttatcaagaactggaattacactggattgatt |
25606151 |
T |
|
| Q |
132 |
gaaacaatagacaatggtgaaggcaagtgttttactgccaaggtgag |
178 |
Q |
| |
|
|| |||| ||||||||||||| || |||| ||| |||||||||| |
|
|
| T |
25606152 |
gatgcaattcacaatggtgaaggaaaatgttggactaccaaggtgag |
25606198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 32 - 178
Target Start/End: Original strand, 25625693 - 25625839
Alignment:
| Q |
32 |
catcatctttctaatcaacaacggtggttacacaactgaggcagaaattcatgatgggccttacaatgtgataaaaaattggaactatgctggactaatt |
131 |
Q |
| |
|
||||||||| || || ||||| || || ||||||| ||||| |||||||||||||| || |||||||| || || || ||||| || ||||| | ||| |
|
|
| T |
25625693 |
catcatcttcctgataaacaatggaggatacacaattgaggttgaaattcatgatggaccatacaatgttatcaagaactggaattacactggattgatt |
25625792 |
T |
|
| Q |
132 |
gaaacaatagacaatggtgaaggcaagtgttttactgccaaggtgag |
178 |
Q |
| |
|
|| |||| ||||||||||||| || |||| ||| |||||||||| |
|
|
| T |
25625793 |
gatgcaattcacaatggtgaaggaaaatgttggactaccaaggtgag |
25625839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University