View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1907_high_1 (Length: 611)
Name: NF1907_high_1
Description: NF1907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1907_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 88; Significance: 5e-42; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 183 - 290
Target Start/End: Complemental strand, 16071187 - 16071081
Alignment:
| Q |
183 |
catgatgatgagaacaattcaaacacaattgtaggatatgaataatttgctctcatttcccaattttctcttttgaattcttttttatagatattttaca |
282 |
Q |
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| T |
16071187 |
catgatgatgagaacaattcaaacacaattgtag-atatgaataattttctctcatttcccaattttttcttttgaattctattttatagatattttaca |
16071089 |
T |
|
| Q |
283 |
gaagatta |
290 |
Q |
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|||||||| |
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| T |
16071088 |
gaagatta |
16071081 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 9 - 114
Target Start/End: Complemental strand, 16071360 - 16071255
Alignment:
| Q |
9 |
tcatcataaatctcaaaccatattcataatccaccactgctcggtcagcatatgttcttttcatcttctgtgatttcgtgtcaagaaaaaatttagaata |
108 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| ||||||||||||||||||| || |
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| T |
16071360 |
tcatcataaatctcaaaccatattcataatccaccactggccggtcagcatatgttcttttcatcttctgttattttatgtcaagaaaaaatttagacta |
16071261 |
T |
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| Q |
109 |
ttagag |
114 |
Q |
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|||||| |
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| T |
16071260 |
ttagag |
16071255 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 456 - 569
Target Start/End: Complemental strand, 16070926 - 16070813
Alignment:
| Q |
456 |
agcaatgagaaaatttcagatctaactttaaaatatcaactcaaagaaacaatttgaaccgtatgacttgacaaaattatgattcaagaaaaactcggag |
555 |
Q |
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|||||||||| ||||||||||||||||| ||||||| ||||||||||| ||||||||||| ||| |||||||| |||||||||| || ||||||| |||| |
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| T |
16070926 |
agcaatgagacaatttcagatctaacttaaaaatataaactcaaagaatcaatttgaaccatataacttgacagaattatgattaaaaaaaaactaggag |
16070827 |
T |
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| Q |
556 |
aataaggagtaaaa |
569 |
Q |
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|||||||||||||| |
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| T |
16070826 |
aataaggagtaaaa |
16070813 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 183 - 314
Target Start/End: Complemental strand, 16067910 - 16067779
Alignment:
| Q |
183 |
catgatgatgagaacaattcaaacacaattgtaggatatgaataatttgctctcatttcccaattttctcttttgaattctttttta-tagatattttac |
281 |
Q |
| |
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||||||||||| ||| |||||||||||||||||| |||||||| ||||||||||||||||||||||| | ||||||| | |||||||||||| |
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| T |
16067910 |
catgatgatgaaaacgattcaaacacaattgtag-atatgaatcatttgctctcatttcccaattttttattttgaaaaaaaaaaaagtagatattttac |
16067812 |
T |
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| Q |
282 |
agaagattagaaaacccaaaattttagggcttg |
314 |
Q |
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| T |
16067811 |
taaagattagaaaacccaaaattttagggcttg |
16067779 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 27 - 114
Target Start/End: Complemental strand, 16068063 - 16067976
Alignment:
| Q |
27 |
catattcataatccaccactgctcggtcagcatatgttcttttcatcttctgtgatttcgtgtcaagaaaaaatttagaatattagag |
114 |
Q |
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| T |
16068063 |
catattcataatccaccactggccggttagcgtatattcttttcatcttctgcggtttcatgtcaagaaaaattttagactattagag |
16067976 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 34 - 105
Target Start/End: Complemental strand, 16078308 - 16078237
Alignment:
| Q |
34 |
ataatccaccactgctcggtcagcatatgttcttttcatcttctgtgatttcgtgtcaagaaaaaatttaga |
105 |
Q |
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| T |
16078308 |
ataatccaccactggccggtcagcataaattcttttcatcttatgtggtttcatgtcaagaaaaaaattaga |
16078237 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000004; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 187 - 247
Target Start/End: Complemental strand, 3883780 - 3883721
Alignment:
| Q |
187 |
atgatgagaacaattcaaacacaattgtaggatatgaataatttgctctcatttcccaatt |
247 |
Q |
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| T |
3883780 |
atgatgagaacgattcaaacataattgtat-atatgaatcatttgatctcatttcccaatt |
3883721 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 187 - 246
Target Start/End: Complemental strand, 3897648 - 3897590
Alignment:
| Q |
187 |
atgatgagaacaattcaaacacaattgtaggatatgaataatttgctctcatttcccaat |
246 |
Q |
| |
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||||||||||| ||||||||| ||||||| |||||||| |||||||||||||| ||||| |
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| T |
3897648 |
atgatgagaacgattcaaacataattgtat-atatgaatcatttgctctcatttaccaat |
3897590 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 52 - 105
Target Start/End: Complemental strand, 3860158 - 3860105
Alignment:
| Q |
52 |
gtcagcatatgttcttttcatcttctgtgatttcgtgtcaagaaaaaatttaga |
105 |
Q |
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|||||||||| ||||||||||||||||| |||| ||||| |||||||||||| |
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| T |
3860158 |
gtcagcatatattcttttcatcttctgttttttcaagtcaataaaaaatttaga |
3860105 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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