View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1907_high_3 (Length: 471)
Name: NF1907_high_3
Description: NF1907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1907_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 372; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 17 - 456
Target Start/End: Original strand, 33814011 - 33814459
Alignment:
| Q |
17 |
aaatcattggtggtgccactgcaactcctggcctctgtctttccacgttggcatcccaacctatatttcagactcaattagttctcaaaaacaagtcaag |
116 |
Q |
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| T |
33814011 |
aaatcattggtggtgccactgcaactcctggcctctgtctttccacgttggcatcccaacctatatttcagactcaattagttatcaaaaacaagtcaag |
33814110 |
T |
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| Q |
117 |
ggtcaagcaaaaacaataaaccatatgatatcacaca--------aaaacttttaaccttcaatacctaaaaatataagttagaaatccaactcgaaaac |
208 |
Q |
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| T |
33814111 |
ggtcaagcaaaaacactaaaccatatgatatcacacaaattcacaaaaacttttaaccttcaatacctaaaaatataagttagaaatccaactcgaaaac |
33814210 |
T |
|
| Q |
209 |
tagacaaaaattaagaaagcagagattcttgagtaacctcactgaccacttttagccgtgtctctgttaaatgtagttagagatttgttaaatc-tagtt |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| ||||| |
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| T |
33814211 |
tagacaaaaattaagaaagcagagattcttgagtaacctcactgaccacttttagccgggtctctgttaaatgtagttagagatctgttaaatcttagtt |
33814310 |
T |
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| Q |
308 |
gaagtttgttaaaggtagtttcaagctagatagtattaagtgcaagttacttaagatttttatcttagtaaggatcactgtattataatagacttttcta |
407 |
Q |
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| T |
33814311 |
gaagtttgttaaaggtagtttcaagctggttaggattaagtgcaagttacttaagatttttatcctagtaaggatcgctgtattataatagacttttcta |
33814410 |
T |
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| Q |
408 |
attgaatcaattctaagcataatcaatctttctctcaatttatttttca |
456 |
Q |
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| T |
33814411 |
attgaatcaattctaagcataattaatctttctctcaatttatttttca |
33814459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 426 - 455
Target Start/End: Original strand, 10431096 - 10431125
Alignment:
| Q |
426 |
ataatcaatctttctctcaatttatttttc |
455 |
Q |
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| T |
10431096 |
ataatcaatctttctctcaatttatttttc |
10431125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 426 - 455
Target Start/End: Complemental strand, 45518870 - 45518841
Alignment:
| Q |
426 |
ataatcaatctttctctcaatttatttttc |
455 |
Q |
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| T |
45518870 |
ataatcaatctttctctcaatttatttttc |
45518841 |
T |
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