View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19079_low_1 (Length: 600)

Name: NF19079_low_1
Description: NF19079
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19079_low_1
NF19079_low_1
[»] chr7 (24 HSPs)
chr7 (17-219)||(30947453-30947655)
chr7 (17-216)||(26279783-26279982)
chr7 (17-222)||(19928231-19928425)
chr7 (17-216)||(40819880-40820069)
chr7 (17-216)||(37245254-37245443)
chr7 (17-138)||(25443577-25443699)
chr7 (151-216)||(25443519-25443584)
chr7 (60-148)||(15043269-15043357)
chr7 (141-216)||(22205394-22205469)
chr7 (141-216)||(22229270-22229345)
chr7 (217-264)||(24887565-24887612)
chr7 (60-146)||(37245213-37245302)
chr7 (60-146)||(30947607-30947695)
chr7 (60-146)||(40819841-40819928)
chr7 (61-138)||(25443659-25443737)
chr7 (17-63)||(45280729-45280775)
chr7 (87-148)||(22205351-22205411)
chr7 (62-138)||(36630400-36630476)
chr7 (60-144)||(45280729-45280816)
chr7 (17-65)||(15043307-15043355)
chr7 (17-65)||(36630392-36630440)
chr7 (68-146)||(19928198-19928279)
chr7 (19-65)||(22205363-22205409)
chr7 (19-65)||(22229330-22229376)
[»] chr2 (9 HSPs)
chr2 (17-218)||(14811173-14811374)
chr2 (60-218)||(14314405-14314563)
chr2 (151-216)||(32751109-32751174)
chr2 (151-206)||(27709937-27709992)
chr2 (86-196)||(13043932-13044042)
chr2 (17-65)||(14314443-14314491)
chr2 (60-146)||(14811326-14811415)
chr2 (60-148)||(14314332-14314423)
chr2 (17-55)||(14314372-14314410)
[»] chr1 (6 HSPs)
chr1 (17-213)||(46398072-46398268)
chr1 (68-146)||(22150678-22150756)
chr1 (60-136)||(33368779-33368854)
chr1 (143-213)||(29096170-29096240)
chr1 (60-146)||(46398031-46398120)
chr1 (19-65)||(29096227-29096273)
[»] chr8 (24 HSPs)
chr8 (17-213)||(17068098-17068294)
chr8 (17-213)||(17580063-17580259)
chr8 (17-216)||(29054462-29054660)
chr8 (17-216)||(10861763-10861952)
chr8 (41-216)||(17631155-17631317)
chr8 (17-148)||(34964717-34964844)
chr8 (71-216)||(20289270-20289405)
chr8 (71-216)||(21075900-21076035)
chr8 (17-146)||(17579979-17580111)
chr8 (126-217)||(10786846-10786937)
chr8 (17-57)||(20289398-20289438)
chr8 (17-57)||(21076028-21076068)
chr8 (60-146)||(10861723-10861811)
chr8 (117-205)||(17048185-17048274)
chr8 (61-146)||(3046799-3046884)
chr8 (17-65)||(3046836-3046884)
chr8 (60-138)||(20289398-20289479)
chr8 (60-138)||(21076028-21076109)
chr8 (60-146)||(29054612-29054701)
chr8 (63-146)||(17068246-17068332)
chr8 (63-146)||(17579941-17580027)
chr8 (17-65)||(17631212-17631260)
chr8 (17-65)||(20289330-20289378)
chr8 (17-65)||(21075960-21076008)
[»] scaffold0017 (2 HSPs)
scaffold0017 (17-213)||(38029-38225)
scaffold0017 (60-146)||(37989-38077)
[»] chr3 (18 HSPs)
chr3 (17-217)||(4533370-4533569)
chr3 (17-216)||(39674088-39674277)
chr3 (17-216)||(39579803-39579992)
chr3 (17-216)||(53330671-53330860)
chr3 (17-216)||(53334355-53334544)
chr3 (17-216)||(53338032-53338221)
chr3 (17-216)||(25041248-25041436)
chr3 (17-138)||(958813-958934)
chr3 (60-216)||(42864250-42864409)
chr3 (126-216)||(53363109-53363199)
chr3 (153-204)||(41530477-41530528)
chr3 (152-213)||(27391352-27391413)
chr3 (60-146)||(39579944-39580032)
chr3 (17-64)||(42864321-42864368)
chr3 (142-203)||(24645638-24645699)
chr3 (153-206)||(29359669-29359722)
chr3 (60-146)||(958886-958974)
chr3 (60-146)||(39674229-39674318)
[»] chr6 (6 HSPs)
chr6 (17-206)||(11382424-11382613)
chr6 (41-220)||(21111995-21112174)
chr6 (17-216)||(8861950-8862128)
chr6 (60-146)||(11382565-11382654)
chr6 (68-170)||(5013400-5013502)
chr6 (17-65)||(21112069-21112117)
[»] chr5 (6 HSPs)
chr5 (17-197)||(36606105-36606275)
chr5 (60-216)||(6665622-6665776)
chr5 (17-76)||(8871283-8871342)
chr5 (60-143)||(8871297-8871383)
chr5 (18-65)||(6665692-6665739)
chr5 (60-107)||(32658910-32658957)
[»] chr4 (5 HSPs)
chr4 (41-148)||(54260103-54260211)
chr4 (151-206)||(32760428-32760483)
chr4 (143-216)||(563342-563415)
chr4 (68-138)||(26261055-26261125)
chr4 (17-58)||(26261054-26261095)
[»] scaffold0037 (1 HSPs)
scaffold0037 (117-205)||(4403-4492)
[»] scaffold0274 (2 HSPs)
scaffold0274 (23-65)||(14400-14442)
scaffold0274 (141-202)||(14427-14488)


Alignment Details
Target: chr7 (Bit Score: 155; Significance: 5e-82; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 155; E-Value: 5e-82
Query Start/End: Original strand, 17 - 219
Target Start/End: Complemental strand, 30947655 - 30947453
Alignment:
Q  17 taaatattaactgtccgatacttctccgatacgcgtatcgggacgtatccgacacgtatcggtcattgtttttcaaataaataaatattaattgactgag 116  Q
    |||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||| | ||     
T  30947655 taaatattaattgtctgatacttctccgatacgcgtatcgggacgtatccgacacgtatcagtcattgtttttcaaaaaaataaatattaattgcccgat 30947556  T
Q  117 acttttccgatacccgtatcggaacgtatcggagcgtatcggtatcggatacgtgtcggatacgatacttcaccatttttgaagtatcggagcttcagag 216  Q
    |||||| ||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| |||||||||    
T  30947555 actttttcgatacccgtatcggaacgtatcggggcgtatcggtatcgaatacgtgtcggatacgatacttcaccatttttgtagtatcggggcttcagag 30947456  T
Q  217 att 219  Q
    |||    
T  30947455 att 30947453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 140; E-Value: 5e-73
Query Start/End: Original strand, 17 - 216
Target Start/End: Original strand, 26279783 - 26279982
Alignment:
Q  17 taaatattaactgtccgatacttctccgatacgcgtatcgggacgtatccgacacgtatcggtcattgtttttcaaataaataaatattaattgactgag 116  Q
    ||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||| | ||     
T  26279783 taaatattaacttcccgatacttctccgatacgcgtatcgggacgtatccgacacgtatcagtcattgtttttcaaaaaaataaatattaattgcccgat 26279882  T
Q  117 acttttccgatacccgtatcggaacgtatcggagcgtatcggtatcggatacgtgtcggatacgatacttcaccatttttgaagtatcggagcttcagag 216  Q
    |||||||||||||  ||||||| |||||||||||| |||||||||| |||||||||||||||||||||||||||||||||  |||||||| |||||||||    
T  26279883 acttttccgatacgtgtatcgggacgtatcggagcatatcggtatctgatacgtgtcggatacgatacttcaccatttttagagtatcggggcttcagag 26279982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 17 - 222
Target Start/End: Original strand, 19928231 - 19928425
Alignment:
Q  17 taaatattaactgtccgatacttctccgatacgcgtatcgggacgtatccgacacgtatcggtcattgtttttcaaataaataaatattaattgactgag 116  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||          
T  19928231 taaatattaactgtctgatacttctccgatacgcgtatcgggacgtatccgacacgtatcggtcattgtttttcaaaaaaataaatattaattg------ 19928324  T
Q  117 acttttccgatacccgtatcggaacgtatcggagcgtatcggtatcggatacgtgtcggatacgatacttcaccatttttgaagtatcggagcttcagag 216  Q
          |||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| ||||    
T  19928325 -----cccgatacccgtatcgggatgtatcggagcgtatcggtatcggatacgtgtcggatacgatacttcaccatttttggagtatcggggctttagag 19928419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 17 - 216
Target Start/End: Original strand, 40819880 - 40820069
Alignment:
Q  17 taaatattaactgtccgatacttctccgatacgcgtatcgggacgtatccgacacgtatcggtcattgtttttcaaataaataaatattaattgactgag 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||  | ||     
T  40819880 taaatattaactgtccgatacttctccgatacgcgtatcgggacgtatccgacacgtatcggtcattgtttttcaaaaaaataaatattaatttcccgat 40819979  T
Q  117 acttttccgatacccgtatcggaacgtatcggagcgtatcggtatcggatacgtgtcggatacgatacttcaccatttttgaagtatcggagcttcagag 216  Q
    |||||||||||||||||||||| |          ||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| |||| ||||    
