View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1907_high_25 (Length: 260)
Name: NF1907_high_25
Description: NF1907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1907_high_25 |
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Alignment Details
Target: chr1 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 49955966 - 49956208
Alignment:
| Q |
1 |
aataatgtcaatgaaattattaaaa-aataaattgatcatacgtacctcaatttaaagaaaatattttgtaaagaataaaacggaaatgaaatgaaatgt |
99 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49955966 |
aataatgtcaatgaaattattaaaaaaataaattgatcatacgtacctcaatttaaagaaaatattttgtaaagaataaaacggaaatgaaatgaaatgt |
49956065 |
T |
|
| Q |
100 |
gtagtacatgtatgtttggggcattaaaggtgggttgccctaagaatgaaagatagtagcatttatactaagaaagaaaggaagacaagacatggggtac |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
49956066 |
gtagtacatgtatgtttggggcattaaaggtgggttgccctaagaatgaaagatagtagcatttatactaagaaagaaaggaagacaagacatagggtac |
49956165 |
T |
|
| Q |
200 |
gtagagacatttagcgtggttattgtgctaacagaggggggac |
242 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49956166 |
gtagagacatttagcgtggttattgtgctaacagaggggggac |
49956208 |
T |
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