View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19078_low_2 (Length: 458)

Name: NF19078_low_2
Description: NF19078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19078_low_2
NF19078_low_2
[»] chr6 (2 HSPs)
chr6 (17-447)||(13551917-13552349)
chr6 (411-447)||(24062042-24062078)
[»] chr7 (3 HSPs)
chr7 (365-414)||(12597074-12597123)
chr7 (413-447)||(45022682-45022716)
chr7 (411-447)||(11321502-11321538)
[»] chr8 (3 HSPs)
chr8 (413-447)||(38804895-38804929)
chr8 (418-447)||(32889137-32889166)
chr8 (411-447)||(32889011-32889047)
[»] chr4 (6 HSPs)
chr4 (409-447)||(11974899-11974937)
chr4 (412-445)||(27866450-27866483)
chr4 (411-447)||(3729297-3729333)
chr4 (411-447)||(11333060-11333096)
chr4 (411-447)||(37144065-37144101)
chr4 (411-447)||(38001256-38001292)
[»] chr3 (5 HSPs)
chr3 (413-447)||(28096097-28096131)
chr3 (418-447)||(22102179-22102208)
chr3 (411-447)||(3422862-3422898)
chr3 (411-447)||(7116198-7116234)
chr3 (411-447)||(42897087-42897123)
[»] chr5 (1 HSPs)
chr5 (411-447)||(38938824-38938860)
[»] chr1 (1 HSPs)
chr1 (411-447)||(8007192-8007228)


Alignment Details
Target: chr6 (Bit Score: 386; Significance: 0; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 17 - 447
Target Start/End: Original strand, 13551917 - 13552349
Alignment:
Q  17 atcttccagcctaaattttcaactacttgttaacctctatcaaagaaggaatgaaggaaagaagaatgttacttatgcatggtttctttcaaaaatcttt 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13551917 atcttccagcctaaattttcaactacttgttaacctctatcaaagaaggaatgaaggaaagaagaatgttacttatgcatggtttctttcaaaaatcttt 13552016  T
Q  117 caccaaggaaagctggttcagaagctacaacatgttgtatcgagtgactctagggaatataggcatcatccagaaaggatatgtaattacaactgatcaa 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13552017 caccaaggaaagctggttcagaagctacaacatgttgtatcgagtgactctagggaatataggcatcatccagaaaggatatgtaattacaactgatcaa 13552116  T
Q  217 gagctagagataacctatgctcagactgcatacttggatgatttcccctattttaaaagaagaccctccaaaagtcttggctgagttcgtctcccaacat 316  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| ||||||||||||||||||||||||    
T  13552117 gacctagagataacctatgctcagactgcatacttggatgatttcccctatttcaaaagaagaccctccagaagtgttggctgagttcgtctcccaacat 13552216  T
Q  317 ttcaaggagactggagttgta--attcaatggatatgacccctatttcataatgaatctgcaatctagcaagctgatatggcaaggactcaagctgatat 414  Q
    |||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13552217 ttcaaggagactggagttgtaatattcaatggatatgacccctatttcataatgaatctgcaatctagcaagctgatatggcaaggactcaagctgatat 13552316  T
Q  415 ctctactatatataaagaaaactatccctttca 447  Q
    ||||| ||||  |||||||||||| || |||||    
T  13552317 ctctattataggtaaagaaaactacccttttca 13552349  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 411 - 447
Target Start/End: Original strand, 24062042 - 24062078
Alignment:
Q  411 atatctctactatatataaagaaaactatccctttca 447  Q
    |||||| ||||||||||||||||||||||||||||||    
T  24062042 atatctatactatatataaagaaaactatccctttca 24062078  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000007; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 365 - 414
Target Start/End: Original strand, 12597074 - 12597123
Alignment:
Q  365 aatgaatctgcaatctagcaagctgatatggcaaggactcaagctgatat 414  Q
    ||||||||||||||| ||||| || ||||||||||||| |||||||||||    
T  12597074 aatgaatctgcaatccagcaaactaatatggcaaggacccaagctgatat 12597123  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 413 - 447
Target Start/End: Complemental strand, 45022716 - 45022682
Alignment:
Q  413 atctctactatatataaagaaaactatccctttca 447  Q
    |||| ||||||||||||||||||||||||||||||    
T  45022716 atctatactatatataaagaaaactatccctttca 45022682  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 411 - 447
Target Start/End: Complemental strand, 11321538 - 11321502
Alignment:
Q  411 atatctctactatatataaagaaaactatccctttca 447  Q
    |||||| ||||||||||||||||||||| ||||||||    
T  11321538 atatctatactatatataaagaaaactacccctttca 11321502  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 413 - 447
Target Start/End: Complemental strand, 38804929 - 38804895
Alignment:
Q  413 atctctactatatataaagaaaactatccctttca 447  Q
    |||| ||||||||||||||||||||||||||||||    
T  38804929 atctatactatatataaagaaaactatccctttca 38804895  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 418 - 447
Target Start/End: Original strand, 32889137 - 32889166
