View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19076_high_9 (Length: 224)
Name: NF19076_high_9
Description: NF19076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19076_high_9 |
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Alignment Details
Target: chr7 (Bit Score: 172; Significance: 1e-92; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 18 - 197
Target Start/End: Original strand, 3739630 - 3739809
Alignment:
| Q |
18 |
ttccatgcatcaaaagtgggggtgttaggtttgaaatcaaaggaaaccctaactttttgcttgttttggtgttcaatgttgccaatgcgggagatgtttc |
117 |
Q |
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| T |
3739630 |
ttccatgcatcaaaagtgggggtgttaggtttgaaatcaaaggaaaccctaactttttgcttgttttggtgttcaatgttgccaatgcgggagatgtttc |
3739729 |
T |
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| Q |
118 |
tagtgttagtatcaaagggtctaataccgaatggattcccatgtcacacaattgggggcaaaattggaataccggaatga |
197 |
Q |
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| T |
3739730 |
tagtgttagtatcaaagggtctaataccggatggattcccatgtcacacaattgggggcaaaattggaatactggaatga |
3739809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 18 - 184
Target Start/End: Original strand, 3745347 - 3745513
Alignment:
| Q |
18 |
ttccatgcatcaaaagtgggggtgttaggtttgaaatcaaaggaaaccctaactttttgcttgttttggtgttcaatgttgccaatgcgggagatgtttc |
117 |
Q |
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| T |
3745347 |
ttccatgcatcaaaagtggtggtgttagattcgagctcaaaggaaaccctaatttctttctagttttggtgcacaatgttgccaatgctggtgatgtttc |
3745446 |
T |
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| Q |
118 |
tagtgttagtatcaaagggtctaataccgaatggattcccatgtcacacaattgggggcaaaattgg |
184 |
Q |
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| T |
3745447 |
tcgtgtgagtattaaagggtccaagacaagttggatttctatgtcacgtaattggggacaaaattgg |
3745513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 29 - 184
Target Start/End: Original strand, 3732290 - 3732448
Alignment:
| Q |
29 |
aaaagtgggggtgttaggtttgaaatcaaaggaaaccctaactttttgcttgttttggtgttcaatgttgccaatgcgggagatgtttctagtgttagta |
128 |
Q |
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| T |
3732290 |
aaaagtgggggtgttaggtttgaactcaatggaaatccttattttttgattgtcttggtgtataatgttgccaatgctggtgatgtttctcatgttagtg |
3732389 |
T |
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| Q |
129 |
tcaaagggtctaa---taccgaatggattcccatgtcacacaattgggggcaaaattgg |
184 |
Q |
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| T |
3732390 |
ttagagggtcgaagacgaccggttggatttcgatgtcacacaattggggacaaaattgg |
3732448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 18 - 115
Target Start/End: Complemental strand, 22732964 - 22732867
Alignment:
| Q |
18 |
ttccatgcatcaaaagtgggggtgttaggtttgaaatcaaaggaaaccctaactttttgcttgttttggtgttcaatgttgccaatgcgggagatgtt |
115 |
Q |
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| T |
22732964 |
ttccatgcgtcaaaagtggtggtgttagatttgaactaaaaggaaacccttattttttgatggttttggtgtacaatgttgccaacgctggtgatgtt |
22732867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 18 - 174
Target Start/End: Complemental strand, 20522302 - 20522146
Alignment:
| Q |
18 |
ttccatgcatcaaaagtgggggtgttaggtttgaaatcaaaggaaaccctaactttttgcttgttttggtgttcaatgttgccaatgcgggagatgtttc |
117 |
Q |
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|||||||||| |||| |||||| ||| | ||||| | | |||||| ||| |||||||| | |||||||||| |||||||| ||||| || ||||||| |
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| T |
20522302 |
ttccatgcataaaaaatgggggcgttcgatttgagctaagaggaaatccttactttttgatggttttggtgtataatgttgctaatgcaggtgatgtttt |
20522203 |
T |
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| Q |
118 |
tagtgttagtatcaaagggtctaataccgaatggattcccatgtcacacaattgggg |
174 |
Q |
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||||| || ||||||||||||| ||| | |||||| ||||| ||||||||||||| |
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| T |
20522202 |
aagtgtgagaatcaaagggtctagtacatattggatttccatggcacacaattgggg |
20522146 |
T |
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