View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19078_low_1 (Length: 688)
Name: NF19078_low_1
Description: NF19078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19078_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 435; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 4 - 631
Target Start/End: Original strand, 13885353 - 13885959
Alignment:
| Q |
4 |
cggcgtttgttgtttacaaatgaaagattcctcagaatcttcaacaatttcattatcttctacatgtttcgctggtatcagagatcgttgggaatcacct |
103 |
Q |
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| T |
13885353 |
cggcgtttgttgtttacaactgaaagattcctcagaatcttcaacaatttcattatcttctacatgttttgctgggatccgagattgttgggaatcaccc |
13885452 |
T |
|
| Q |
104 |
tgtgaattttcaatgtcacctttgccgaacagtattgaatcagtgagaattggtggcgaaacagaagatggttgagaaacttcgacaatgtcgcgaactt |
203 |
Q |
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| T |
13885453 |
tgtgaattttcaatg---------ccgagcagtattgattcaatgagaattgccgttgaaacagaagatggttgagaaacttcgacaatgtcgtgaactt |
13885543 |
T |
|
| Q |
204 |
cctcttcatgttcctccgatagtgggacttatgtgttgttggcaggtggtatgttagacctatttgatgacaattccttcttgtactctttttcaaaacg |
303 |
Q |
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| T |
13885544 |
cctcttcacattcctccgatagtgagactt------------caggtggtatgttagacctatttgatgacaattccttcttgtactctttttcaaaacg |
13885631 |
T |
|
| Q |
304 |
agatgttttgatattgctatgaatatcagaattaatatatggagagcttggtgttgaattgtcagttatgccataaatgctagaaagggatgttgccgat |
403 |
Q |
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| T |
13885632 |
agatgttttgatattgctacgaatatcagaattaatatatggagaacttggggctgaattgtctgttatgccataaatgctagagagggatgttgtcgat |
13885731 |
T |
|
| Q |
404 |
gaataaaagtcagatttatatgtgaagccatcagaaaaacacggttctaaaagtgaaaaagcaggacttgcacatacgctatgaacctgagtaaattgag |
503 |
Q |
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| T |
13885732 |
gaataaaagtcagatttatatgtcaagccatcagaaaaacacggttctgaaagtgaaaaagcaggacttgcacatacgctacgaacctgagtaaattgag |
13885831 |
T |
|
| Q |
504 |
aggtgtcatctgagtttttattattctcgttgattttagttacaacagcaacttctttcatctttgaaaaactcgaatcatcgataattcgattttttcc |
603 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| |
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| T |
13885832 |
aggtgtcatctgagtttttattattctcgttgattttagttacaacagcaacttctttcatctttgaaaaactcgaatcattgataattcgattatttcc |
13885931 |
T |
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| Q |
604 |
ctcatgaaccctaattcgttcacatctc |
631 |
Q |
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| T |
13885932 |
ctcatgaaccctaattggttcacatctc |
13885959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 588 - 633
Target Start/End: Original strand, 1220153 - 1220198
Alignment:
| Q |
588 |
taattcgattttttccctcatgaaccctaattcgttcacatctcct |
633 |
Q |
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| T |
1220153 |
taattcgattgtttccgtcatgaaacctaattggttcacatctcct |
1220198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 124; Significance: 2e-63; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 244 - 491
Target Start/End: Complemental strand, 29092162 - 29091915
Alignment:
| Q |
244 |
ggcaggtggtatgttagacctatttgatgacaattccttcttgtactctttttcaaaacgagatgttttgatattgctatgaatatcagaattaatatat |
343 |
Q |
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|||||| || ||| |||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | |||||||||| |
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| T |
29092162 |
ggcaggaggcatgatagatctatttgatgacaattccttcttgtactctttttcgaaacgagatgttttgatattgctatgaatatctggattaatatat |
29092063 |
T |
|
| Q |
344 |
ggagagcttggtgttgaattgtcagttatgccataaatgctagaaagggatgttgccgatgaataaaagtcagatttatatgtgaagccatcagaaaaac |
443 |
Q |
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| T |
29092062 |
ggagaacttgggactgaattgtctgtcatgccatgaatgctggagagggacgacactgatgaataaaattcagatttatatgacaagccgtcagaaaaac |
29091963 |
T |
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| Q |
444 |
acggttctaaaagtgaaaaagcaggacttgcacatacgctatgaacct |
491 |
Q |
| |
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|| ||||| ||||||| |||| |||||||||||| |||||||| |||| |
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| T |
29091962 |
accgttctgaaagtgacaaagtaggacttgcacacacgctatgtacct |
29091915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 588 - 631
Target Start/End: Complemental strand, 31913691 - 31913648
Alignment:
| Q |
588 |
taattcgattttttccctcatgaaccctaattcgttcacatctc |
631 |
Q |
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|||||||||| ||||| ||||||||||||||| ||||||||||| |
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| T |
31913691 |
taattcgattgtttccatcatgaaccctaattggttcacatctc |
31913648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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