View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19076_low_10 (Length: 233)
Name: NF19076_low_10
Description: NF19076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19076_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 31901624 - 31901402
Alignment:
| Q |
1 |
tacataagtctttgaccaagtatgcaagtaagtaaacatatgaaacatatttttgatgggtaaattttaattaacttttgaaatataataataacaacta |
100 |
Q |
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| T |
31901624 |
tacataagtctttgaccaagtatgcaagtaagtaaacatatgaaacatatttttgatgggtaaattttaattaacttttgaaatataataataacaacta |
31901525 |
T |
|
| Q |
101 |
aaattacaacatggatttgtttttgggtgtgaatcatgccaaagatatggtggaactagacgg-aaataactcatagtatacgtgtgaccaatcaatgtc |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
31901524 |
aaattacaacatggatttgtttttgggtgtgaatcatgccaaagatatggtggaactagacggaaaataactcatagtatacgtgtgaccaatcaatgtc |
31901425 |
T |
|
| Q |
200 |
acttcccaaacaatcttcaaact |
222 |
Q |
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||||| ||| ||||||||||||| |
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| T |
31901424 |
acttctcaaccaatcttcaaact |
31901402 |
T |
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Target: chr4 (Bit Score: 79; Significance: 5e-37; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 10 - 111
Target Start/End: Complemental strand, 17893205 - 17893103
Alignment:
| Q |
10 |
ctttgaccaagtatgcaagtaagtaaacatatgaaacatatttttgatggg-taaattttaattaacttttgaaatataataataacaactaaaattaca |
108 |
Q |
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||||||||||||| |||||||| ||||||| ||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17893205 |
ctttgaccaagtaagcaagtaattaaacatgtgaaacatatttttggtgggctaaattttaattaacttttgaaatataataataacaactaaaattaca |
17893106 |
T |
|
| Q |
109 |
aca |
111 |
Q |
| |
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||| |
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| T |
17893105 |
aca |
17893103 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 56; Significance: 2e-23; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 9 - 111
Target Start/End: Complemental strand, 8040326 - 8040223
Alignment:
| Q |
9 |
tctttgaccaagtatgcaagtaagtaaacatatgaaacatatttttgatggg-taaattttaattaacttttgaaatataataataacaactaaaattac |
107 |
Q |
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||||||||||| || ||||||| ||| ||| | ||||||||||||| |||| |||||||||||||| |||||||||||||||||||||| ||||||||| |
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| T |
8040326 |
tctttgaccaaataaacaagtaattaagcatgtaaaacatatttttggtgggctaaattttaattaaattttgaaatataataataacaattaaaattac |
8040227 |
T |
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| Q |
108 |
aaca |
111 |
Q |
| |
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|||| |
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|
| T |
8040226 |
aaca |
8040223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 30 - 91
Target Start/End: Original strand, 21501730 - 21501792
Alignment:
| Q |
30 |
aagtaaacatatgaaacatatttttgatggg-taaattttaattaacttttgaaatataataa |
91 |
Q |
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|||||||||| |||||||||||||||||| | ||||||||||||||||||||||||| ||||| |
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| T |
21501730 |
aagtaaacatgtgaaacatatttttgatgagctaaattttaattaacttttgaaataaaataa |
21501792 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 11 - 91
Target Start/End: Original strand, 26445559 - 26445640
Alignment:
| Q |
11 |
tttgaccaagtatgcaagtaagtaaacatatgaaacatatttttgatg-ggtaaattttaattaacttttgaaatataataa |
91 |
Q |
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|||||||||||| |||||||||||||||| ||||||||||||| |||| | ||||||||||||||||||||||||| ||||| |
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| T |
26445559 |
tttgaccaagtaagcaagtaagtaaacatgtgaaacatattttagatgagctaaattttaattaacttttgaaataaaataa |
26445640 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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