View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1907_high_20 (Length: 271)
Name: NF1907_high_20
Description: NF1907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1907_high_20 |
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Alignment Details
Target: chr2 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 11 - 256
Target Start/End: Original strand, 3341470 - 3341715
Alignment:
| Q |
11 |
caaaggcatggtgagattagaaaattttatttttatcagaatctctctttaagtgtttttaggcttaaaaacttctaacactaccttgtgcatttgttaa |
110 |
Q |
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| T |
3341470 |
caaagacatggtgagattagaaaattttatttttatcagagtctctctttaagtgtttttaggcttaaaaacttgtaacactaccttgtgcatttgttaa |
3341569 |
T |
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| Q |
111 |
actagataccaaaggtaatgggtggttatgatccatgtctagatgactatgctaaaatattttataacagaccagatgttcagaaggctctccatgccag |
210 |
Q |
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| T |
3341570 |
actagataccaaaggtaatgggtggttatgatccatgtctagatgactatgctaaaatattttataacagaccagatgttcagaaggctctccatgccag |
3341669 |
T |
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| Q |
211 |
tgatggtcacagtctcaagaattggagtatttgcaagtaaatattt |
256 |
Q |
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| T |
3341670 |
tgatggtcacaatctcaagaattggagtatttgcaagtaaatattt |
3341715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 85 - 255
Target Start/End: Original strand, 3334086 - 3334256
Alignment:
| Q |
85 |
ctaacactaccttgtgcatttgttaaactagataccaaaggtaatgggtggttatgatccatgtctagatgactatgctaaaatattttataacagacca |
184 |
Q |
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| T |
3334086 |
ctaacacttctttgtggatttggttgactagataccaaggatcatgggtggttatgatccatgtttggatgactatgctaaagctttttacaacaaacca |
3334185 |
T |
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| Q |
185 |
gatgttcagaaggctctccatgccagtgatggtcacagtctcaagaattggagtatttgcaagtaaatatt |
255 |
Q |
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| T |
3334186 |
gatgttcagaaagcccttcatgccagtgatggtcatagtctaaggaattggagtatttgcaagtatatatt |
3334256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 67; Significance: 8e-30; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 128 - 250
Target Start/End: Complemental strand, 35793310 - 35793188
Alignment:
| Q |
128 |
atgggtggttatgatccatgtctagatgactatgctaaaatattttataacagaccagatgttcagaaggctctccatgccagtgatggtcacagtctca |
227 |
Q |
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|||||||||||||| ||||| | ||||||||||||||| || |||||||||||||||||||||||||| || ||||| ||||||||||| | ||| | |
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| T |
35793310 |
atgggtggttatgacccatgcttggatgactatgctaaagctttctataacagaccagatgttcagaaggcccttcatgctagtgatggtcataatctaa |
35793211 |
T |
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| Q |
228 |
agaattggagtatttgcaagtaa |
250 |
Q |
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| T |
35793210 |
agaattggagtatttgcaagtaa |
35793188 |
T |
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