View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19076_low_3 (Length: 416)
Name: NF19076_low_3
Description: NF19076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19076_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 375; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 17 - 395
Target Start/End: Complemental strand, 34695233 - 34694855
Alignment:
| Q |
17 |
atcatcaggtgcactcatgtcaatggccggagggagaggagcaagatcagttgaatgatcatcattacttgaagctgtcgtgacaccaaaattaagttgt |
116 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34695233 |
atcagcaggtgcactcatgtcaatggccggagggagaggagcaagatcagttgaatgatcatcattacttgaagctgtcgtgacaccaaaattaagttgt |
34695134 |
T |
|
| Q |
117 |
gggtcttgttgatgcatatgcatcatatgaatcgactcctcttgaatattctcttgatcaaaaaggtcattgattgagcagattccatttttgtttccat |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34695133 |
gggtcttgttgatgcatatgcatcatatgaatcgactcctcttgaatattctcttgatcaaaaaggtcattgattgagcagattccatttttgtttccat |
34695034 |
T |
|
| Q |
217 |
agttcatgatgttatcataattaagtagaggcagatcaacattttcttgaggtaaagattgactcatatttggaaaaccagagaagtaattaaacccctc |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34695033 |
agttcatgatgttatcataattaagtagaggcagatcaacattttcttgaggtaaagattgactcatatttggaaaaccagagaagtaattaaacccctc |
34694934 |
T |
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| Q |
317 |
tggcgttatcatgtcattaagcactacccttttattaatatgattctcaaccgggaaagaggaaaatgggggtgtaggt |
395 |
Q |
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| T |
34694933 |
tggcgttatcatgtcattaagcactacccttttattaatatgattctcaaccgggaaagaggaaaatgggggtgtaggt |
34694855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 15 - 395
Target Start/End: Complemental strand, 34687306 - 34686929
Alignment:
| Q |
15 |
acatcatcaggtgcactcatgtcaatggccggagggagaggagcaagatcagttgaatgatcatcattacttgaagctgtcgtgacaccaaaattaagtt |
114 |
Q |
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| T |
34687306 |
acatcaacaggtgcactcatgtcaatggccggaggtagaggagcaagatcagttgaat---catcattacttgaagttgtcgtgacaccaaaattaaatt |
34687210 |
T |
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| Q |
115 |
gtgggtcttgttgatgcatatgcatcatatgaatcgactcctcttgaatattctcttgatcaaaaaggtcattgattgagcagattccatttttgtttcc |
214 |
Q |
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||||||||||||| ||||| |||||||||| |||| |||||||||||||||||||||| |||||| |||| || |||| |||||||||||| ||| | |
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| T |
34687209 |
gtgggtcttgttggtgcatgtgcatcatattcatcgcttcctcttgaatattctcttgataaaaaagatcatggactgagtagattccattttcattttc |
34687110 |
T |
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| Q |
215 |
atagttcatgatgttatcataattaagtagaggcagatcaacattttcttgaggtaaagattgactcatatttggaaaaccagagaagtaattaaacccc |
314 |
Q |
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| T |
34687109 |
attgttcatgatgttatcataattcagcagaggcagatcaacattttgttgaggtgagggttcaatcatattcgggaaatcagagaagtaattagacccc |
34687010 |
T |
|
| Q |
315 |
tctggcgttatcatgtcattaagcactacccttttattaatatgattctcaaccgggaaagaggaaaatgggggtgtaggt |
395 |
Q |
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| T |
34687009 |
tctagtgttgtcatgtcattaagcactaccctttcattaatatgattctcaaccgggaaagagggaaatgggggtgtaggt |
34686929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 59; Significance: 7e-25; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 45 - 271
Target Start/End: Complemental strand, 8285179 - 8284953
Alignment:
| Q |
45 |
ggagggagaggagcaagatcagttgaatgatcatcattacttgaagctgtcgtgacaccaaaattaagttgtgggtcttgttgatgcatatgcatcatat |
144 |
Q |
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||||| ||||||||||||||| ||| | ||||||||| ||||| | ||| | |||||||||||||||||||||||||| || | ||| || ||||||| |
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| T |
8285179 |
ggaggaagaggagcaagatcaactgactcatcatcattgcttgatgttgtagcaacaccaaaattaagttgtgggtcttgctggtacatgtgaatcatat |
8285080 |
T |
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| Q |
145 |
gaatcgactcctcttgaatattctcttgatcaaaaaggtcattgattgagcagattccatttttgtttccatagttcatgatgttatcataattaagtag |
244 |
Q |
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| T |
8285079 |
tcattgcttcctcttgaatcttctcttgatcatatcggtgattcattgaggcaattccacttttacttccatagttcatggtgatctcatgattaactag |
8284980 |
T |
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| Q |
245 |
aggcagatcaacattttcttgaggtaa |
271 |
Q |
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| T |
8284979 |
aggtacatcaacattctgttgaggtaa |
8284953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 291 - 395
Target Start/End: Complemental strand, 8284906 - 8284805
Alignment:
| Q |
291 |
aaaccagagaagtaattaaacccctctggcgttatcatgtcattaagcactacccttttattaatatgattctcaaccgggaaagaggaaaatgggggtg |
390 |
Q |
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|||||||| |||| |||||||| | ||| | | ||||| ||||| ||||||| || |||||||||||||| || ||||||||| |||||||||||| |
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| T |
8284906 |
aaaccagataagtgattaaacctatgtggtggtgtcatggcattaggcactac---ttcattaatatgattctgcacagggaaagagaaaaatgggggtg |
8284810 |
T |
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| Q |
391 |
taggt |
395 |
Q |
| |
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||||| |
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| T |
8284809 |
taggt |
8284805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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