View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19078_low_3 (Length: 391)
Name: NF19078_low_3
Description: NF19078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19078_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 185; Significance: 1e-100; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 15 - 255
Target Start/End: Complemental strand, 34697312 - 34697071
Alignment:
| Q |
15 |
catcaaccaaatgaagccatgaacattgcacacgtccatgagatattatagaacataaccataccccgtgcgt-acattctgggtgtgcgcacacgcgcc |
113 |
Q |
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| T |
34697312 |
catcaaccaaatgaagccatgaacattgcacacgtccatgagatattatagaacataaccataccccgtgctttaaattctgggtgtgcgcacgggcgcc |
34697213 |
T |
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| Q |
114 |
cacacaaacacatgtaaatattgatatatattatgtccaaaccttctgttttttaagaagggactataggaaatttagagtttgacacataagtaaagtt |
213 |
Q |
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| T |
34697212 |
cacacaaacacatgtaaatattgatatatattttgtccaaaccttctgttttttaagaagggactataggtaatttagagtttgacacataagtaaagtt |
34697113 |
T |
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| Q |
214 |
tgatnnnnnnnttgttcaaactaggatttaaatcagtttgtt |
255 |
Q |
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| T |
34697112 |
tgataaaaaaattgttaaaactaggatttaaatcagtttgtt |
34697071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 253 - 391
Target Start/End: Complemental strand, 34695344 - 34695206
Alignment:
| Q |
253 |
gttttcaaatattcatctttaattgaaattatttaccacttaagttcaatcactttataaaaatgaatatttattaccttgaaattgatcaccagtaaag |
352 |
Q |
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| T |
34695344 |
gttttcaaatattcatctttaattgaaattatttaccacttaagttcaatcactttataaaaattaatatttattaccttgaaattgatcaccagtaaag |
34695245 |
T |
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| Q |
353 |
aggaatggaatatcagcaggtgcactcatgtcaatggcc |
391 |
Q |
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| T |
34695244 |
aggaatggaatatcagcaggtgcactcatgtcaatggcc |
34695206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 327 - 391
Target Start/End: Complemental strand, 34687341 - 34687277
Alignment:
| Q |
327 |
taccttgaaattgatcaccagtaaagaggaatggaatatcagcaggtgcactcatgtcaatggcc |
391 |
Q |
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| T |
34687341 |
taccttgaagttgatcaccggtaaaaaggaatggaacatcaacaggtgcactcatgtcaatggcc |
34687277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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