T  40819980 acttttccgatacccgtatcggga----------cgtatcggtatcgcatacgtgtcggatacgatacttcaccatttttggagtatcggggctttagag 40820069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 17 - 216
Target Start/End: Original strand, 37245254 - 37245443
Alignment:
Q  17 taaatattaactgtccgatacttctccgatacgcgtatcgggacgtatccgacacgtatcggtcattgtttttcaaataaataaatattaattgactgag 116  Q
    |||||||||| |||| ||||||| |||||||||||||||| |||||||| ||||||||||||||||||||||||||| ||||||| |||||||| | ||     
T  37245254 taaatattaattgtctgatacttttccgatacgcgtatcgcgacgtatctgacacgtatcggtcattgtttttcaaaaaaataaacattaattgcccgat 37245353  T
Q  117 acttttccgatacccgtatcggaacgtatcggagcgtatcggtatcggatacgtgtcggatacgatacttcaccatttttgaagtatcggagcttcagag 216  Q
    |||||||||||||||||||| | |          |||||||||||| |||||||||||||||||||||||||||||||||| |||||||| |||||||||    
T  37245354 acttttccgatacccgtatcagga----------cgtatcggtatcagatacgtgtcggatacgatacttcaccatttttggagtatcggggcttcagag 37245443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 17 - 138
Target Start/End: Complemental strand, 25443699 - 25443577
Alignment:
Q  17 taaatattaactgtccgatacttctccgatacgcgtatcgggacgtatccgacacgtatcggtcattgtttttc-aaataaataaatattaattgactga 115  Q
    |||||||||| |||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| | ||| ||||||||||||||||   ||    
T  25443699 taaatattaattgtccgatacttctccgatacgcgtatcgggatgtatctgacacgtatcggtcattgttttacaaaaaaaataaatattaattgctcga 25443600  T
Q  116 gacttttccgatacccgtatcgg 138  Q
     ||||||||||||||||||||||    
T  25443599 tacttttccgatacccgtatcgg 25443577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 151 - 216
Target Start/End: Complemental strand, 25443584 - 25443519
Alignment:
Q  151 cgtatcggtatcggatacgtgtcggatacgatacttcaccatttttgaagtatcggagcttcagag 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||  |||||| | |||||||||    
T  25443584 cgtatcggtatcggatacgtgtcggatacgatacttcaccattttttgagtatcagggcttcagag 25443519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 60 - 148
Target Start/End: Original strand, 15043269 - 15043357
Alignment:
Q  60 cgtatccgacacgtatcggtcattgtttttcaaataaataaatattaattgactgagacttttccgatacccgtatcggaacgtatcgg 148  Q
    |||||||||||| ||||||||||| ||||||||| |||||||||||||||| | || ||||  ||||||| |||||||| |||||||||    
T  15043269 cgtatccgacacatatcggtcattttttttcaaaaaaataaatattaattggccgatacttcaccgatacacgtatcgggacgtatcgg 15043357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 141 - 216
Target Start/End: Original strand, 22205394 - 22205469
Alignment:
Q  141 cgtatcggagcgtatcggtatcggatacgtgtcggatacgatacttcaccatttttgaagtatcggagcttcagag 216  Q
    ||||||||| |||||||||||||||||||| ||||| ||||| |||||||||||||| |||||||| |||| ||||    
T  22205394 cgtatcggaacgtatcggtatcggatacgtatcggacacgattcttcaccatttttggagtatcggggctttagag 22205469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 141 - 216
Target Start/End: Complemental strand, 22229345 - 22229270
Alignment:
Q  141 cgtatcggagcgtatcggtatcggatacgtgtcggatacgatacttcaccatttttgaagtatcggagcttcagag 216  Q
    ||||||||| |||||||||||||||||||| ||||| ||||| |||||||||||||| |||||||| |||| ||||    
T  22229345 cgtatcggaacgtatcggtatcggatacgtatcggacacgattcttcaccatttttggagtatcggggctttagag 22229270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 217 - 264
Target Start/End: Complemental strand, 24887612 - 24887565
Alignment:
Q  217 attcacctccccaaaaatctattaaaatgtaatcacatacttctattt 264  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  24887612 attcacctccccaaaaatctattaaaatgtaatcacatacttctattt 24887565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 60 - 146
Target Start/End: Original strand, 37245213 - 37245302
Alignment:
Q  60 cgtatccgacacgtatcggtcattgtttttca---aataaataaatattaattgactgagacttttccgatacccgtatcggaacgtatc 146  Q
    |||||||||||||||||||||||| ||||||    || |||||||||||||||| |||| ||||||||||||| |||||||  |||||||    
T  37245213 cgtatccgacacgtatcggtcattttttttccttcaaaaaataaatattaattgtctgatacttttccgatacgcgtatcgcgacgtatc 37245302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 60 - 146
Target Start/End: Complemental strand, 30947695 - 30947607
Alignment:
Q  60 cgtatccgacacgtatcggtcattgtttt---tcaaataaataaatattaattgactgagacttttccgatacccgtatcggaacgtatc 146  Q
    ||||||||||||||||| |||||| ||||   ||||| |||||||||||||||| |||| |||| |||||||| |||||||| |||||||    
T  30947695 cgtatccgacacgtatcagtcatttttttccttcaaa-aaataaatattaattgtctgatacttctccgatacgcgtatcgggacgtatc 30947607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 60 - 146
Target Start/End: Original strand, 40819841 - 40819928
Alignment:
Q  60 cgtatccgacacgtatcggtcattgttt--ttcaaataaataaatattaattgactgagacttttccgatacccgtatcggaacgtatc 146  Q
    |||||||||||||||||||||||| |||  |||||| ||||||||||||| || | || |||| |||||||| |||||||| |||||||    
T  40819841 cgtatccgacacgtatcggtcatttttttcttcaaa-aaataaatattaactgtccgatacttctccgatacgcgtatcgggacgtatc 40819928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 61 - 138
Target Start/End: Complemental strand, 25443737 - 25443659
Alignment:
Q  61 gtatccgacacgtatcggtcattgttt--ttcaaataaataaatattaattgactgagacttttccgatacccgtatcgg 138  Q
    ||||||||||||||||||||||| |||  |||||| |||||||||||||||| | || |||| |||||||| ||||||||    
T  25443737 gtatccgacacgtatcggtcattttttccttcaaa-aaataaatattaattgtccgatacttctccgatacgcgtatcgg 25443659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 17 - 63
Target Start/End: Complemental strand, 45280775 - 45280729
Alignment:
Q  17 taaatattaactgtccgatacttctccgatacgcgtatcgggacgta 63  Q
    |||||||||| || ||||||||||||| |||||||||||||||||||    
T  45280775 taaatattaattgaccgatacttctccaatacgcgtatcgggacgta 45280729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 87 - 148
Target Start/End: Original strand, 22205351 - 22205411
Alignment:
Q  87 tttcaaataaataaatattaattgactgagacttttccgatacccgtatcggaacgtatcgg 148  Q
    ||||||| |||||| ||||||||| | || ||||||||||||| ||||||||||||||||||    
T  22205351 tttcaaaaaaataa-tattaattgcccgatacttttccgatacgcgtatcggaacgtatcgg 22205411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 62 - 138
Target Start/End: Complemental strand, 36630476 - 36630400
Alignment:
Q  62 tatccgacacgtatcggtcattgtttttca-aataaataaatattaattgactgagacttttccgatacccgtatcgg 138  Q
    ||||||||||||||| |||||| ||||||| || |||||||||||||||| | || |||| |||||||| ||||||||    
T  36630476 tatccgacacgtatcagtcatt-tttttcataaaaaataaatattaattgtcagatacttctccgatacacgtatcgg 36630400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 60 - 144
Target Start/End: Complemental strand, 45280816 - 45280729
Alignment:
Q  60 cgtatccgacacgtatcggtcattgttttt---caaataaataaatattaattgactgagacttttccgatacccgtatcggaacgta 144  Q
    |||||| ||||||||||||| ||| |||||   |||| |||||||||||||||||| || |||| ||| |||| |||||||| |||||    
T  45280816 cgtatctgacacgtatcggtaatttttttttctcaaaaaaataaatattaattgaccgatacttctccaatacgcgtatcgggacgta 45280729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 17 - 65
Target Start/End: Original strand, 15043307 - 15043355
Alignment:
Q  17 taaatattaactgtccgatacttctccgatacgcgtatcgggacgtatc 65  Q
    |||||||||| || |||||||||| ||||||| ||||||||||||||||    
T  15043307 taaatattaattggccgatacttcaccgatacacgtatcgggacgtatc 15043355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 17 - 65
