View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1907_high_24 (Length: 263)
Name: NF1907_high_24
Description: NF1907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1907_high_24 |
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| [»] chr6 (2 HSPs) |
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| [»] chr4 (4 HSPs) |
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| [»] scaffold0024 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 13 - 263
Target Start/End: Complemental strand, 27777298 - 27777048
Alignment:
| Q |
13 |
cagataatatcttaacaaaataaaacaattgaatataatcacatgtgttggtgttgtattcgactgttcatgtcagacatgacacatattggatatcaga |
112 |
Q |
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| T |
27777298 |
cagataatatcttaacaaaataaaacaattgaatataatcacatgtgttggtgtcgtattcgactgttcgtgtcggatatgacacatattggacatcaga |
27777199 |
T |
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| Q |
113 |
cacgacttcaatgcgtacttaatttcctatctaccccttgtttatttttaatttcatattttttgttatgcataggtacatccaaactcatatgcattag |
212 |
Q |
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| T |
27777198 |
cacgacttcaatgcgtatttaatttcctatctaccccttgtttatttttaatttcatattttttgttatgcataggtacatccaaactcatatgcattag |
27777099 |
T |
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| Q |
213 |
tagtgagcacagaaaacatcaacagtgcatggtacttaggaaacaacagat |
263 |
Q |
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| T |
27777098 |
tagtgagcacagaaaacatcaatagtggatggtacttaggaaacagcagat |
27777048 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 29 - 66
Target Start/End: Complemental strand, 10038483 - 10038446
Alignment:
| Q |
29 |
aaaataaaacaattgaatataatcacatgtgttggtgt |
66 |
Q |
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| T |
10038483 |
aaaatagaataattgaatataatcacatgtgttggtgt |
10038446 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 52; Significance: 7e-21; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 184 - 263
Target Start/End: Complemental strand, 19672368 - 19672289
Alignment:
| Q |
184 |
ataggtacatccaaactcatatgcattagtagtgagcacagaaaacatcaacagtgcatggtacttaggaaacaacagat |
263 |
Q |
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| T |
19672368 |
ataggtacatgcaaactcatatgccttaattgtgagcacagaaaacatcaacagtggatattacttaggaaacaacagat |
19672289 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 185 - 263
Target Start/End: Complemental strand, 19540443 - 19540365
Alignment:
| Q |
185 |
taggtacatccaaactcatatgcattagtagtgagcacagaaaacatcaacagtgcatggtacttaggaaacaacagat |
263 |
Q |
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| T |
19540443 |
taggtacatccaaactcatatgccttaattgtgagcatagaaaacatcaacagtggatattacttaggaaacaacagat |
19540365 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 185 - 263
Target Start/End: Complemental strand, 19743487 - 19743409
Alignment:
| Q |
185 |
taggtacatccaaactcatatgcattagtagtgagcacagaaaacatcaacagtgcatggtacttaggaaacaacagat |
263 |
Q |
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| T |
19743487 |
taggtacatcaaaactcatatgccttagttgtgagcacagaaaacaccaacagtggatattacttaggaaacaacagat |
19743409 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 185 - 263
Target Start/End: Original strand, 19796601 - 19796679
Alignment:
| Q |
185 |
taggtacatccaaactcatatgcattagtagtgagcacagaaaacatcaacagtgcatggtacttaggaaacaacagat |
263 |
Q |
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| T |
19796601 |
taggtacatcaaaactcatatgccttagttgtgagcacagaaaacaccaacagtggatattacttaggaaacaacagat |
19796679 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 184 - 221
Target Start/End: Original strand, 15239024 - 15239061
Alignment:
| Q |
184 |
ataggtacatccaaactcatatgcattagtagtgagca |
221 |
Q |
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| T |
15239024 |
ataggtacatccaaactcatatgccttagtagtgagca |
15239061 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 15 - 60
Target Start/End: Original strand, 31924432 - 31924477
Alignment:
| Q |
15 |
gataatatcttaacaaaataaaacaattgaatataatcacatgtgt |
60 |
Q |
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| T |
31924432 |
gataataatttaagaaaatagaacaattgaatataatcacatgtgt |
31924477 |
T |
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Target: scaffold0024 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0024
Description:
Target: scaffold0024; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 66
Target Start/End: Complemental strand, 151140 - 151104
Alignment:
| Q |
30 |
aaataaaacaattgaatataatcacatgtgttggtgt |
66 |
Q |
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| T |
151140 |
aaataaaataattgaatataatcacatgcgttggtgt |
151104 |
T |
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