Alignment:
Q  418 tactatatataaagaaaactatccctttca 447  Q
    ||||||||||||||||||||||||||||||    
T  32889137 tactatatataaagaaaactatccctttca 32889166  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 411 - 447
Target Start/End: Original strand, 32889011 - 32889047
Alignment:
Q  411 atatctctactatatataaagaaaactatccctttca 447  Q
    |||||| ||||||| ||||||||||||||||||||||    
T  32889011 atatctatactatagataaagaaaactatccctttca 32889047  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 409 - 447
Target Start/End: Complemental strand, 11974937 - 11974899
Alignment:
Q  409 tgatatctctactatatataaagaaaactatccctttca 447  Q
    |||||||| ||||||||||||||||||||| ||||||||    
T  11974937 tgatatctatactatatataaagaaaactacccctttca 11974899  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 412 - 445
Target Start/End: Complemental strand, 27866483 - 27866450
Alignment:
Q  412 tatctctactatatataaagaaaactatcccttt 445  Q
    ||||| ||||||||||||||||||||||||||||    
T  27866483 tatctatactatatataaagaaaactatcccttt 27866450  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 411 - 447
Target Start/End: Original strand, 3729297 - 3729333
Alignment:
Q  411 atatctctactatatataaagaaaactatccctttca 447  Q
    |||||| |||||||||||||||||||||||| |||||    
T  3729297 atatctatactatatataaagaaaactatccatttca 3729333  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 411 - 447
Target Start/End: Original strand, 11333060 - 11333096
Alignment:
Q  411 atatctctactatatataaagaaaactatccctttca 447  Q
    |||||| ||||||||||||||||||||| ||||||||    
T  11333060 atatctatactatatataaagaaaactacccctttca 11333096  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 411 - 447
Target Start/End: Complemental strand, 37144101 - 37144065
Alignment:
Q  411 atatctctactatatataaagaaaactatccctttca 447  Q
    |||||| ||||||||||||||||||||| ||||||||    
T  37144101 atatctatactatatataaagaaaactacccctttca 37144065  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 411 - 447
Target Start/End: Original strand, 38001256 - 38001292
Alignment:
Q  411 atatctctactatatataaagaaaactatccctttca 447  Q
    |||||| |||||||||||||||||||| |||||||||    
T  38001256 atatctatactatatataaagaaaactgtccctttca 38001292  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 413 - 447
Target Start/End: Original strand, 28096097 - 28096131
Alignment:
Q  413 atctctactatatataaagaaaactatccctttca 447  Q
    |||| ||||||||||||||||||||||||||||||    
T  28096097 atctatactatatataaagaaaactatccctttca 28096131  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 418 - 447
Target Start/End: Original strand, 22102179 - 22102208
Alignment:
Q  418 tactatatataaagaaaactatccctttca 447  Q
    ||||||||||||||||||||||||||||||    
T  22102179 tactatatataaagaaaactatccctttca 22102208  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 411 - 447
Target Start/End: Complemental strand, 3422898 - 3422862
Alignment:
Q  411 atatctctactatatataaagaaaactatccctttca 447  Q
    |||||| |||||||||||||||||||| |||||||||    
T  3422898 atatctatactatatataaagaaaactgtccctttca 3422862  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 411 - 447
Target Start/End: Complemental strand, 7116234 - 7116198
Alignment:
Q  411 atatctctactatatataaagaaaactatccctttca 447  Q
    |||||| ||||||||||||||||||||| ||||||||    
T  7116234 atatctatactatatataaagaaaactacccctttca 7116198  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 411 - 447
Target Start/End: Complemental strand, 42897123 - 42897087
Alignment:
Q  411 atatctctactatatataaagaaaactatccctttca 447  Q
    |||||| ||||||||||||||||||||| ||||||||    
T  42897123 atatctatactatatataaagaaaactacccctttca 42897087  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 411 - 447
Target Start/End: Complemental strand, 38938860 - 38938824
Alignment:
Q  411 atatctctactatatataaagaaaactatccctttca 447  Q
    |||||| ||||||||||||||||||||| ||||||||    
T  38938860 atatctatactatatataaagaaaactacccctttca 38938824  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 411 - 447
Target Start/End: Original strand, 8007192 - 8007228
Alignment:
Q  411 atatctctactatatataaagaaaactatccctttca 447  Q
    |||||| ||||||| ||||||||||||||||||||||    
T  8007192 atatctatactatacataaagaaaactatccctttca 8007228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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