Target Start/End: Complemental strand, 36630440 - 36630392
Alignment:
Q  17 taaatattaactgtccgatacttctccgatacgcgtatcgggacgtatc 65  Q
    |||||||||| |||| |||||||||||||||| ||||||||||| ||||    
T  36630440 taaatattaattgtcagatacttctccgatacacgtatcgggacatatc 36630392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 68 - 146
Target Start/End: Original strand, 19928198 - 19928279
Alignment:
Q  68 acacgtatcggtcattgtttttca---aataaataaatattaattgactgagacttttccgatacccgtatcggaacgtatc 146  Q
    |||||||||||||||| ||||||    || ||||||||||||| || |||| |||| |||||||| |||||||| |||||||    
T  19928198 acacgtatcggtcattttttttccttcaaaaaataaatattaactgtctgatacttctccgatacgcgtatcgggacgtatc 19928279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 19 - 65
Target Start/End: Original strand, 22205363 - 22205409
Alignment:
Q  19 aatattaactgtccgatacttctccgatacgcgtatcgggacgtatc 65  Q
    |||||||| || ||||||||| ||||||||||||||||| |||||||    
T  22205363 aatattaattgcccgatacttttccgatacgcgtatcggaacgtatc 22205409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 19 - 65
Target Start/End: Complemental strand, 22229376 - 22229330
Alignment:
Q  19 aatattaactgtccgatacttctccgatacgcgtatcgggacgtatc 65  Q
    |||||||| || ||||||||| ||||||||||||||||| |||||||    
T  22229376 aatattaattgcccgatacttttccgatacgcgtatcggaacgtatc 22229330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 154; Significance: 2e-81; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 17 - 218
Target Start/End: Complemental strand, 14811374 - 14811173
Alignment:
Q  17 taaatattaactgtccgatacttctccgatacgcgtatcgggacgtatccgacacgtatcggtcattgtttttcaaataaataaatattaattgactgag 116  Q
    |||||||||| ||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | ||     
T  14811374 taaatattaattgtccgatatttctccgatacacgtatcgggacgtatccgacacgtatcggtcattgtttttcaaaaaaataaatattaattgcccgat 14811275  T
Q  117 acttttccgatacccgtatcggaacgtatcggagcgtatcggtatcggatacgtgtcggatacgatacttcaccatttttgaagtatcggagcttcagag 216  Q
    ||||||||||||| |||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||    
T  14811274 acttttccgatacgcgtatcgggacgtatcggggcgtatcggtatcggatacgtgtcggatacgatacttcaccatttttgaagtgtcggggcttcagag 14811175  T
Q  217 at 218  Q
    ||    
T  14811174 at 14811173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 60 - 218
Target Start/End: Original strand, 14314405 - 14314563
Alignment:
Q  60 cgtatccgacacgtatcggtcattgtttttcaaataaataaatattaattgactgagacttttccgatacccgtatcggaacgtatcggagcgtatcggt 159  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||| | || ||||||||||||| |||||||| ||||||||| ||||||||||    
T  14314405 cgtatccgacacgtatcggtcattgtttttcaaaaaaataaatattaattgcccgatacttttccgatacgcgtatcgggacgtatcggggcgtatcggt 14314504  T
Q  160 atcggatacgtgtcggatacgatacttcaccatttttgaagtatcggagcttcagagat 218  Q
    |||||||||||||||||||||||||||||||||||||| |||||||| |||| ||||||    
T  14314505 atcggatacgtgtcggatacgatacttcaccatttttggagtatcggggctttagagat 14314563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 151 - 216
Target Start/End: Original strand, 32751109 - 32751174
Alignment:
Q  151 cgtatcggtatcggatacgtgtcggatacgatacttcaccatttttgaagtatcggagcttcagag 216  Q
    ||||||||||||||||||||||||||||  || |||||||||||||| ||||||||||||||||||    
T  32751109 cgtatcggtatcggatacgtgtcggatataattcttcaccatttttggagtatcggagcttcagag 32751174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 151 - 206
Target Start/End: Original strand, 27709937 - 27709992
Alignment:
Q  151 cgtatcggtatcggatacgtgtcggatacgatacttcaccatttttgaagtatcgg 206  Q
    ||||||||||||||||||||||| || ||||| |||||||||||||| ||||||||    
T  27709937 cgtatcggtatcggatacgtgtcagacacgattcttcaccatttttggagtatcgg 27709992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 86 - 196
Target Start/End: Original strand, 13043932 - 13044042
Alignment:
Q  86 ttttcaaataaataaatattaattgactgagacttttccgatacccgtatcggaacgtatcggagcgtatcggtatcggatacgtgtcggatacgatact 185  Q
    |||||||| |||||||||||||||||||   |||| | |||||| | |||||| | |||||||  | ||||| |||| |||| ||||||| |||||| ||    
T  13043932 ttttcaaaaaaataaatattaattgacttgtacttcttcgatacgcatatcgggatgtatcggtacatatcgatatcagatatgtgtcgggtacgattct 13044031  T
Q  186 tcaccattttt 196  Q
    |||||||||||    
T  13044032 tcaccattttt 13044042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 17 - 65
Target Start/End: Original strand, 14314443 - 14314491
Alignment:
Q  17 taaatattaactgtccgatacttctccgatacgcgtatcgggacgtatc 65  Q
    |||||||||| || ||||||||| |||||||||||||||||||||||||    
T  14314443 taaatattaattgcccgatacttttccgatacgcgtatcgggacgtatc 14314491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 60 - 146
Target Start/End: Complemental strand, 14811415 - 14811326
Alignment:
Q  60 cgtatccgacacgtatcggtcattgtttttc---aaataaataaatattaattgactgagacttttccgatacccgtatcggaacgtatc 146  Q
    |||||||||||||||||||||||| ||||||    || |||||||||||||||| | || | || |||||||| |||||||| |||||||    
T  14811415 cgtatccgacacgtatcggtcattttttttccttcaaaaaataaatattaattgtccgatatttctccgatacacgtatcgggacgtatc 14811326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 60 - 148
Target Start/End: Original strand, 14314332 - 14314423
Alignment:
Q  60 cgtatccgacacgtatcggtcattgttt---ttcaaataaataaatattaattgactgagacttttccgatacccgtatcgga-acgtatcgg 148  Q
    |||||||||||||||||||||||| |||   |||||| |||||||||||||||| | || |||| |||||||| |||||| || |||||||||    
T  14314332 cgtatccgacacgtatcggtcatttttttccttcaaa-aaataaatattaattgcccgatacttctccgatacgcgtatccgacacgtatcgg 14314423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 17 - 55
Target Start/End: Original strand, 14314372 - 14314410
Alignment:
Q  17 taaatattaactgtccgatacttctccgatacgcgtatc 55  Q
    |||||||||| || |||||||||||||||||||||||||    
T  14314372 taaatattaattgcccgatacttctccgatacgcgtatc 14314410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 149; Significance: 2e-78; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 17 - 213
Target Start/End: Original strand, 46398072 - 46398268
Alignment:
Q  17 taaatattaactgtccgatacttctccgatacgcgtatcgggacgtatccgacacgtatcggtcattgtttttcaaataaataaatattaattgactgag 116  Q
    |||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | ||     
T  46398072 taaatattaattgtccgatacttctccgatacgtgtatcgggacgtatccgacacgtatcggtcattgtttttcaaaaaaataaatattaattgcccgac 46398171  T
Q  117 acttttccgatacccgtatcggaacgtatcggagcgtatcggtatcggatacgtgtcggatacgatacttcaccatttttgaagtatcggagcttca 213  Q
    ||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| ||||||||||| |||||||| ||||||    
T  46398172 acttttctgatacccgtatcggaacgtatcggagcgtatcggtatcagatacgtgttggatacgatactacaccatttttggagtatcggggcttca 46398268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 68 - 146
Target Start/End: Original strand, 22150678 - 22150756
Alignment:
Q  68 acacgtatcggtcattgtttttcaaataaataaatattaattgactgagacttttccgatacccgtatcggaacgtatc 146  Q
    |||||||||||| ||| ||||||||| ||||| ||||||||||||||| ||||  ||||||| ||||||||||||||||    
T  22150678 acacgtatcggtaattttttttcaaaaaaatatatattaattgactgatacttcaccgatacacgtatcggaacgtatc 22150756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 60 - 136
Target Start/End: Complemental strand, 33368854 - 33368779
Alignment:
Q  60 cgtatccgacacgtatcggtcattgtttttcaaataaataaatattaattgactgagacttttccgatacccgtatc 136  Q
