View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19077_low_4 (Length: 265)
Name: NF19077_low_4
Description: NF19077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19077_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 236; Significance: 1e-130; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 2 - 257
Target Start/End: Original strand, 28674767 - 28675022
Alignment:
| Q |
2 |
ggttcccagaaaaatgcaagtgtgtccctccaatcagcagattggtcttggtaaagagtaaaattggaaagataaacaacttttttggtgagatcacggg |
101 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
28674767 |
ggttcccagaaaaatgcaagtgtgtccctccaatcagcagattggtcttggtaaagagtaaaattggagagataaacaacttttttggtgagatcacggg |
28674866 |
T |
|
| Q |
102 |
tgtagtactccttcctcaccttggcatcttgttggtgaaatctacaagttccattgatcatgtcatccaaaatatgtgttggaattccatgatttattac |
201 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| || |
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| T |
28674867 |
tgtagtactccttcctcgccttggcatcttgttggtgaaatctacaagttcctttgatcatctcatccaaaatatgtgttggaattccatgatttatcac |
28674966 |
T |
|
| Q |
202 |
ttgaaagaatccccatttctcacttgcattttgaacttttctcacaacttcatctc |
257 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28674967 |
ttgaaagaatccccatttctcacttgcattttgaacttttctcacaacttcatctc |
28675022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 257
Target Start/End: Original strand, 28670622 - 28670878
Alignment:
| Q |
1 |
gggttcccagaaaaatgcaagtgtgtccctccaatcagcagattggtcttggtaaagagtaaaattggaaagataaacaacttttttggtgagatcacgg |
100 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
28670622 |
gggtgcccagaaaaatgcaagtgtgtccctccaatcagcagattggtctaggtagagagtaaaattggaaagataaacaacttttttggtaagatcacgg |
28670721 |
T |
|
| Q |
101 |
gtgtagtactccttcctcaccttggcatcttgttggtgaaatctacaagttccattgatcatgtcatccaaaatatgtgttggaattccatgatttatta |
200 |
Q |
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| T |
28670722 |
gtgtagtactccttcctcaccttggcatcttgttggtgaaatctacaagttccattgatcatctcatccaaaatctgtgttggaattccatgatttatta |
28670821 |
T |
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| Q |
201 |
cttgaaagaatccccatttctcacttgcattttgaacttttctcacaacttcatctc |
257 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||| ||||||||||||| |
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| T |
28670822 |
cttgaaagaatccccatttctcacttgcatttcgaacttttcttacaacttcatctc |
28670878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 6 - 257
Target Start/End: Original strand, 28642044 - 28642295
Alignment:
| Q |
6 |
cccagaaaaatgcaagtgtgtccctccaatcagcagattggtcttggtaaagagtaaaattggaaagataaacaacttttttggtgagatcacgggtgta |
105 |
Q |
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|||||||||||||||||||||||||||| ||||||||||| |||| | |||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
28642044 |
cccagaaaaatgcaagtgtgtccctccactcagcagattgatcttcggaaagagtaaaattggaaagataaacaacttttttagtgagatcacgggtgta |
28642143 |
T |
|
| Q |
106 |
gtactccttcctcaccttggcatcttgttggtgaaatctacaagttccattgatcatgtcatccaaaatatgtgttggaattccatgatttattacttga |
205 |
Q |
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||||| ||||||||||| | ||| ||||| ||||||||||||||||| |||||||| |||||||||| ||| ||||||||||||||||||||||||| |
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| T |
28642144 |
atactctttcctcaccttaggatcctgttgatgaaatctacaagttcctttgatcatctcatccaaaacatgaactggaattccatgatttattacttga |
28642243 |
T |
|
| Q |
206 |
aagaatccccatttctcacttgcattttgaacttttctcacaacttcatctc |
257 |
Q |
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||||||||||||||||||| |||||||| || || ||||||||||||||||| |
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| T |
28642244 |
aagaatccccatttctcacatgcattttcaagttgtctcacaacttcatctc |
28642295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 6 - 257
Target Start/End: Original strand, 28650905 - 28651156
Alignment:
| Q |
6 |
cccagaaaaatgcaagtgtgtccctccaatcagcagattggtcttggtaaagagtaaaattggaaagataaacaacttttttggtgagatcacgggtgta |
105 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||| |||| | |||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
28650905 |
cccagaaaaatgcaagtgtgtccctccactcagcagattgatcttcggaaagagtaaaattggaaagataaacaacttttttagtgagatcacgggtgta |
28651004 |
T |
|
| Q |
106 |
gtactccttcctcaccttggcatcttgttggtgaaatctacaagttccattgatcatgtcatccaaaatatgtgttggaattccatgatttattacttga |
205 |
Q |
| |
|
||||| ||||||||||| | ||| ||||| ||||||||||||||||| |||||||| |||| ||||| ||| ||||||||||||||||||||||||| |
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| T |
