View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19076_low_9 (Length: 235)

Name: NF19076_low_9
Description: NF19076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19076_low_9
NF19076_low_9
[»] chr4 (9 HSPs)
chr4 (123-213)||(7877455-7877545)
chr4 (123-216)||(7774079-7774172)
chr4 (123-208)||(7908063-7908148)
chr4 (137-195)||(7771153-7771211)
chr4 (137-195)||(7789838-7789896)
chr4 (137-214)||(7237975-7238049)
chr4 (143-193)||(7765376-7765426)
chr4 (143-193)||(7786198-7786248)
chr4 (123-188)||(7904767-7904832)
[»] chr3 (1 HSPs)
chr3 (153-195)||(11006233-11006275)


Alignment Details
Target: chr4 (Bit Score: 67; Significance: 7e-30; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 123 - 213
Target Start/End: Original strand, 7877455 - 7877545
Alignment:
Q  123 tagaattatgtgtgtatcacctctatctcatgaaattcgattcatagattttgaagcatttcttaacgatgatgatcctgcttcacagaac 213  Q
    ||||||||||||  |||||||||||||||||||||||||||  |||| |||||||||||||||||||||||||||||||||||||| ||||    
T  7877455 tagaattatgtgcatatcacctctatctcatgaaattcgatcaataggttttgaagcatttcttaacgatgatgatcctgcttcactgaac 7877545  T

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Target: chr4; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 123 - 216
Target Start/End: Complemental strand, 7774172 - 7774079
Alignment:
Q  123 tagaattatgtgtgtatcacctctatctcatgaaattcgattcatagattttgaagcatttcttaacgatgatgatcctgcttcacagaacctt 216  Q
    ||||||||||||  ||||| |||||||||||||||||||||  |||| |||||||||||||||||||||||||||| ||||||||  |||||||    
T  7774172 tagaattatgtgcatatcatctctatctcatgaaattcgatctataggttttgaagcatttcttaacgatgatgatactgcttcagtgaacctt 7774079  T

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Target: chr4; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 123 - 208
Target Start/End: Original strand, 7908063 - 7908148
Alignment:
Q  123 tagaattatgtgtgtatcacctctatctcatgaaattcgattcatagattttgaagcatttcttaacgatgatgatcctgcttcac 208  Q
    ||||||||||| | ||||| ||||||||||||||| |||||  ||||||||| |||||||||||||||||||||||||||||||||    
T  7908063 tagaattatgtttatatcaactctatctcatgaaactcgatctatagattttaaagcatttcttaacgatgatgatcctgcttcac 7908148  T

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Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 137 - 195
Target Start/End: Original strand, 7771153 - 7771211
Alignment:
Q  137 tatcacctctatctcatgaaattcgattcatagattttgaagcatttcttaacgatgat 195  Q
    ||||| ||| |||||||||||||||||  ||||||||||||||||||||||||||||||    
T  7771153 tatcaactcaatctcatgaaattcgatctatagattttgaagcatttcttaacgatgat 7771211  T

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Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 137 - 195
Target Start/End: Original strand, 7789838 - 7789896
Alignment:
Q  137 tatcacctctatctcatgaaattcgattcatagattttgaagcatttcttaacgatgat 195  Q
    ||||| ||| ||||||||||||| |||  ||||||||||||||||||||||||||||||    
T  7789838 tatcaactcaatctcatgaaatttgatctatagattttgaagcatttcttaacgatgat 7789896  T

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Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 137 - 214
Target Start/End: Complemental strand, 7238049 - 7237975
Alignment:
Q  137 tatcacctctatctcatgaaattcgattcatagattttgaagcatttcttaacgatgatgatcctgcttcacagaacc 214  Q
    |||||||| ||||||||||||||||||  || |||  ||||||||||||||||||   |||||||| |||||||||||    
T  7238049 tatcacctttatctcatgaaattcgatcaatcgatcctgaagcatttcttaacga---tgatcctggttcacagaacc 7237975  T

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Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 193
Target Start/End: Original strand, 7765376 - 7765426
Alignment:
Q  143 ctctatctcatgaaattcgattcatagattttgaagcatttcttaacgatg 193  Q
    ||||||||| |||||||||||  || |||||||| ||||||||||||||||    
T  7765376 ctctatctcctgaaattcgatcaattgattttgatgcatttcttaacgatg 7765426  T

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Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 193
Target Start/End: Original strand, 7786198 - 7786248
Alignment:
Q  143 ctctatctcatgaaattcgattcatagattttgaagcatttcttaacgatg 193  Q
    ||||||||| |||||||||||  || |||||||| ||||||||||||||||    
T  7786198 ctctatctcctgaaattcgatcaattgattttgatgcatttcttaacgatg 7786248  T

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Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 123 - 188
Target Start/End: Original strand, 7904767 - 7904832
Alignment:
Q  123 tagaattatgtgtgtatcacctctatctcatgaaattcgattcatagattttgaagcatttcttaa 188  Q
    ||||||||||||  |||||  ||||||||||||||||| ||   || |||||||||||||||||||    
T  7904767 tagaattatgtgcatatcatatctatctcatgaaattcaatctttatattttgaagcatttcttaa 7904832  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 153 - 195
Target Start/End: Complemental strand, 11006275 - 11006233
Alignment:
Q  153 tgaaattcgattcatagattttgaagcatttcttaacgatgat 195  Q
    ||||||||||| |||||||||||||||||  ||||||||||||    
T  11006275 tgaaattcgatccatagattttgaagcatcgcttaacgatgat 11006233  T

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