View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1907_high_33 (Length: 240)

Name: NF1907_high_33
Description: NF1907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1907_high_33
NF1907_high_33
[»] chr2 (6 HSPs)
chr2 (19-221)||(23859770-23859972)
chr2 (74-225)||(34576802-34576953)
chr2 (21-221)||(31486678-31486861)
chr2 (21-221)||(31488962-31489145)
chr2 (187-221)||(8995253-8995287)
chr2 (74-131)||(29801819-29801876)
[»] chr7 (14 HSPs)
chr7 (75-221)||(42678776-42678917)
chr7 (70-161)||(16535243-16535334)
chr7 (70-161)||(16630328-16630419)
chr7 (72-161)||(16497061-16497150)
chr7 (19-155)||(8414751-8414881)
chr7 (30-155)||(36464484-36464603)
chr7 (74-155)||(8733755-8733834)
chr7 (19-221)||(3932508-3932693)
chr7 (19-221)||(3934747-3934932)
chr7 (88-221)||(19788927-19789047)
chr7 (19-155)||(3051993-3052127)
chr7 (88-221)||(19786621-19786741)
chr7 (179-221)||(8733703-8733745)
chr7 (168-221)||(36464429-36464482)
[»] chr5 (9 HSPs)
chr5 (75-221)||(1779423-1779564)
chr5 (21-221)||(23164446-23164629)
chr5 (19-221)||(37207665-37207850)
chr5 (80-217)||(1779661-1779793)
chr5 (19-221)||(22600705-22600890)
chr5 (74-155)||(11852426-11852505)
chr5 (21-155)||(11850168-11850296)
chr5 (87-132)||(11852507-11852552)
chr5 (145-221)||(15468986-15469062)
[»] chr3 (4 HSPs)
chr3 (40-221)||(18966317-18966494)
chr3 (125-217)||(1701061-1701153)
chr3 (19-61)||(39578236-39578278)
chr3 (129-221)||(8535464-8535557)
[»] chr6 (1 HSPs)
chr6 (87-221)||(21199146-21199275)
[»] chr1 (8 HSPs)
chr1 (19-221)||(29833281-29833466)
chr1 (83-221)||(8933755-8933888)
chr1 (19-155)||(734839-734969)
chr1 (74-221)||(2404033-2404167)
chr1 (152-221)||(18353719-18353788)
chr1 (74-138)||(419215-419279)
chr1 (78-138)||(2416674-2416734)
chr1 (168-221)||(734784-734837)
[»] chr8 (8 HSPs)
chr8 (21-221)||(36377388-36377571)
chr8 (21-157)||(21268388-21268518)
chr8 (21-221)||(36379673-36379856)
chr8 (87-138)||(4876849-4876900)
chr8 (87-138)||(4879177-4879228)
chr8 (168-221)||(4876917-4876970)
chr8 (168-221)||(4879245-4879298)
chr8 (87-136)||(24519432-24519481)
[»] chr4 (9 HSPs)
chr4 (120-221)||(43179515-43179617)
chr4 (87-155)||(50856022-50856088)
chr4 (19-155)||(45166864-45166994)
chr4 (19-155)||(45161972-45162102)
chr4 (87-221)||(42468645-42468766)
chr4 (87-221)||(42470974-42471095)
chr4 (158-218)||(8739308-8739368)
chr4 (185-225)||(19429279-19429319)
chr4 (168-221)||(50855967-50856020)
[»] scaffold0312 (1 HSPs)
scaffold0312 (74-138)||(11292-11356)
[»] scaffold0050 (1 HSPs)
scaffold0050 (149-217)||(29246-29314)


Alignment Details
Target: chr2 (Bit Score: 203; Significance: 1e-111; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 19 - 221
Target Start/End: Original strand, 23859770 - 23859972
Alignment:
Q  19 gatgaagaaagatatggaacactctagaatactaatgaataatatggaattaagcctctagaacactaaagaataatatgggagtctctagaatactatg 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23859770 gatgaagaaagatatggaacactctagaatactaatgaataatatggaattaagcctctagaacactaaagaataatatgggagtctctagaatactatg 23859869  T
Q  119 aaataataaggaagctactaaacattctactaaataaaataaaattagacactagagaaatcttagcttttctagatccttctagtcttatgaactagag 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23859870 aaataataaggaagctactaaacattctactaaataaaataaaattagacactagagaaatcttagcttttctagatccttctagtcttatgaactagag 23859969  T
Q  219 tat 221  Q
    |||    
T  23859970 tat 23859972  T

