View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19077_low_2 (Length: 324)
Name: NF19077_low_2
Description: NF19077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19077_low_2 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 10 - 324
Target Start/End: Original strand, 33123231 - 33123546
Alignment:
| Q |
10 |
aagaatataatccagtcattgttacacagtccgcaacgaatacaacaatatatagaaaatttagaaaggnnnnnnntaac-aaagatattttctttactt |
108 |
Q |
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| T |
33123231 |
aagaatataatccagtcattgttacacaatccgcaacgaatacaacaatatgtagaaaatttagaaaggaaaaaaataacaaaagatattttctttactt |
33123330 |
T |
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| Q |
109 |
aaatgaaaatgacaaataggtgaccattttgtcaaaccccatannnnnnnccatggtggcagagattgtcaaaccccatatattcttcattttccatctt |
208 |
Q |
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| T |
33123331 |
aaatgaaaatgacaaataggtgaccattttgtcaaaccccatatttttttccatggtggcagagattgtcaaaccccatatattcttcattttccatctt |
33123430 |
T |
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| Q |
209 |
ctcaaccatgttccctattcccaccccacctgtgatgcccaaaaatcagacattgttagtaagaataatattccaaaataaattttatccttactttatg |
308 |
Q |
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| T |
33123431 |
ctcaaccatattccctattcccaccccacctgtgatgcccaaaaatgagacattgttagtaagaataatattccaaaataaattttatccttactttatg |
33123530 |
T |
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| Q |
309 |
gttaaaatttggagaa |
324 |
Q |
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| T |
33123531 |
gttaaaatttggagaa |
33123546 |
T |
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Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 171 - 244
Target Start/End: Complemental strand, 7582341 - 7582268
Alignment:
| Q |
171 |
agattgtcaaaccccatatattcttcattttccatcttctcaaccatgttccctattcccaccccacctgtgat |
244 |
Q |
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| T |
7582341 |
agattttcaaaccccatatactcatgattttccatcttcacaatcattttctctattcctactccacctgtgat |
7582268 |
T |
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