    |||||| ||||||||||||||||| |||| |||| |||||||||||||||| |||| |||| |||||||| ||||||    
T  33368854 cgtatctgacacgtatcggtcattatttt-caaaaaaataaatattaattgcctgatacttctccgatacgcgtatc 33368779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 143 - 213
Target Start/End: Complemental strand, 29096240 - 29096170
Alignment:
Q  143 tatcggagcgtatcggtatcggatacgtgtcggatacgatacttcaccatttttgaagtatcggagcttca 213  Q
    ||||||| |||||| |||||||||||||||  || ||||| ||||| ||||||||||||||||| ||||||    
T  29096240 tatcggaacgtatcagtatcggatacgtgttagacacgattcttcatcatttttgaagtatcggggcttca 29096170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 60 - 146
Target Start/End: Original strand, 46398031 - 46398120
Alignment:
Q  60 cgtatccgacacgtatcggtcattgttttt----caaataaataaatattaattgactgagacttttccgatacccgtatcggaacgtatc 146  Q
    |||||||||||||||||||||||| |||||    |||| |||||||||||||||| | || |||| ||||||||  ||||||| |||||||    
T  46398031 cgtatccgacacgtatcggtcatttttttttcttcaaa-aaataaatattaattgtccgatacttctccgatacgtgtatcgggacgtatc 46398120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 19 - 65
Target Start/End: Complemental strand, 29096273 - 29096227
Alignment:
Q  19 aatattaactgtccgatacttctccgatacgcgtatcgggacgtatc 65  Q
    |||||||| || |||||||||||||||||||| |||||| |||||||    
T  29096273 aatattaattggccgatacttctccgatacgcatatcggaacgtatc 29096227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 145; Significance: 5e-76; HSPs: 24)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 145; E-Value: 5e-76
Query Start/End: Original strand, 17 - 213
Target Start/End: Complemental strand, 17068294 - 17068098
Alignment:
Q  17 taaatattaactgtccgatacttctccgatacgcgtatcgggacgtatccgacacgtatcggtcattgtttttcaaataaataaatattaattgactgag 116  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | ||     
T  17068294 taaatattaactgttcgatacttctccgatacgcgtatcgggacgtatccgacacgtatcggtcattgtttttcaaaaaaataaatattaattgcccgat 17068195  T
Q  117 acttttccgatacccgtatcggaacgtatcggagcgtatcggtatcggatacgtgtcggatacgatacttcaccatttttgaagtatcggagcttca 213  Q
    |||||||||||||| ||||||| ||||||||  |||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||| ||||||    
T  17068194 acttttccgatacctgtatcgggacgtatcgaggcgtattggtatcggatacgtgtcagatacgatacttcaccatttttggagtatcggggcttca 17068098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 145; E-Value: 5e-76
Query Start/End: Original strand, 17 - 213
Target Start/End: Original strand, 17580063 - 17580259
Alignment:
Q  17 taaatattaactgtccgatacttctccgatacgcgtatcgggacgtatccgacacgtatcggtcattgtttttcaaataaataaatattaattgactgag 116  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | ||     
T  17580063 taaatattaactgttcgatacttctccgatacgcgtatcgggacgtatccgacacgtatcggtcattgtttttcaaaaaaataaatattaattgcccgat 17580162  T
Q  117 acttttccgatacccgtatcggaacgtatcggagcgtatcggtatcggatacgtgtcggatacgatacttcaccatttttgaagtatcggagcttca 213  Q
    |||||||||||||| ||||||| ||||||||  |||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||| ||||||    
T  17580163 acttttccgatacctgtatcgggacgtatcgaggcgtattggtatcggatacgtgtcagatacgatacttcaccatttttggagtatcggggcttca 17580259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 17 - 216
Target Start/End: Complemental strand, 29054660 - 29054462
Alignment:
Q  17 taaatattaactgtccgatacttctccgatacgcgtatcgggacgtatccgacacgtatcggtcattgtttttcaaataaataaatattaattgactgag 116  Q
    ||||||||||||||| |||||||| || |||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||| | ||     
T  29054660 taaatattaactgtctgatacttcaccaatacgcgtatcgggacgtatccgacacgtatcagtcattgtttttcaaaaaaataaatattaattgcccgat 29054561  T
Q  117 acttttccgatacccgtatcggaacgtatcggagcgtatcggtatcggatacgtgtcggatacgatacttcaccatttttgaagtatcggagcttcagag 216  Q
    |||||||||||||||||||||| ||||||||  ||||||| |||||||||||||||||||||||||||||||||||||||| |||||||| |||| ||||    
T  29054560 acttttccgatacccgtatcgggacgtatcgaggcgtatc-gtatcggatacgtgtcggatacgatacttcaccatttttggagtatcggggcttgagag 29054462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 17 - 216
Target Start/End: Original strand, 10861763 - 10861952
Alignment:
Q  17 taaatattaactgtccgatacttctccgatacgcgtatcgggacgtatccgacacgtatcggtcattgtttttcaaataaataaatattaattgactgag 116  Q
    |||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| |  |     
T  10861763 taaatattaattgtccgatacttctccgatacgcgtatcggcacgtatccgacacgtatcggtcattgtttttcaaaaaaataaatattaattgcccaat 10861862  T
Q  117 acttttccgatacccgtatcggaacgtatcggagcgtatcggtatcggatacgtgtcggatacgatacttcaccatttttgaagtatcggagcttcagag 216  Q
    ||||||||||||||||||||||||           |||||||||||||||| ||||||| ||||||||||||||||||||| |||||||| |||||||||    
T  10861863 acttttccgatacccgtatcggaa----------tgtatcggtatcggatatgtgtcggttacgatacttcaccatttttggagtatcggggcttcagag 10861952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 41 - 216
Target Start/End: Original strand, 17631155 - 17631317
Alignment:
Q  41 tccgatacgcgtatcgggacgtatccgacacgtatcggtcattgtttttcaaataaataaatattaattgactgagacttttccgatacccgtatcggaa 140  Q
    |||||||| |||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| |||| |||||||||||||||||||||| |    
T  17631155 tccgatacacgtatcgggacgtatctgacacgtatcggtcattgtttttcaaaaaaataaatattaattgcctgatacttttccgatacccgtatcggga 17631254  T
Q  141 cgtatcggagcgtatcggtatcggatacgtgtcggatacgatacttcaccatttttgaagtatcggagcttcagag 216  Q
              |||||||||||||||||||||||||||| ||||   ||||||||||| || ||||| |||||||||    
T  17631255 ----------cgtatcggtatcggatacgtgtcggataagata---caccatttttgtagcatcggggcttcagag 17631317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 17 - 148
Target Start/End: Original strand, 34964717 - 34964844
Alignment:
Q  17 taaatattaactgtccgatacttctccgatacgcgtatcgggacgtatccgacacgtatcggtcattgtttttcaaataaataaatattaattgactgag 116  Q
    |||||||||||  ||||||||||||||||||||| ||||||||    |||||||||||||||||||||||||||||| |||||||||||||||| | ||     
T  34964717 taaatattaaccatccgatacttctccgatacgcatatcggga----tccgacacgtatcggtcattgtttttcaaaaaaataaatattaattgcccgat 34964812  T
Q  117 acttttccgatacccgtatcggaacgtatcgg 148  Q
    ||||||||||||||||||||||||||||||||    
T  34964813 acttttccgatacccgtatcggaacgtatcgg 34964844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 71 - 216
Target Start/End: Complemental strand, 20289405 - 20289270
Alignment:
Q  71 cgtatcggtcattgtttttcaaataaataaatattaattgactgagacttttccgatacccgtatcggaacgtatcggagcgtatcggtatcggatacgt 170  Q
    ||||||||||||||||||||||| |||||||||||||||| | || |||||||||||| ||||||||| |||||||||          |||| |||||||    
T  20289405 cgtatcggtcattgtttttcaaaaaaataaatattaattgcccgatacttttccgatagccgtatcgggacgtatcgg----------tatccgatacgt 20289316  T
Q  171 gtcggatacgatacttcaccatttttgaagtatcggagcttcagag 216  Q
    ||||||||||||||||||||||||||| |||||||| |||||||||    
T  20289315 gtcggatacgatacttcaccatttttggagtatcggggcttcagag 20289270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 71 - 216
Target Start/End: Complemental strand, 21076035 - 21075900
Alignment:
Q  71 cgtatcggtcattgtttttcaaataaataaatattaattgactgagacttttccgatacccgtatcggaacgtatcggagcgtatcggtatcggatacgt 170  Q
    ||||||||||||||||||||||| |||||||||||||||| | || |||||||||||| ||||||||| |||||||||          |||| |||||||    
T  21076035 cgtatcggtcattgtttttcaaaaaaataaatattaattgcccgatacttttccgatagccgtatcgggacgtatcgg----------tatccgatacgt 21075946  T