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Target: chr2; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 74 - 225
Target Start/End: Complemental strand, 34576953 - 34576802
Alignment:
Q  74 ctctagaacactaaagaataatatgggagtctctagaatactatgaaataataaggaagctactaaacattctactaaataaaataaaattagacactag 173  Q
    |||||||||||||||||||||||||| |||||||| |||||||   |||||  |||||||||||  ||| ||||||||||||||||||||||  ||||||    
T  34576953 ctctagaacactaaagaataatatggaagtctctaaaatactaaagaataacgaggaagctactggacactctactaaataaaataaaattacgcactag 34576854  T
Q  174 agaaatcttagcttttctagatccttctagtcttatgaactagagtattcat 225  Q
    |||||||||| ||||||||||||||||||||| |||||||||||||||||||    
T  34576853 agaaatcttaacttttctagatccttctagtcatatgaactagagtattcat 34576802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 21 - 221
Target Start/End: Original strand, 31486678 - 31486861
Alignment:
Q  21 tgaagaaagatatggaacactctagaatactaatgaataatatggaattaagcctctagaacactaaagaataatatgggagtctctagaatactatgaa 120  Q
    |||||||  |||||||| ||||||||||||||  ||||||| |||||    |||||||||| |||| |||||||||| | |||||||||||||||| | |    
T  31486678 tgaagaataatatggaagactctagaatactagggaataatgtggaa----gcctctagaagactagagaataatatagaagtctctagaatactaggga 31486773  T
Q  121 ataataaggaagctactaaacattctactaaataaaataaaattagacactagagaaatcttagcttttctagatccttctagtcttatgaactagagta 220  Q
    |||||||||||||||||| |||  |||||||||||            |||||| ||| ||||| ||||||||||||||||||| |||||| |||||||||    
T  31486774 ataataaggaagctactagaca--ctactaaataa-----------gcactagggaagtcttaacttttctagatccttctaggcttatgtactagagta 31486860  T

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Target: chr2; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 21 - 221
Target Start/End: Original strand, 31488962 - 31489145
Alignment:
Q  21 tgaagaaagatatggaacactctagaatactaatgaataatatggaattaagcctctagaacactaaagaataatatgggagtctctagaatactatgaa 120  Q
    |||||||  |||||||| ||||||||||||||  ||||||| ||||| |    ||||| || ||||||||||||||| | |||||||||||||||| | |    
T  31488962 tgaagaataatatggaagactctagaatactagggaataatgtggaagt----ctctaaaagactaaagaataatatagaagtctctagaatactaggga 31489057  T
Q  121 ataataaggaagctactaaacattctactaaataaaataaaattagacactagagaaatcttagcttttctagatccttctagtcttatgaactagagta 220  Q
    |||||||||||||||||| |||  |||||||||||            |||||| ||| ||||||||||||||||||||||||  |||||| |||||||||    
T  31489058 ataataaggaagctactagaca--ctactaaataa-----------gcactagggaagtcttagcttttctagatccttctaagcttatgtactagagta 31489144  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 221
Target Start/End: Complemental strand, 8995287 - 8995253
Alignment:
Q  187 tttctagatccttctagtcttatgaactagagtat 221  Q
    ||||||||||||||||||| |||||||||||||||    
T  8995287 tttctagatccttctagtcatatgaactagagtat 8995253  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 74 - 131
Target Start/End: Original strand, 29801819 - 29801876
Alignment:
Q  74 ctctagaacactaaagaataatatgggagtctctagaatactatgaaataataaggaa 131  Q
    ||||||||||| ||||||||||| || ||| ||||||||||||   ||||||||||||    
T  29801819 ctctagaacaccaaagaataatagggaagtatctagaatactaaagaataataaggaa 29801876  T

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Target: chr7 (Bit Score: 71; Significance: 3e-32; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 75 - 221
Target Start/End: Complemental strand, 42678917 - 42678776
Alignment:
Q  75 tctagaacactaaagaataatatgggagtctctagaatactatgaaataataaggaagctactaaacattctactaaataaaataaaattagacactaga 174  Q
    ||||||| ||||||||||||||||| |||||||| ||||||||| ||||||||||||||||||| ||| ||||||||||||||||||      ||||||     
T  42678917 tctagaaaactaaagaataatatggaagtctctaaaatactatggaataataaggaagctactagacactctactaaataaaataaa-----gcactagg 42678823  T
Q  175 gaaatcttagcttttctagatccttctagtcttatgaactagagtat 221  Q
     ||||||||   ||||||||||||||||||| ||||| |||||||||    
T  42678822 aaaatcttaatgtttctagatccttctagtcatatgacctagagtat 42678776  T

