View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19077_low_3 (Length: 284)
Name: NF19077_low_3
Description: NF19077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19077_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 269
Target Start/End: Original strand, 33123524 - 33123781
Alignment:
| Q |
1 |
ctttatggttaaaatttggagaaatttttaaaataatagagtacctaaactgattgcgctcacaaaaatggtgaaagctaatatgaagacaatgatagat |
100 |
Q |
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| T |
33123524 |
ctttatggttaaaatttggagaaatttttaaaataatagagtacctaaactgattgcgctcacaaaaatggtgaaagctaatatgaagacgatgatagat |
33123623 |
T |
|
| Q |
101 |
gctctaccaaagatagcaattatctttctcaccacatgttggccggttaatgcagctatggttgcaaccaatactaagtatgaagctgcatcataacata |
200 |
Q |
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| T |
33123624 |
gctctaccaaagatagcaattatctttctcaccacatgttggccggttaatgcagctatggttgcaaccaatactaagtatgaagctgcatcataacata |
33123723 |
T |
|
| Q |
201 |
aatcacttcacgtcaaacacaattataacaaaattaattttacaaaatcatcatgtttgtctaatatat |
269 |
Q |
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| T |
33123724 |
aatcacttcacttca-----------aacaaaattaattttacaaaatcatcatgtttgtctaatatat |
33123781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 67; Significance: 8e-30; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 40 - 190
Target Start/End: Complemental strand, 7571990 - 7571840
Alignment:
| Q |
40 |
agtacctaaactgattgcgctcacaaaaatggtgaaagctaatatgaagacaatgatagatgctctaccaaagatagcaattatctttctcaccacatgt |
139 |
Q |
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| T |
7571990 |
agtacctaaactgattgcacttatgaaaatggtggatgctagtatgaagataataattgatgcacgaccaaggattgcaattatccttctcaccacatgc |
7571891 |
T |
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| Q |
140 |
tggccggttaatgcagctatggttgcaaccaatactaagtatgaagctgca |
190 |
Q |
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| T |
7571890 |
tggccagcaaatgcagctatggttgcaaccaaaacaaagtatgaagctgca |
7571840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 40 - 190
Target Start/End: Complemental strand, 7582185 - 7582035
Alignment:
| Q |
40 |
agtacctaaactgattgcgctcacaaaaatggtgaaagctaatatgaagacaatgatagatgctctaccaaagatagcaattatctttctcaccacatgt |
139 |
Q |
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|||||||||||||||||| || | || ||||| | || | |||||||| || || ||||| | ||||| ||| ||||||||||||||||||||||| |
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| T |
7582185 |
agtacctaaactgattgcacttatgaagatggtcgatgcaagtatgaagatgataatggatgcacgaccaaggattgcaattatctttctcaccacatgc |
7582086 |
T |
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| Q |
140 |
tggccggttaatgcagctatggttgcaaccaatactaagtatgaagctgca |
190 |
Q |
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||||| | || |||||||||||||||||||| || ||||||||||||||| |
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| T |
7582085 |
tggccagcaaacgcagctatggttgcaaccaaaacaaagtatgaagctgca |
7582035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 195 - 250
Target Start/End: Original strand, 38584667 - 38584722
Alignment:
| Q |
195 |
aacataaatcacttcacgtcaaacacaattataacaaaattaattttacaaaatca |
250 |
Q |
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||||||||||||||||| ||||| |||||| |||| ||||||||||||||| |||| |
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| T |
38584667 |
aacataaatcacttcacttcaaatacaattttaaccaaattaattttacaagatca |
38584722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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