Q  171 gtcggatacgatacttcaccatttttgaagtatcggagcttcagag 216  Q
    ||||||||||||||||||||||||||| |||||||| |||||||||    
T  21075945 gtcggatacgatacttcaccatttttggagtatcggggcttcagag 21075900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 17 - 146
Target Start/End: Original strand, 17579979 - 17580111
Alignment:
Q  17 taaatattaactgtccgatacttctccgatacgcgtatcgggacgtatccgacacgtatcggtcattgtttttc---aaataaataaatattaattgact 113  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    || ||||||||||||| ||       
T  17579979 taaatattaactgttcgatacttctccgatacgcgtatcgggacgtatccgacacgtatcggtcattttttttccttcaaaaaataaatattaactgttc 17580078  T
Q  114 gagacttttccgatacccgtatcggaacgtatc 146  Q
    || |||| |||||||| |||||||| |||||||    
T  17580079 gatacttctccgatacgcgtatcgggacgtatc 17580111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 126 - 217
Target Start/End: Original strand, 10786846 - 10786937
Alignment:
Q  126 atacccgtatcggaacgtatcggagcgtatcggtatcggatacgtgtcggatacgatacttcaccatttttgaagtatcggagcttcagaga 217  Q
    ||||| ||||||| |||||| || |||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| |||||    
T  10786846 atacctgtatcgggacgtattggggcgtctcggtatcggatacgtgtcggatacgatacttcaccatttttggagtatcggggcttgagaga 10786937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 17 - 57
Target Start/End: Complemental strand, 20289438 - 20289398
Alignment:
Q  17 taaatattaactgtccgatacttctccgatacgcgtatcgg 57  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  20289438 taaatattaactgtccgatacttctccgatacgcgtatcgg 20289398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 17 - 57
Target Start/End: Complemental strand, 21076068 - 21076028
Alignment:
Q  17 taaatattaactgtccgatacttctccgatacgcgtatcgg 57  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  21076068 taaatattaactgtccgatacttctccgatacgcgtatcgg 21076028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 60 - 146
Target Start/End: Original strand, 10861723 - 10861811
Alignment:
Q  60 cgtatccgacacgtatcggtcattgtttt---tcaaataaataaatattaattgactgagacttttccgatacccgtatcggaacgtatc 146  Q
    |||||||||||||||||||||||| ||||   ||||| |||||||||||||||| | || |||| |||||||| |||||||| |||||||    
T  10861723 cgtatccgacacgtatcggtcatttttttccttcaaa-aaataaatattaattgtccgatacttctccgatacgcgtatcggcacgtatc 10861811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 117 - 205
Target Start/End: Complemental strand, 17048274 - 17048185
Alignment:
Q  117 acttttccgatacccgtatcggaacgtatcgga-gcgtatcggtatcggatacgtgtcggatacgatacttcaccatttttgaagtatcg 205  Q
    |||||||||||||  ||||||||| |||||||| | ||||||||||||| | | | ||||| |||||||||||||||||||  |||||||    
T  17048274 acttttccgatacgagtatcggaatgtatcggaagagtatcggtatcgggtgcttatcggacacgatacttcaccatttttagagtatcg 17048185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 61 - 146
Target Start/End: Original strand, 3046799 - 3046884
Alignment:
Q  61 gtatccgacacgtatcggtcattgtttttcaaataaataaatattaattgactgagacttttccgatacccgtatcggaacgtatc 146  Q
    ||||| ||||||||||||| | | |||||| || |||||||||||||||| |  | |||| |||||||| |||||||| |||||||    
T  3046799 gtatcagacacgtatcggtaaatttttttcgaaaaaataaatattaattgcccaatacttctccgatacacgtatcgggacgtatc 3046884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 17 - 65
Target Start/End: Original strand, 3046836 - 3046884
Alignment:
Q  17 taaatattaactgtccgatacttctccgatacgcgtatcgggacgtatc 65  Q
    |||||||||| || || ||||||||||||||| ||||||||||||||||    
T  3046836 taaatattaattgcccaatacttctccgatacacgtatcgggacgtatc 3046884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 60 - 138
Target Start/End: Complemental strand, 20289479 - 20289398
Alignment:
Q  60 cgtatccgacacgtatcggtcattgtttttc---aaataaataaatattaattgactgagacttttccgatacccgtatcgg 138  Q
    |||||||||||||||||||||||| ||||||    || ||||||||||||| || | || |||| |||||||| ||||||||    
T  20289479 cgtatccgacacgtatcggtcattttttttccttcaaaaaataaatattaactgtccgatacttctccgatacgcgtatcgg 20289398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 60 - 138
Target Start/End: Complemental strand, 21076109 - 21076028
Alignment:
Q  60 cgtatccgacacgtatcggtcattgtttttc---aaataaataaatattaattgactgagacttttccgatacccgtatcgg 138  Q
    |||||||||||||||||||||||| ||||||    || ||||||||||||| || | || |||| |||||||| ||||||||    
T  21076109 cgtatccgacacgtatcggtcattttttttccttcaaaaaataaatattaactgtccgatacttctccgatacgcgtatcgg 21076028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 60 - 146
Target Start/End: Complemental strand, 29054701 - 29054612
Alignment:
Q  60 cgtatccgacacgtatcggtcattgtttttca---aataaataaatattaattgactgagacttttccgatacccgtatcggaacgtatc 146  Q
    |||||||||||||||| ||||||| ||||||    |||||||||||||||| || |||| ||||  || |||| |||||||| |||||||    
T  29054701 cgtatccgacacgtataggtcattttttttccttcaataaataaatattaactgtctgatacttcaccaatacgcgtatcgggacgtatc 29054612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 63 - 146
Target Start/End: Complemental strand, 17068332 - 17068246
Alignment:
Q  63 atccgacacgtatcggtcattgtttttc---aaataaataaatattaattgactgagacttttccgatacccgtatcggaacgtatc 146  Q
    ||||||||||||||||||||| ||||||    || ||||||||||||| ||   || |||| |||||||| |||||||| |||||||    
T  17068332 atccgacacgtatcggtcattttttttccttcaaaaaataaatattaactgttcgatacttctccgatacgcgtatcgggacgtatc 17068246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 63 - 146
Target Start/End: Original strand, 17579941 - 17580027
Alignment:
Q  63 atccgacacgtatcggtcattgtttttc---aaataaataaatattaattgactgagacttttccgatacccgtatcggaacgtatc 146  Q
    ||||||||||||||||||||| ||||||    || ||||||||||||| ||   || |||| |||||||| |||||||| |||||||    
T  17579941 atccgacacgtatcggtcattttttttccttcaaaaaataaatattaactgttcgatacttctccgatacgcgtatcgggacgtatc 17580027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 17 - 65
Target Start/End: Original strand, 17631212 - 17631260
Alignment:
Q  17 taaatattaactgtccgatacttctccgatacgcgtatcgggacgtatc 65  Q
    |||||||||| || | ||||||| |||||||| ||||||||||||||||    
T  17631212 taaatattaattgcctgatacttttccgatacccgtatcgggacgtatc 17631260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 17 - 65
Target Start/End: Complemental strand, 20289378 - 20289330
Alignment:
Q  17 taaatattaactgtccgatacttctccgatacgcgtatcgggacgtatc 65  Q
    |||||||||| || ||||||||| |||||||  ||||||||||||||||    
T  20289378 taaatattaattgcccgatacttttccgatagccgtatcgggacgtatc 20289330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 17 - 65
Target Start/End: Complemental strand, 21076008 - 21075960
Alignment:
Q  17 taaatattaactgtccgatacttctccgatacgcgtatcgggacgtatc 65  Q
    |||||||||| || ||||||||| |||||||  ||||||||||||||||    
T  21076008 taaatattaattgcccgatacttttccgatagccgtatcgggacgtatc 21075960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 141; Significance: 1e-73; HSPs: 2)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 17 - 213
Target Start/End: Original strand, 38029 - 38225
Alignment:
Q  17 taaatattaactgtccgatacttctccgatacgcgtatcgggacgtatccgacacgtatcggtcattgtttttcaaataaataaatattaattgactgag 116  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||  || |||||||||||||||| | ||     
T  38029 taaatattaactgtccgatacttctccgatacgcgtattgggacgtatccgacacgtatcggtcattgtttttttaagaaataaatattaattgcccgat 38128  T
