View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19076_low_2 (Length: 422)
Name: NF19076_low_2
Description: NF19076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19076_low_2 |
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| [»] scaffold0097 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 12 - 405
Target Start/End: Complemental strand, 18949691 - 18949306
Alignment:
| Q |
12 |
atgaaacacatgatccgttacagcaatgcattgtatggtggtcttgatcgggttgcaagtacactcaaggtggatcgggttgttggaaagtgtcatcaat |
111 |
Q |
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| T |
18949691 |
atgaaacacatgatccgctacagcaatgcattgtatggtggtcttgatcgggttgcaagtacactcaaggtggatcgggttgttggaaagtgtcatcaat |
18949592 |
T |
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| Q |
112 |
ctggatctgatagcttgttgacatggcacacttttgataagttggtgcaaacacatttcagtcacaaagaatttgaaaaatacgctggagtagtatttgg |
211 |
Q |
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| T |
18949591 |
ctggatccgatagcttgttgacatggcacacttttgataagttggtgcaaacacatttcagtcacagagaatttgaaaaatacgctggagtagtatttgg |
18949492 |
T |
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| Q |
212 |
attagaagttcctcgataaattgtaaaatcgaaagttgtaacatcaagattagaaacatattcaaaaatttcgtttcattgaattattgttttttaatgt |
311 |
Q |
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| T |
18949491 |
attagaagttcctcgataaattgtaaaatcgaaagttgtaacatcaaaatcagaaacatattaaaaaaaattgtttctttgaactactgttttttaatgt |
18949392 |
T |
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| Q |
312 |
taatcagtcatgacttacttacttactttattccgtcttttagctgccgtgattttattctgttatgactatatatgagtattgtaaagcaagt |
405 |
Q |
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| T |
18949391 |
taatcagtcatgacttactt----actttattccgtcttttagctgccgtgattttattctgttacgac----tatgagtattgtaaagcaagt |
18949306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0097 (Bit Score: 97; Significance: 2e-47; HSPs: 1)
Name: scaffold0097
Description:
Target: scaffold0097; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 181 - 313
Target Start/End: Original strand, 23458 - 23590
Alignment:
| Q |
181 |
aatttgaaaaatacgctggagtagtatttggattagaagttcctcgataaattgtaaaatcgaaagttgtaacatcaagattagaaacatattcaaaaat |
280 |
Q |
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| T |
23458 |
aatttgaaaaatacgctggagtagtatttggattagaagttcctcgataaattgtaaaatcgaaagttgtaacatcaaaatcagaaacatattcaaaaaa |
23557 |
T |
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| Q |
281 |
ttcgtttcattgaattattgttttttaatgtta |
313 |
Q |
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| T |
23558 |
attgtttctttcaactactgttttttaatgtta |
23590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 97; Significance: 2e-47; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 181 - 313
Target Start/End: Original strand, 20719620 - 20719752
Alignment:
| Q |
181 |
aatttgaaaaatacgctggagtagtatttggattagaagttcctcgataaattgtaaaatcgaaagttgtaacatcaagattagaaacatattcaaaaat |
280 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| |
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| T |
20719620 |
aatttgaaaaatacgctggagtagtatttggattagaagttcctcgataaattgtaaaatcgaaagttgtaacatcaaaatcagaaacatattcaaaaaa |
20719719 |
T |
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| Q |
281 |
ttcgtttcattgaattattgttttttaatgtta |
313 |
Q |
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| T |
20719720 |
attgtttctttcaactactgttttttaatgtta |
20719752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 12 - 139
Target Start/End: Complemental strand, 40871802 - 40871675
Alignment:
| Q |
12 |
atgaaacacatgatccgttacagcaatgcattgtatggtggtcttgatcgggttgcaagtacactcaaggtggatcgggttgttggaaagtgtcatcaat |
111 |
Q |
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|||||||||||||| | | | |||| || |||||||||||||| || || || || |||||||| || ||| ||| | ||||||||||| |||||| |
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| T |
40871802 |
atgaaacacatgatgaggttctgcaacgctttgtatggtggtctcgagcgagtcgctagtacacttaatgtgtgtcgagctgttggaaagtcgcatcaag |
40871703 |
T |
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| Q |
112 |
ctggatctgatagcttgttgacatggca |
139 |
Q |
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| T |
40871702 |
ctggatcagatagtttgttgacatggca |
40871675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 46 - 221
Target Start/End: Complemental strand, 54703838 - 54703663
Alignment:
| Q |
46 |
atggtggtcttgatcgggttgcaagtacactcaaggtggatcgggttgttggaaagtgtcatcaatctggatctgatagcttgttgacatggcacacttt |
145 |
Q |
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| T |
54703838 |
atggtggtcttgaacgggttgctaatattctcgacgtggatcgggccattggaaagtcacatcaagctggatctgatagtttattaacatggcagacttt |
54703739 |
T |
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| Q |
146 |
tgataagttggtgcaaacacatttcagtcacaaagaatttgaaaaatacgctggagtagtatttggattagaagtt |
221 |
Q |
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| T |
54703738 |
tcagaaaatagtgcacacacatttcaccaacaatgaagtccaaaaatatgctggaataattttcggattagaagtt |
54703663 |
T |
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