View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1907_high_13 (Length: 340)
Name: NF1907_high_13
Description: NF1907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1907_high_13 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 1 - 340
Target Start/End: Complemental strand, 31431866 - 31431530
Alignment:
| Q |
1 |
agacacacttaaaaagaaaccaactttaagtgtgaacacccatacctgccctatcacatcagtacactaaaaaacaataatttccactnnnnnnntgaca |
100 |
Q |
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| T |
31431866 |
agacacacttaaaaagaaaccaactttaagtgtgaacacccatacctgccctatcacatcagtacactaaaaaacaataatttccactaaaaaa-tgaca |
31431768 |
T |
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| Q |
101 |
tgatgaaagaattaatttttagttcttagcaaggacaaaagcaatatcatatccatttaaattgaaagataaacaattaaacatcggtgcactccaacca |
200 |
Q |
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| T |
31431767 |
tgatgaaagaattaatttttagttcttagcaaggacaaaagcaatatcatatccatttaaattgaaagataaacaattacacatcggtgcactccaacca |
31431668 |
T |
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| Q |
201 |
ttatgcatgtaaacacgatgaagtactctatcactgcatttggctggctaccaattggagcttcctaattttaacagtgtgtgtacattgggacgcaaac |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
31431667 |
ttatgcatgtaaacacgatgaagtactctatcactgcatttggctggctaccaattggagcttcctaattttaacagt--gtgtacattgggacgcaaac |
31431570 |
T |
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| Q |
301 |
aaattatgccaccactcaccaccaatctgaacatgtaggc |
340 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
31431569 |
aaattatgccaccactcaccaccaatctgaacatgtaggc |
31431530 |
T |
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