Q  117 acttttccgatacccgtatcggaacgtatcggagcgtatcggtatcggatacgtgtcggatacgatacttcaccatttttgaagtatcggagcttca 213  Q
    ||||||| |||||||||||||| ||||||||| ||||||||||||| ||||||||||||||||||||||||| |||||||| |||||||| ||||||    
T  38129 acttttctgatacccgtatcgggacgtatcggggcgtatcggtatcagatacgtgtcggatacgatacttcatcatttttggagtatcggggcttca 38225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 60 - 146
Target Start/End: Original strand, 37989 - 38077
Alignment:
Q  60 cgtatccgacacgtatcggtcattgttt---ttcaaataaataaatattaattgactgagacttttccgatacccgtatcggaacgtatc 146  Q
    |||||||||||||||||||||||| |||   |||||| ||||||||||||| || | || |||| |||||||| ||||| || |||||||    
T  37989 cgtatccgacacgtatcggtcatttttttccttcaaa-aaataaatattaactgtccgatacttctccgatacgcgtattgggacgtatc 38077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 141; Significance: 1e-73; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 17 - 217
Target Start/End: Complemental strand, 4533569 - 4533370
Alignment:
Q  17 taaatattaactgtccgatacttctccgatacgcgtatcgggacgtatccgacacgtatcggtcattgtttttcaaataaataaatattaattgactgag 116  Q
    |||||| ||| |||| |||||||||| |||||||||||||| ||||||||||||| ||||||||||||||||||||| |||||||||||||||| | ||     
T  4533569 taaataataattgtctgatacttctc-gatacgcgtatcggaacgtatccgacacatatcggtcattgtttttcaaaaaaataaatattaattgcccgat 4533471  T
Q  117 acttttccgatacccgtatcggaacgtatcggagcgtatcggtatcggatacgtgtcggatacgatacttcaccatttttgaagtatcggagcttcagag 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||  |||||||||    
T  4533470 acttttccgatacccgtatcggaacgtatcggagcgtatcggtatcagatacgtgtcggatacgatacttcaccattttcgaagtatcgcggcttcagag 4533371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 17 - 216
Target Start/End: Complemental strand, 39674277 - 39674088
Alignment:
Q  17 taaatattaactgtccgatacttctccgatacgcgtatcgggacgtatccgacacgtatcggtcattgtttttcaaataaataaatattaattgactgag 116  Q
    ||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| | ||     
T  39674277 taaatattaactgtccgatacttttgcgatacgcgtatcgggacgtatccgacacgtatcggtcattgttttttaaaaaaataaatattaattgcccgat 39674178  T
Q  117 acttttccgatacccgtatcggaacgtatcggagcgtatcggtatcggatacgtgtcggatacgatacttcaccatttttgaagtatcggagcttcagag 216  Q
    ||||||| |||||||||||||| |          | ||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  39674177 acttttctgatacccgtatcggga----------catatcggtatcgaatacgtgtcggatacgatacttcaccatttttgaagtatcggggcttcagag 39674088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 17 - 216
Target Start/End: Complemental strand, 39579992 - 39579803
Alignment:
Q  17 taaatattaactgtccgatacttctccgatacgcgtatcgggacgtatccgacacgtatcggtcattgtttttcaaataaataaatattaattgactgag 116  Q
    |||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| | ||     
T  39579992 taaatattaattgtccgatacttctccgatacgcatatcgggacgtatccgacacgtattggtcattgtttttcaaaaaaataaatattaattgcccgat 39579893  T
Q  117 acttttccgatacccgtatcggaacgtatcggagcgtatcggtatcggatacgtgtcggatacgatacttcaccatttttgaagtatcggagcttcagag 216  Q
    |||||||||||||||||||||| |          |||||| ||||| |||||||||| ||||||||||||||||||||||| |||||||| |||||||||    
T  39579892 acttttccgatacccgtatcggga----------cgtatcagtatcagatacgtgtcagatacgatacttcaccatttttggagtatcggggcttcagag 39579803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 17 - 216
Target Start/End: Original strand, 53330671 - 53330860
Alignment:
Q  17 taaatattaactgtccgatacttctccgatacgcgtatcgggacgtatccgacacgtatcggtcattgtttttcaaataaataaatattaattgactgag 116  Q
    ||||||||||||| ||||| ||| || ||||||||||||||||||||| |||||||||| ||||||||||||||||| |||||||||||||||| | ||     
T  53330671 taaatattaactgcccgatgcttttctgatacgcgtatcgggacgtattcgacacgtattggtcattgtttttcaaaaaaataaatattaattgtccgat 53330770  T
Q  117 acttttccgatacccgtatcggaacgtatcggagcgtatcggtatcggatacgtgtcggatacgatacttcaccatttttgaagtatcggagcttcagag 216  Q
    |||||||||||||           |||||||  ||||||||||||| ||||| |||||||||||||||||||||||||||| |||||||| |||||||||    
T  53330771 acttttccgatac----------gcgtatcgaggcgtatcggtatcagatacatgtcggatacgatacttcaccatttttggagtatcggggcttcagag 53330860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 17 - 216
Target Start/End: Original strand, 53334355 - 53334544
Alignment:
Q  17 taaatattaactgtccgatacttctccgatacgcgtatcgggacgtatccgacacgtatcggtcattgtttttcaaataaataaatattaattgactgag 116  Q
    ||||||||||||| ||||| ||| || ||||||||||||||||||||| |||||||||| ||||||||||||||||| |||||||||||||||| | ||     
T  53334355 taaatattaactgcccgatgcttttctgatacgcgtatcgggacgtattcgacacgtattggtcattgtttttcaaaaaaataaatattaattgtccgat 53334454  T
Q  117 acttttccgatacccgtatcggaacgtatcggagcgtatcggtatcggatacgtgtcggatacgatacttcaccatttttgaagtatcggagcttcagag 216  Q
    |||||||||||||           |||||||  ||||||||||||| ||||| |||||||||||||||||||||||||||| |||||||| |||||||||    
T  53334455 acttttccgatac----------gcgtatcgaggcgtatcggtatcagatacatgtcggatacgatacttcaccatttttggagtatcggggcttcagag 53334544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 17 - 216
Target Start/End: Original strand, 53338032 - 53338221
Alignment:
Q  17 taaatattaactgtccgatacttctccgatacgcgtatcgggacgtatccgacacgtatcggtcattgtttttcaaataaataaatattaattgactgag 116  Q
    ||||||||||||| ||||| ||| || ||||||||||||||||||||| |||||||||| ||||||||||||||||| |||||||||||||||| | ||     
T  53338032 taaatattaactgcccgatgcttttctgatacgcgtatcgggacgtattcgacacgtattggtcattgtttttcaaaaaaataaatattaattgtccgat 53338131  T
Q  117 acttttccgatacccgtatcggaacgtatcggagcgtatcggtatcggatacgtgtcggatacgatacttcaccatttttgaagtatcggagcttcagag 216  Q
    |||||||||||||           |||||||  ||||||||||||| ||||| |||||||||||||||||||||||||||| |||||||| |||||||||    
T  53338132 acttttccgatac----------gcgtatcgaggcgtatcggtatcagatacatgtcggatacgatacttcaccatttttggagtatcggggcttcagag 53338221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 17 - 216
Target Start/End: Complemental strand, 25041436 - 25041248
Alignment:
Q  17 taaatattaactgtccgatacttctccgatacgcgtatcgggacgtatccgacacgtatcggtcattgtttttcaaataaataaatattaattgactgag 116  Q
    |||||||||| |||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||   ||     
T  25041436 taaatattaattgtccgatacttctccaatacgcgtattgggacgtatccgacacgtatcggtcattgtttttcaaaaaaataaatattaattgcgcgat 25041337  T
Q  117 acttttccgatacccgtatcggaacgtatcggagcgtatcggtatcggatacgtgtcggatacgatacttcaccatttttgaagtatcggagcttcagag 216  Q
    ||||||| ||||| |||||||| |||||| ||| | ||||| ||           || |||||||||||||||||||||||||||||||| |||||||||    
T  25041336 acttttctgatactcgtatcgggacgtattggaacatatcgtta-----------tcagatacgatacttcaccatttttgaagtatcggggcttcagag 25041248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 17 - 138
Target Start/End: Complemental strand, 958934 - 958813
Alignment:
Q  17 taaatattaactgtccgatacttctccgatacgcgtatcgggacgtatccgacacgtatcggtcattgtttttcaaataaataaatattaattgactgag 116  Q
    |||||||||| |||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| | ||     
T  958934 taaatattaaatgtttgatacttctccgatacgcgtatcgggacgtatccgacacgtatcggtcattgtttttcaaaaatataaatattaattgcccgat 958835  T
Q  117 acttttccgatacccgtatcgg 138  Q
    ||||||||||||||||||||||    
T  958834 acttttccgatacccgtatcgg 958813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 60 - 216
Target Start/End: Complemental strand, 42864409 - 42864250
Alignment:
Q  60 cgtatccgacacgtatcggtcattgtttttca---aataaataaatattaattgactgagacttttccgatacccgtatcggaacgtatcggagcgtatc 156  Q
    ||||||||||| |||||||||||| ||||||    || ||||||||||||| || | || |||| ||||||||  || |||| |||||| || |||||||    
T  42864409 cgtatccgacatgtatcggtcattttttttccttcaaaaaataaatattaactgtccgatacttctccgatacaagtgtcgggacgtattggggcgtatc 42864310  T
Q  157 ggtatcggatacgtgtcggatacgatacttcaccatttttgaagtatcggagcttcagag 216  Q
    ||||||||||||||||||||||||||||||||||||||||| ||| |||| |||||||||    
T  42864309 ggtatcggatacgtgtcggatacgatacttcaccatttttggagtttcggggcttcagag 42864250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 126 - 216
Target Start/End: Original strand, 53363109 - 53363199
Alignment:
Q  126 atacccgtatcggaacgtatcggagcgtatcggtatcggatacgtgtcggatacgatacttcaccatttttgaagtatcggagcttcagag 216  Q
    |||| |||||||| ||||||||| | ||||||||||| ||||| |||||||||||||||||||||||||||| |||||||| |||||||||    
T  53363109 atacgcgtatcgggacgtatcggggtgtatcggtatcagatacatgtcggatacgatacttcaccatttttggagtatcggggcttcagag 53363199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 153 - 204
Target Start/End: Original strand, 41530477 - 41530528
Alignment:
Q  153 tatcggtatcggatacgtgtcggatacgatacttcaccatttttgaagtatc 204  Q
    ||||||| |||||||||||||||| ||||| |||||||||||||||||||||    
T  41530477 tatcggtgtcggatacgtgtcggacacgattcttcaccatttttgaagtatc 41530528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 152 - 213
Target Start/End: Original strand, 27391352 - 27391413
Alignment:
Q  152 gtatcggtatcggatacgtgtcggatacgatacttcaccatttttgaagtatcggagcttca 213  Q
    |||||||||||||||||||||| || ||||| |||||||||||||| ||||| || ||||||    
T  27391352 gtatcggtatcggatacgtgtcagacacgattcttcaccatttttggagtataggggcttca 27391413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 60 - 146
Target Start/End: Complemental strand, 39580032 - 39579944
Alignment:
Q  60 cgtatccgacacgtatcggtcattgtt---tttcaaataaataaatattaattgactgagacttttccgatacccgtatcggaacgtatc 146  Q
    |||||||||||||||||||||||| ||   ||||||| |||||||||||||||| | || |||| |||||||| | |||||| |||||||    
T  39580032 cgtatccgacacgtatcggtcatttttttctttcaaa-aaataaatattaattgtccgatacttctccgatacgcatatcgggacgtatc 39579944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 17 - 64
Target Start/End: Complemental strand, 42864368 - 42864321
Alignment:
Q  17 taaatattaactgtccgatacttctccgatacgcgtatcgggacgtat 64  Q
    ||||||||||||||||||||||||||||||||  || |||||||||||    
T  42864368 taaatattaactgtccgatacttctccgatacaagtgtcgggacgtat 42864321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 142 - 203
Target Start/End: Original strand, 24645638 - 24645699
Alignment:
Q  142 gtatcggagcgtatcggtatcggatacgtgtcggatacgatacttcaccatttttgaagtat 203  Q
    |||||||  |||||| ||||||||||||||||| | ||||| |||||||||||||| |||||    
T  24645638 gtatcggtacgtatcagtatcggatacgtgtcgaacacgattcttcaccatttttggagtat 24645699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 153 - 206
Target Start/End: Complemental strand, 29359722 - 29359669
Alignment:
Q  153 tatcggtatcggatacgtgtcggatacgatacttcaccatttttgaagtatcgg 206  Q
    |||||||||||||||||||| ||| ||||| ||||  |||||||||||||||||    
T  29359722 tatcggtatcggatacgtgttggacacgattcttcgtcatttttgaagtatcgg 29359669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 60 - 146
Target Start/End: Complemental strand, 958974 - 958886
Alignment:
Q  60 cgtatccgacacgtatcggtcattgtttt---tcaaataaataaatattaattgactgagacttttccgatacccgtatcggaacgtatc 146  Q
    ||||||||||||||||| |||||| ||||   ||||| ||||||||||||| ||  ||| |||| |||||||| |||||||| |||||||    
T  958974 cgtatccgacacgtatcagtcatttttttccttcaaa-aaataaatattaaatgtttgatacttctccgatacgcgtatcgggacgtatc 958886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 60 - 146
Target Start/End: Complemental strand, 39674318 - 39674229
Alignment:
Q  60 cgtatccgacacgtatcggtcattgtttttca---aataaataaatattaattgactgagacttttccgatacccgtatcggaacgtatc 146  Q
    ||||||||||||||||||||| || ||||||    || ||||||||||||| || | || |||||| |||||| |||||||| |||||||    
T  39674318 cgtatccgacacgtatcggtctttttttttccttcaaaaaataaatattaactgtccgatacttttgcgatacgcgtatcgggacgtatc 39674229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 138; Significance: 8e-72; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 138; E-Value: 8e-72
Query Start/End: Original strand, 17 - 206
Target Start/End: Complemental strand, 11382613 - 11382424
Alignment:
Q  17 taaatattaactgtccgatacttctccgatacgcgtatcgggacgtatccgacacgtatcggtcattgtttttcaaataaataaatattaattgactgag 116  Q
    |||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | ||     
T  11382613 taaatattaattgtccgatacttcttcgatacgcgtatcgggacgtatccgacacgtatcggtcattgtttttcaaaaaaataaatattaattgtccgat 11382514  T
Q  117 acttttccgatacccgtatcggaacgtatcggagcgtatcggtatcggatacgtgtcggatacgatacttcaccatttttgaagtatcgg 206  Q
    ||||||| |||||||||||||| | ||||||| |||||||| ||||||||||||||| ||||||||||||||||||||||| ||||||||    
T  11382513 acttttctgatacccgtatcgggatgtatcggggcgtatcgatatcggatacgtgtctgatacgatacttcaccatttttggagtatcgg 11382424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 41 - 220
Target Start/End: Complemental strand, 21112174 - 21111995
Alignment:
Q  41 tccgatacgcgtatcgggacgtatccgacacgtatcggtcattgtttttcaaataaataaatattaattgactgagacttttccgatacccgtatcggaa 140  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | || |||||||||||||||||||||| |    
T  21112174 tccgatacgcgtatcgggacgtatccgacacgtatcggtcattgtttttcaaaaaaataaatattaattgcccgatacttttccgatacccgtatcggga 21112075  T
Q  141 cgtatcggagcgtatcggtatcggatacgtgtcggatacgatacttcaccatttttgaagtatcggagcttcagagattc 220  Q
    | |||||  |||||||| |||| ||||||| |||||||||||||||||||||||||| ||||||||  ||| ||||||||    
T  21112074 catatcgaggcgtatcgatatccgatacgtatcggatacgatacttcaccatttttggagtatcgggactttagagattc 21111995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 17 - 216
Target Start/End: Complemental strand, 8862128 - 8861950
Alignment:
Q  17 taaatattaactgtccgatacttctccgatacgcgtatcgggacgtatccgacacgtatcggtcattgtttttcaaataaataaatattaattgactgag 116  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||           ||||||||||||||||| |||||||||||||||| | ||     
T  8862128 taaatattaactatccgatacttctccgatacgcgtatcgggacgtatc-----------ggtcattgtttttcaaaaaaataaatattaattgcccgat 8862040  T
Q  117 acttttccgatacccgtatcggaacgtatcggagcgtatcggtatcggatacgtgtcggatacgatacttcaccatttttgaagtatcggagcttcagag 216  Q
    | ||||||||||||||||| ||           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||    
T  8862039 atttttccgatacccgtattggg----------gcgtatcggtatcggatacgtgtcggatacgatacttcaccatttttggagtatcggggcttcagag 8861950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 60 - 146
Target Start/End: Complemental strand, 11382654 - 11382565
Alignment:
Q  60 cgtatccgacacgtatcggtcattgtttttca---aataaataaatattaattgactgagacttttccgatacccgtatcggaacgtatc 146  Q
    |||||||||||||||||| ||||| ||||||    || |||||||||||||||| | || |||| | |||||| |||||||| |||||||    
T  11382654 cgtatccgacacgtatcgctcattttttttccttcaaaaaataaatattaattgtccgatacttcttcgatacgcgtatcgggacgtatc 11382565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 68 - 170
Target Start/End: Original strand, 5013400 - 5013502
Alignment:
Q  68 acacgtatcggtcattgtttttcaaataaataaatattaattgactgagacttttccgatacccgtatcggaacgtatcggagcgtatcggtatcggata 167  Q