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Target: chr7; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 70 - 161
Target Start/End: Complemental strand, 16535334 - 16535243
Alignment:
Q  70 aagcctctagaacactaaagaataatatgggagtctctagaatactatgaaataataaggaagctactaaacattctactaaataaaataaa 161  Q
    |||||||||||| | ||||||||||| ||| |||||||||||||||||| |||||||| |||||||||| ||| ||||||||||||||||||    
T  16535334 aagcctctagaataataaagaataatgtggaagtctctagaatactatggaataataaagaagctactagacactctactaaataaaataaa 16535243  T

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Target: chr7; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 70 - 161
Target Start/End: Original strand, 16630328 - 16630419
Alignment:
Q  70 aagcctctagaacactaaagaataatatgggagtctctagaatactatgaaataataaggaagctactaaacattctactaaataaaataaa 161  Q
    |||||||||||| | ||||||||||| ||| |||||||||||||||||| |||||||| |||||||||| ||| ||||||||||||||||||    
T  16630328 aagcctctagaataataaagaataatgtggaagtctctagaatactatggaataataaagaagctactagacactctactaaataaaataaa 16630419  T

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Target: chr7; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 72 - 161
Target Start/End: Complemental strand, 16497150 - 16497061
Alignment:
Q  72 gcctctagaacactaaagaataatatgggagtctctagaatactatgaaataataaggaagctactaaacattctactaaataaaataaa 161  Q
    |||||||||| | ||||||||||| ||| ||| |||||||||||||| ||||||||||||||||||| ||| ||||||||||||||||||    
T  16497150 gcctctagaataataaagaataatgtggaagtttctagaatactatggaataataaggaagctactagacactctactaaataaaataaa 16497061  T

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Target: chr7; HSP #5
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 19 - 155
Target Start/End: Complemental strand, 8414881 - 8414751
Alignment:
Q  19 gatgaagaaagatatggaacactctagaatactaatgaataatatggaattaagcctctagaacactaaagaataatatgggagtctctagaatactatg 118  Q
    |||||||||  |||||||| ||||||||||||||  ||||||| ||||| ||    ||||||||||||||||||||||| | |||||||||||||||| |    
T  8414881 gatgaagaataatatggaagactctagaatactagagaataatgtggaagta----tctagaacactaaagaataatatagaagtctctagaatactagg 8414786  T
Q  119 aaataataaggaagctactaaacattctactaaataa 155  Q
     |||||||||||| |||||| |||  |||||||||||    
T  8414785 gaataataaggaaactactagaca--ctactaaataa 8414751  T

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Target: chr7; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 30 - 155
Target Start/End: Complemental strand, 36464603 - 36464484
Alignment:
Q  30 atatggaacactctagaatactaatgaataatatggaattaagcctctagaacactaaagaataatatgggagtctctagaatactatgaaataataagg 129  Q
    |||||||| ||||||||||||||  ||||||| ||||| |    ||||||||||||||| |||||||| | |||||||||||||||| | ||||||||||    
T  36464603 atatggaagactctagaatactagagaataatgtggaagt----ctctagaacactaaataataatatagaagtctctagaatactagggaataataagg 36464508  T
Q  130 aagctactaaacattctactaaataa 155  Q
    ||||||||| |||  |||||||||||    
T  36464507 aagctactagaca--ctactaaataa 36464484  T

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Target: chr7; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 74 - 155
Target Start/End: Complemental strand, 8733834 - 8733755
Alignment:
Q  74 ctctagaacactaaagaataatatgggagtctctagaatactatgaaataataaggaagctactaaacattctactaaataa 155  Q
    |||||||||||||||||||||||| | |||||||||||||||| | ||||||||||||||||||| |||  |||||||||||    
T  8733834 ctctagaacactaaagaataatatagaagtctctagaatactagggaataataaggaagctactagaca--ctactaaataa 8733755  T