28651005 |
atactctttcctcaccttaggatcctgttgatgaaatctacaagttcctttgatcatctcatgcaaaacatgaactggaattccatgatttattacttga |
28651104 |
T |
|
| Q |
206 |
aagaatccccatttctcacttgcattttgaacttttctcacaacttcatctc |
257 |
Q |
| |
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||||||||||||||||||| |||||||| || || ||||||||||||||||| |
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| T |
28651105 |
aagaatccccatttctcacatgcattttcaagttgtctcacaacttcatctc |
28651156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 18 - 256
Target Start/End: Original strand, 28696144 - 28696382
Alignment:
| Q |
18 |
caagtgtgtccctccaatcagcagattggtcttggtaaagagtaaaattggaaagataaacaacttttttggtgagatcacgggtgtagtactccttcct |
117 |
Q |
| |
|
|||||| ||||||||||| ||||| | || ||||||||| || |||| |||| |||||||||||| ||| || |||| | || || ||||| || || |
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| T |
28696144 |
caagtgagtccctccaattagcagcaggatcatggtaaagactataattagaaacataaacaactttcttgttgggatcgcatgtataatactcttttct |
28696243 |
T |
|
| Q |
118 |
caccttggcatcttgttggtgaaatctacaagttccattgatcatgtcatccaaaatatgtgttggaattccatgatttattacttgaaagaatccccat |
217 |
Q |
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|||||||||||||||||| ||||||||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
28696244 |
caccttggcatcttgttgatgaaatctacaagttcctttgatcatctcatccaaaatttgtgttggaattccatgatttattacttgaaagaatccccaa |
28696343 |
T |
|
| Q |
218 |
ttctcacttgcattttgaacttttctcacaacttcatct |
256 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
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| T |
28696344 |
ttctcacttgcattttgaacttttctcacaacttcatct |
28696382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 18 - 257
Target Start/End: Original strand, 28691259 - 28691498
Alignment:
| Q |
18 |
caagtgtgtccctccaatcagcagattggtcttggtaaagagtaaaattggaaagataaacaacttttttggtgagatcacgggtgtagtactccttcct |
117 |
Q |
| |
|
|||||| ||||||||||| ||||| | || ||||||||| || |||| |||| ||||||||||| ||| | ||||||| ||||| ||||| ||||| |
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| T |
28691259 |
caagtgagtccctccaattagcagcaggatcatggtaaagactataattagaaacgtaaacaactttcttgttaggatcacgtgtgtaatactctttcct |
28691358 |
T |
|
| Q |
118 |
caccttggcatcttgttggtgaaatctacaagttccattgatcatgtcatccaaaatatgtgttggaattccatgatttattacttgaaagaatccccat |
217 |
Q |
| |
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||| | |||||||||| ||||||||||||||||| |||||||| |||||||||| ||| | || ||||||||||||||||||||||||||||||||| |
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| T |
28691359 |
taccataacatcttgttgatgaaatctacaagttcctttgatcatctcatccaaaacatgagctgaaattccatgatttattacttgaaagaatccccac |
28691458 |
T |
|
| Q |
218 |
ttctcacttgcattttgaacttttctcacaacttcatctc |
257 |
Q |
| |
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||||||| |||||||| ||||||||||||| ||||||||| |
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| T |
28691459 |
ttctcacatgcattttcaacttttctcacagcttcatctc |
28691498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 63 - 207
Target Start/End: Original strand, 28717507 - 28717651
Alignment:
| Q |
63 |
aattggaaagataaacaacttttttggtgagatcacgggtgtagtactccttcctcaccttggcatcttgttggtgaaatctacaagttccattgatcat |
162 |
Q |
| |
|
|||| |||| |||||||||||| ||| | |||||| |||| ||||| ||||| ||| | |||||||||| ||||||||||||||||| |||||||| |
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| T |
28717507 |
aattagaaatataaacaactttcttgttaggatcacatatgtaatactctttccttaccctaacatcttgttgatgaaatctacaagttcctttgatcat |
28717606 |
T |
|
| Q |
163 |
gtcatccaaaatatgtgttggaattccatgatttattacttgaaa |
207 |
Q |
| |
|
|||||||||| ||| |||| |||||||||||||||||||||||| |
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| T |
28717607 |
ctcatccaaaacatgagttgaaattccatgatttattacttgaaa |
28717651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 125 - 221
Target Start/End: Complemental strand, 41238565 - 41238469
Alignment:
| Q |
125 |
gcatcttgttggtgaaatctacaagttccattgatcatgtcatccaaaatatgtgttggaattccatgatttattacttgaaagaatccccatttct |
221 |
Q |
| |
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|||||||||| |||||||||||| ||||||||||||| |||||||||| ||| |||||| |||||||| || ||||| || |||||||| |||| |
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| T |
41238565 |
gcatcttgttcatgaaatctacaaattccattgatcatctcatccaaaacatgaagtggaataccatgattgatcacttggaaaaatccccagttct |
41238469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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