View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19078_high_3 (Length: 298)
Name: NF19078_high_3
Description: NF19078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19078_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 135; Significance: 2e-70; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 106 - 284
Target Start/End: Complemental strand, 6174026 - 6173848
Alignment:
| Q |
106 |
cttgaaaaagaccctttggcaatcatggaaaaactcttatctggtgaacttggtcattcttcacaggcttctcaatctacactacaagcagaaggcactg |
205 |
Q |
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| T |
6174026 |
cttgaagaagaccctttggcaatcatggaaaaactcttatctggtgaacttggtcattcttcacaggcttctcaatctacgccacaagctgaagctactg |
6173927 |
T |
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| Q |
206 |
aaactcagagtgagtcaatcaagatgctgcttgatgaattaagggagttggcattttcaagaaatctattgaaacattt |
284 |
Q |
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| T |
6173926 |
aaactcagagtgagtcaatcaagatgctgctggatgaattaagggatttggtattttcaagaaacttattgaaacattt |
6173848 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 106 - 284
Target Start/End: Complemental strand, 6135965 - 6135793
Alignment:
| Q |
106 |
cttgaaaaagaccctttggcaatcatggaaaaactcttatctggtgaacttggtcattcttcacaggcttctcaatctacactacaagcagaaggcactg |
205 |
Q |
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| T |
6135965 |
cttgaagaagaccctttggcaatcatggacaaactcttatctggtgaacttggtcattcttcacagactcctcaatctacagaacaagcagaagctactg |
6135866 |
T |
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| Q |
206 |
aaactcagagtgagtcaatcaagatgctgcttgatgaattaagggagttggcattttcaagaaatctattgaaacattt |
284 |
Q |
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| T |
6135865 |
aaactgagagt------atcaaaacgctgcttgatgaattgagggagttggcattttcaagaaacttattgaaacattt |
6135793 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 6174385 - 6174300
Alignment:
| Q |
1 |
caaaagttttcctgtgatgatgatttacacccttctattgctccgacaagattaaattcaacaaacatgtcgaagacagatgaggt |
86 |
Q |
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| T |
6174385 |
caaaagttttccagtgatgatgatttacactcttctatttctccgacaagattaaattcaacagacaggtcgaagacagatgaggt |
6174300 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 14 - 86
Target Start/End: Complemental strand, 6136317 - 6136245
Alignment:
| Q |
14 |
gtgatgatgatttacacccttctattgctccgacaagattaaattcaacaaacatgtcgaagacagatgaggt |
86 |
Q |
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| T |
6136317 |
gtgatgatgaattgcacccttctatttctccaacaagattaaattcagcaaacaagtcgaagacagatgaggt |
6136245 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 15 - 86
Target Start/End: Original strand, 6119155 - 6119226
Alignment:
| Q |
15 |
tgatgatgatttacacccttctattgctccgacaagattaaattcaacaaacatgtcgaagacagatgaggt |
86 |
Q |
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| T |
6119155 |
tgattatgaattacactcttctatttctccaacaagattaaattcagcagacaattcgaagacagatgaggt |
6119226 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 62; Significance: 8e-27; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 223 - 284
Target Start/End: Complemental strand, 37616578 - 37616517
Alignment:
| Q |
223 |
atcaagatgctgcttgatgaattaagggagttggcattttcaagaaatctattgaaacattt |
284 |
Q |
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| T |
37616578 |
atcaagatgctgcttgatgaattaagggagttggcattttcaagaaatctattgaaacattt |
37616517 |
T |
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