View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19076_high_6 (Length: 346)
Name: NF19076_high_6
Description: NF19076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19076_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 330
Target Start/End: Original strand, 53869855 - 53870184
Alignment:
| Q |
1 |
atggtgggtcttttcttcacttgctcttactcaagtatctcttgaagatgtcaatattcattttgaaattctttgtagcatttctaatttcagttgcata |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
53869855 |
atggtgggtcttttcttcacttgctcttactcaagtatctcttgaagatgtcaatattcattttgaaattctttgtagcatttctaatttcagttgcata |
53869954 |
T |
|
| Q |
101 |
cccatcatcttttagacaaccactcattgtttctcctacatcccaactcctctgcaagtgttttttaccaaatacaattccatgttttctagttttagct |
200 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
53869955 |
cccatcatcttctagacaaccactcattgtttctcttacatcccaactcctcagcaagtgttttttaccaaatacaattccatgttttctagttttagct |
53870054 |
T |
|
| Q |
201 |
ataacttatatgggtcttctaagatgnnnnnnnnnnnnnattatgtcatggactaagatggaaatttgtttaaagaaaaaatttgttacccaatttctac |
300 |
Q |
| |
|
|||||| |||||||||||||||||| |||||||||| |||||||||| |||||||||||||||||||||||| ||||||||||||| |
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| T |
53870055 |
gtaacttctatgggtcttctaagatgttttttaatttttattatgtcatagactaagatgaaaatttgtttaaagaaaaaatttgcaacccaatttctac |
53870154 |
T |
|
| Q |
301 |
ttcaaccgtaaatttcgtatgaactcagtt |
330 |
Q |
| |
|
||||||| |||||||| ||||||||||||| |
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|
| T |
53870155 |
ttcaaccataaatttcatatgaactcagtt |
53870184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 330
Target Start/End: Original strand, 5277630 - 5277959
Alignment:
| Q |
1 |
atggtgggtcttttcttcacttgctcttactcaagtatctcttgaagatgtcaatattcattttgaaattctttgtagcatttctaatttcagttgcata |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5277630 |
atggtgggtcttttcttcacttgctcttactcaagtatctcttgaagatgtcaatatttattttgaaattctttgtagcatttctaatttcagttgcata |
5277729 |
T |
|
| Q |
101 |
cccatcatcttttagacaaccactcattgtttctcctacatcccaactcctctgcaagtgttttttaccaaatacaattccatgttttctagttttagct |
200 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||| |||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5277730 |
cccatcatcttctagacaaccactcattgtttctcttacatcccaattcctcagcaagtgttttttaccaaatacaattccatgttttctagttttagct |
5277829 |
T |
|
| Q |
201 |
ataacttatatgggtcttctaagatgnnnnnnnnnnnnnattatgtcatggactaagatggaaatttgtttaaagaaaaaatttgttacccaatttctac |
300 |
Q |
| |
|
|||||| |||||||||||||||||| |||||||||| |||||||||| |||||||||||||||||||||||| ||||||||||||| |
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|
| T |
5277830 |
gtaacttttatgggtcttctaagatgttttttaatttttattatgtcatagactaagatgaaaatttgtttaaagaaaaaatttgcaacccaatttctac |
5277929 |
T |
|
| Q |
301 |
ttcaaccgtaaatttcgtatgaactcagtt |
330 |
Q |
| |
|
||||||| |||||||| ||||||||||||| |
|
|
| T |
5277930 |
ttcaaccataaatttcttatgaactcagtt |
5277959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 1 - 330
Target Start/End: Original strand, 40727173 - 40727494
Alignment:
| Q |
1 |
atggtgggtcttttcttcacttgctcttactcaagtatctcttgaagatgtcaatattcattttgaaattctttgtagcatttctaatttcagttgcata |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40727173 |
atggtgggtcttttcttcacttgctcttactcaagtatctcttgaagatgtcaatatttattttgaaattctttgtagcatttctaatttcagttgcata |
40727272 |
T |
|
| Q |
101 |
cccatcatcttttagacaaccactcattgtttctcctacatcccaactcctctgcaagtgttttttaccaaatacaattccatgttttctagttttagct |
200 |
Q |
| |
|
||||||||||| ||||||||| ||||||||||||| |||||||||||||||| |||||||||||||||||||||||||| ||| |||||||||||||||| |
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|
| T |
40727273 |
cccatcatcttctagacaacccctcattgtttctcttacatcccaactcctcagcaagtgttttttaccaaatacaatttcatattttctagttttagct |
40727372 |
T |
|
| Q |
201 |
ataacttatatgggtcttctaagatgnnnnnnnnnnnnnattatgtcatggactaagatggaaatttgtttaaagaaaaaatttgttacccaatttctac |
300 |
Q |
| |
|
|||||| |||||||||||||||||| |||||||| ||||| ||||||||| |||||||||||||| ||||||||||||| |
|
|
| T |
40727373 |
gtaacttgtatgggtcttctaagatgttttttaatttttattatgtc--------agatgaaaatttgttcaaagaaaaaatttgcaacccaatttctac |
40727464 |
T |
|
| Q |
301 |
ttcaaccgtaaatttcgtatgaactcagtt |
330 |
Q |
| |
|
||||||| |||||||||||||||||||||| |
|
|
| T |
40727465 |
ttcaaccataaatttcgtatgaactcagtt |
40727494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 330
Target Start/End: Complemental strand, 625283 - 624955
Alignment:
| Q |
1 |
atggtgggtcttttcttcacttgctcttactcaagtatctcttgaagatgtcaatattcattttgaaattctttgtagcatttctaatttcagttgcata |
100 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
625283 |
atggtggctcttttcttcacttgctcttactcaagtatctcttgaagatgtcaatattcattttgaaattctttgtagtatttctaatttcagttgcata |
625184 |
T |
|
| Q |
101 |
cccatcatcttttagacaaccactcattgtttctcctacatcccaactcctctgcaagtgttttttaccaaatacaattccatgttttctagttttagct |
200 |
Q |
| |
|
||||||||||| || |||||||||||||||||||| |||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| | |
|
|
| T |
625183 |
cccatcatcttcta-acaaccactcattgtttctcttacatcccaactcctcagcaagtgtattttaccaaatacaattccatgttttctagttttagtt |
625085 |
T |
|
| Q |
201 |
ataacttatatgggtcttctaagatgnnnnnnnnnnnnnattatgtcatggactaagatggaaatttgtttaaagaaaaaatttgttacccaatttctac |
300 |
Q |
| |
|
|||||| |||||||||||||||||| |||||||||| |||||||||| ||||||||||||| |||||||||| ||||||||||||| |
|
|
| T |
625084 |
gtaacttgtatgggtcttctaagatgttttttaatttttattatgtcatagactaagatgaaaatttgtttaaaaaaaaaatttgcaacccaatttctac |
624985 |
T |
|
| Q |
301 |
ttcaaccgtaaatttcgtatgaactcagtt |
330 |
Q |
| |
|
||||||| |||||||||||||||||||||| |
|
|
| T |
624984 |
ttcaaccataaatttcgtatgaactcagtt |
624955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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