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Target: chr7; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 19 - 221
Target Start/End: Original strand, 3932508 - 3932693
Alignment:
Q  19 gatgaagaaagatatggaacactctagaatactaatgaataatatggaattaagcctctagaacactaaagaataatatgggagtctctagaatactatg 118  Q
    |||||||||  ||||||||  |||||||||  | | ||||||||||||| |    |||||||| ||||||||||||||||| || ||||||||||||| |    
T  3932508 gatgaagaataatatggaagtctctagaatgatgaagaataatatggaagt----ctctagaagactaaagaataatatggaagactctagaatactagg 3932603  T
Q  119 aaataataaggaagctactaaacattctactaaataaaataaaattagacactagagaaatcttagcttttctagatccttctagtcttatgaactagag 218  Q
     ||||||||||||||||||  | || |||||||||||            |||||| ||| ||||| ||||||||||||||||||| |||||| |||||||    
T  3932604 gaataataaggaagctact--agatactactaaataa-----------gcactagggaagtcttaacttttctagatccttctaggcttatgtactagag 3932690  T

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Target: chr7; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 19 - 221
Target Start/End: Original strand, 3934747 - 3934932
Alignment:
Q  19 gatgaagaaagatatggaacactctagaatactaatgaataatatggaattaagcctctagaacactaaagaataatatgggagtctctagaatactatg 118  Q
    |||||||||  ||||||||  |||||||||  | | ||||||||||||| |    |||||||| ||||||||||||||||| || ||||||||||||| |    
T  3934747 gatgaagaataatatggaagtctctagaatgatgaagaataatatggaagt----ctctagaagactaaagaataatatggaagactctagaatactagg 3934842  T
Q  119 aaataataaggaagctactaaacattctactaaataaaataaaattagacactagagaaatcttagcttttctagatccttctagtcttatgaactagag 218  Q
     ||||||||||||||||||  | || |||||||||||            |||||| ||| ||||| ||||||||||||||||||| |||||| |||||||    
T  3934843 gaataataaggaagctact--agatactactaaataa-----------gcactagggaagtcttaacttttctagatccttctaggcttatgtactagag 3934929  T

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Target: chr7; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 88 - 221
Target Start/End: Original strand, 19788927 - 19789047
Alignment:
Q  88 agaataatatgggagtctctagaatactatgaaataataaggaagctactaaacattctactaaataaaataaaattagacactagagaaatcttagctt 187  Q
    |||||||| ||| |||||||||||||||| | ||||||||||||||||||| |||  |||||||||||            |||||| ||| ||||| |||    
T  19788927 agaataatgtggaagtctctagaatactagggaataataaggaagctactagaca--ctactaaataa-----------gcactagggaagtcttaactt 19789013  T
Q  188 ttctagatccttctagtcttatgaactagagtat 221  Q
    |||||||||||||||| |||||| ||||||||||    
T  19789014 ttctagatccttctaggcttatgtactagagtat 19789047  T

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Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 19 - 155
Target Start/End: Original strand, 3051993 - 3052127
Alignment:
Q  19 gatgaagaaagatatggaacactctagaatactaatgaataatatggaattaagcctctagaacactaaagaataatatgggagtctctagaatac---- 114  Q
    |||||||||  |||||||| ||||||||||||||  ||||||| | ||| |    ||||| |||||||||||||||||| | ||||||||||||||        
T  3051993 gatgaagaataatatggaagactctagaatactagagaataatgtcgaagt----ctctataacactaaagaataatatagaagtctctagaatactaga 3052088  T
Q  115 tatgaaataataaggaagctactaaacattctactaaataa 155  Q
    ||  |||||||||||||||||||| |||  |||||||||||    
T  3052089 taataaataataaggaagctactagaca--ctactaaataa 3052127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 88 - 221
Target Start/End: Original strand, 19786621 - 19786741
Alignment:
Q  88 agaataatatgggagtctctagaatactatgaaataataaggaagctactaaacattctactaaataaaataaaattagacactagagaaatcttagctt 187  Q
    |||||||| ||| ||||||||||||| || | ||||||||||||||||||| |||  |||||||||||            |||||| ||| ||||| |||    
T  19786621 agaataatgtggaagtctctagaatattagggaataataaggaagctactagaca--ctactaaataag-----------cactagggaagtcttaactt 19786707  T
Q  188 ttctagatccttctagtcttatgaactagagtat 221  Q
    |||||||||||||||| |||||| ||||||||||    
T  19786708 ttctagatccttctaggcttatgtactagagtat 19786741  T

