View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19076_low_12 (Length: 220)
Name: NF19076_low_12
Description: NF19076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19076_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 19 - 102
Target Start/End: Original strand, 32678511 - 32678593
Alignment:
| Q |
19 |
ctcgagccatagattcaaatagaaatattaactatcatattgaatgaaaatgaatattgttcgccaagcatagactataaaaac |
102 |
Q |
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| T |
32678511 |
ctcgagccatagattcaaatagaaa-attaactattatattgaatgaaaatgactattgttcgccaagcatagactataaaaac |
32678593 |
T |
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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 71
Target Start/End: Complemental strand, 12251690 - 12251644
Alignment:
| Q |
25 |
ccatagattcaaatagaaatattaactatcatattgaatgaaaatga |
71 |
Q |
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| T |
12251690 |
ccatagattcaaatagaaatagtaacaattatattgaatgaacatga |
12251644 |
T |
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Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 109 - 153
Target Start/End: Complemental strand, 40180149 - 40180104
Alignment:
| Q |
109 |
aagatttttatgcagccaagc-gttgatctttaaaatgattgcaga |
153 |
Q |
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| T |
40180149 |
aagattttgatgcagccaagcagttgatctttaaaatgattgcaga |
40180104 |
T |
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