View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19079_low_4 (Length: 207)
Name: NF19079_low_4
Description: NF19079
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19079_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 184; Significance: 1e-100; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 184; E-Value: 1e-100
Query Start/End: Original strand, 1 - 188
Target Start/End: Original strand, 10992641 - 10992828
Alignment:
| Q |
1 |
actaccaaaacacacaaaaaattcataaacctgactataatgcctcaaatgcttcttcttatgcatgttataaatcatctgagtagaaagtccgcctcta |
100 |
Q |
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| T |
10992641 |
actaccaaaacacacaaaaaattcataaacctgactataatgcctcaaatgcttcttcttatgcatgttataaatcatctgagtagaaagtccgcctcta |
10992740 |
T |
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| Q |
101 |
ctaagcaaattcctgccaaaaatcctaaacatcggcctacatccattagatgagtcaaagctaggaattcccctaagtataacacaat |
188 |
Q |
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| T |
10992741 |
ctaagcaaattcctgccaaaaatcctaaacatcggcctacatccattagatgaatcaaagctaggaattcccctaagtataacacaat |
10992828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 10992604 - 10992640
Alignment:
| Q |
1 |
actaccaaaacacacaaaaaattcataaacctgacta |
37 |
Q |
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| T |
10992604 |
actaccaaaacacacaaaaaattcataaatctgacta |
10992640 |
T |
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