    |||||||||  ||||| ||||| |||| ||||||||||||||| | || |||| || ||||| | ||| |||||||||||  |||||||  | |||||||    
T  5013400 acacgtatcaatcatttttttttaaatgaataaatattaattgtccgatacttatctgatacgcatataggaacgtatcgaggcgtatcaatgtcggata 5013499  T
Q  168 cgt 170  Q
    |||    
T  5013500 cgt 5013502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 17 - 65
Target Start/End: Complemental strand, 21112117 - 21112069
Alignment:
Q  17 taaatattaactgtccgatacttctccgatacgcgtatcgggacgtatc 65  Q
    |||||||||| || ||||||||| |||||||| ||||||||||| ||||    
T  21112117 taaatattaattgcccgatacttttccgatacccgtatcgggacatatc 21112069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 102; Significance: 2e-50; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 17 - 197
Target Start/End: Complemental strand, 36606275 - 36606105
Alignment:
Q  17 taaatattaactgtccgatacttctccgatacgcgtatcgggacgtatccgacacgtatcggtcattgtttttcaaataaataaatattaattgactgag 116  Q
    |||||||||| |||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||  ||||     
T  36606275 taaatattaattgtccgatacttctccgacacgcatatcgggacgtatccgacacgtatcggtcattgtttttcaaaaaaataaatattaatttcctgat 36606176  T
Q  117 acttttccgatacccgtatcggaacgtatcggagcgtatcggtatcggatacgtgtcggatacgatacttcaccatttttg 197  Q
    | |||||||||||||||||||| |          ||||||| |||||||||||||| ||||||||||||||||||||||||    
T  36606175 atttttccgatacccgtatcggga----------cgtatcgatatcggatacgtgtaggatacgatacttcaccatttttg 36606105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 60 - 216
Target Start/End: Complemental strand, 6665776 - 6665622
Alignment:
Q  60 cgtatccgacacgtatcggtcattgtttttcaaataaataaatattaattgactgagacttttccgatacccgtatcggaacgtatcggagcgtatcggt 159  Q
    |||||||||||||||||||| ||| ||||||||| |||  |||||||||||   || |||| |||||||| ||||| || ||||||||| ||||||||||    
T  6665776 cgtatccgacacgtatcggtaattttttttcaaaaaaa--aatattaattgctcgatacttctccgatacgcgtattgggacgtatcggggcgtatcggt 6665679  T
Q  160 atcggatacgtgtcggatacgatacttcaccatttttgaagtatcggagcttcagag 216  Q
    |||| |||||||||||| ||||| |||||||||||| | |||||||| |||||||||    
T  6665678 atcgaatacgtgtcggacacgatccttcaccattttcggagtatcggggcttcagag 6665622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 17 - 76
Target Start/End: Complemental strand, 8871342 - 8871283
Alignment:
Q  17 taaatattaactgtccgatacttctccgatacgcgtatcgggacgtatccgacacgtatc 76  Q
    |||||||||| ||||||||||||||| |||||||||||||||||||  ||||||||||||    
T  8871342 taaatattaattgtccgatacttctctgatacgcgtatcgggacgtgcccgacacgtatc 8871283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 60 - 143
Target Start/End: Complemental strand, 8871383 - 8871297
Alignment:
Q  60 cgtatccgacacgtatcggtcattgtttttc---aaataaataaatattaattgactgagacttttccgatacccgtatcggaacgt 143  Q
    |||||||||||||||||||||||| ||||||    || |||||||||||||||| | || |||| || ||||| |||||||| ||||    
T  8871383 cgtatccgacacgtatcggtcattttttttccttcaaaaaataaatattaattgtccgatacttctctgatacgcgtatcgggacgt 8871297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 65
Target Start/End: Complemental strand, 6665739 - 6665692
Alignment:
Q  18 aaatattaactgtccgatacttctccgatacgcgtatcgggacgtatc 65  Q
    ||||||||| ||  ||||||||||||||||||||||| ||||||||||    
T  6665739 aaatattaattgctcgatacttctccgatacgcgtattgggacgtatc 6665692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 60 - 107
Target Start/End: Complemental strand, 32658957 - 32658910
Alignment:
Q  60 cgtatccgacacgtatcggtcattgtttttcaaataaataaatattaa 107  Q
    |||||| |||||||||| |||||| ||||||||| |||||||||||||    
T  32658957 cgtatctgacacgtatcagtcattttttttcaaagaaataaatattaa 32658910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 69; Significance: 1e-30; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 41 - 148
Target Start/End: Complemental strand, 54260211 - 54260103
Alignment:
Q  41 tccgatacgcgtatcgggacgtatccgacacgtatcggtcattgtttttc-aaataaataaatattaattgactgagacttttccgatacccgtatcgga 139  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| | || |||||||| ||||||||| |||     
T  54260211 tccgatacgcgtatcgggacgtatccgacacgtatcggtcattgtttttcaaaaaaaataaatattaattgcccgatacttttcccatacccgtaccggg 54260112  T
Q  140 acgtatcgg 148  Q
     ||||||||    
T  54260111 gcgtatcgg 54260103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 151 - 206
Target Start/End: Complemental strand, 32760483 - 32760428
Alignment:
Q  151 cgtatcggtatcggatacgtgtcggatacgatacttcaccatttttgaagtatcgg 206  Q
    |||||||||||| ||||||||| ||| ||||| |||||||||||||||||||||||    
T  32760483 cgtatcggtatcagatacgtgttggacacgattcttcaccatttttgaagtatcgg 32760428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 143 - 216
Target Start/End: Original strand, 563342 - 563415
Alignment:
Q  143 tatcggagcgtatcggtatcggatacgtgtcggatacgatacttcaccatttttgaagtatcggagcttcagag 216  Q
    |||||| |||||||||||||||||| ||||| |||||||| |||| | ||||||| |||||||| |||| ||||    
T  563342 tatcggggcgtatcggtatcggatatgtgtcagatacgattcttcgcgatttttggagtatcggggctttagag 563415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 68 - 138
Target Start/End: Complemental strand, 26261125 - 26261055
Alignment:
Q  68 acacgtatcggtcattgtttttcaaataaataaatattaattgactgagacttttccgatacccgtatcgg 138  Q
    |||||||||||||||| ||||||| | |||||||||||||||| | || |||| |||||||  ||||||||    
T  26261125 acacgtatcggtcattttttttcataaaaataaatattaattgcccgatacttctccgatatgcgtatcgg 26261055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 58
Target Start/End: Complemental strand, 26261095 - 26261054
Alignment:
Q  17 taaatattaactgtccgatacttctccgatacgcgtatcggg 58  Q
    |||||||||| || ||||||||||||||||| ||||||||||    
T  26261095 taaatattaattgcccgatacttctccgatatgcgtatcggg 26261054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0037 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: scaffold0037
Description:

Target: scaffold0037; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 117 - 205
Target Start/End: Original strand, 4403 - 4492
Alignment:
Q  117 acttttccgatacccgtatcggaacgtatcgga-gcgtatcggtatcggatacgtgtcggatacgatacttcaccatttttgaagtatcg 205  Q
    |||||||||||||  ||||||||| |||||||| | ||||||||||||| | | | ||||| |||||||||||||||||||  |||||||    
T  4403 acttttccgatacgagtatcggaatgtatcggaagagtatcggtatcgggtgcttatcggacacgatacttcaccatttttagagtatcg 4492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0274 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: scaffold0274
Description:

Target: scaffold0274; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 23 - 65
Target Start/End: Original strand, 14400 - 14442
Alignment:
Q  23 ttaactgtccgatacttctccgatacgcgtatcgggacgtatc 65  Q
    ||||||| |||||||||||||||||||||||||||| ||||||    
T  14400 ttaactgcccgatacttctccgatacgcgtatcggggcgtatc 14442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0274; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 141 - 202
Target Start/End: Original strand, 14427 - 14488
Alignment:
Q  141 cgtatcggagcgtatcggtatcggatacgtgtcggatacgatacttcaccatttttgaagta 202  Q
    |||||||| |||||||||||| ||||||| ||| |  ||||| |||||||||||||| ||||    
T  14427 cgtatcggggcgtatcggtattggatacgcgtcaggcacgattcttcaccatttttggagta 14488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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