View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19076_low_6 (Length: 355)
Name: NF19076_low_6
Description: NF19076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19076_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 1 - 339
Target Start/End: Complemental strand, 40291171 - 40290833
Alignment:
| Q |
1 |
atgatagtgtaagtgggtcctacacattggagtggagaatgagatgatcctcaaatgaacataaacccaaaaagaatattgacttgtttaattaattaat |
100 |
Q |
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| T |
40291171 |
atgatagtgtaagtgggtcctacacattggagtggagaatgagatgatcctcaaatgaacataaacccaaaaagaatattgacttgtttaattaattaat |
40291072 |
T |
|
| Q |
101 |
gatattctagatatggtggtaaggggcagagaaacaattagaaaaggctatgcctcttgtgttgtggcacaaagttgaggcaagaggggcccattaaatg |
200 |
Q |
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| T |
40291071 |
gatattctagatatggtggtaaggggcagagaaacaattagaaaaggctatgcctcttgtgttgtggcacaaagttgaggcaagaggggcccattaaatg |
40290972 |
T |
|
| Q |
201 |
caaaatatgtatatgataggaagcactaataacgtagatggaatgggagatatatatactcttttttgacacaaatacattgtggatttgatgtcagtgg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40290971 |
caaaatatgtatatgataggaagcactaataacgtagatggaatgggagatatatatactcttttttgacacaaatacattgtggatttgatgtcagtgg |
40290872 |
T |
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| Q |
301 |
aggtgtgctagcagcctagctagcacaattagtggatga |
339 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
40290871 |
aggtgtgctagcagcctagctagcacaattagtggatga |
40290833 |
T |
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