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Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 221
Target Start/End: Complemental strand, 8733745 - 8733703
Alignment:
Q  179 tcttagcttttctagatccttctagtcttatgaactagagtat 221  Q
    ||||| ||||||||||||||||||| |||||| ||||||||||    
T  8733745 tcttaacttttctagatccttctaggcttatgtactagagtat 8733703  T

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Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 168 - 221
Target Start/End: Complemental strand, 36464482 - 36464429
Alignment:
Q  168 cactagagaaatcttagcttttctagatccttctagtcttatgaactagagtat 221  Q
    |||||| ||| ||||  |||||||||||||||||||| ||||| ||||||||||    
T  36464482 cactagggaagtcttgacttttctagatccttctagttttatgtactagagtat 36464429  T

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Target: chr5 (Bit Score: 71; Significance: 3e-32; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 75 - 221
Target Start/End: Complemental strand, 1779564 - 1779423
Alignment:
Q  75 tctagaacactaaagaataatatgggagtctctagaatactatgaaataataaggaagctactaaacattctactaaataaaataaaattagacactaga 174  Q
    ||||||| ||||||||||||||| | |||||||| ||||||||| ||||||||||||||||||| ||| || |||||||||||||||      |||||||    
T  1779564 tctagaaaactaaagaataatatagaagtctctaaaatactatggaataataaggaagctactagacactccactaaataaaataaa-----gcactaga 1779470  T
Q  175 gaaatcttagcttttctagatccttctagtcttatgaactagagtat 221  Q
     ||||||||   ||||||||||||||||||| |||||||||||||||    
T  1779469 aaaatcttaatgtttctagatccttctagtcatatgaactagagtat 1779423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 21 - 221
Target Start/End: Complemental strand, 23164629 - 23164446
Alignment:
Q  21 tgaagaaagatatggaacactctagaatactaatgaataatatggaattaagcctctagaacactaaagaataatatgggagtctctagaatactatgaa 120  Q
    |||||||  |||||||| ||||||||||||||  ||||||| ||||| |    |||||||| ||||||||||||||| | |||||||||||||||| | |    
T  23164629 tgaagaataatatggaagactctagaatactagggaataatgtggaagt----ctctagaagactaaagaataatatagaagtctctagaatactaggga 23164534  T
Q  121 ataataaggaagctactaaacattctactaaataaaataaaattagacactagagaaatcttagcttttctagatccttctagtcttatgaactagagta 220  Q
    |||||||||||||||||| |||  |||||||||||           ||||||| ||| ||||| ||||||||||||||||||| |||||| |||||||||    
T  23164533 ataataaggaagctactagaca--ctactaaataa-----------acactagggaagtcttaacttttctagatccttctaggcttatgtactagagta 23164447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 19 - 221
Target Start/End: Original strand, 37207665 - 37207850
Alignment:
Q  19 gatgaagaaagatatggaacactctagaatactaatgaataatatggaattaagcctctagaacactaaagaataatatgggagtctctagaatactatg 118  Q
    |||||||||  |||||||| ||||||||||||||  ||||||| ||||| |    |||||||| ||||||||||||||| | ||||| |||||||||| |    
T  37207665 gatgaagaataatatggaagactctagaatactagggaataatgtggaagt----ctctagaagactaaagaataatatagaagtctgtagaatactagg 37207760  T
Q  119 aaataataaggaagctactaaacattctactaaataaaataaaattagacactagagaaatcttagcttttctagatccttctagtcttatgaactagag 218  Q
     ||||||||||||||||||| |||  |||||||||||            |||||| ||| ||||| ||||||||||||||||||| |||||| |||||||    
T  37207761 gaataataaggaagctactagaca--ctactaaataa-----------gcactagggaagtcttaacttttctagatccttctaggcttatgtactagag 37207847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 80 - 217
Target Start/End: Complemental strand, 1779793 - 1779661
Alignment:
Q  80 aacactaaagaataatatgggagtctctagaatactatgaaataataaggaagctactaaacattctactaaataaaataaaattagacactagagaaat 179  Q
    |||||||||||||||||||| ||||||||||||||||   ||||||   |||||||||| ||||||||||  ||||||||||      | |||| |||||    
T  1779793 aacactaaagaataatatggaagtctctagaatactaaagaataatgtcgaagctactagacattctactggataaaataaa-----gcgctagggaaat 1779699  T
Q  180 cttagcttttctagatccttctagtcttatgaactaga 217  Q
    ||||   ||||||||||||||||||| |||||||||||    
T  1779698 cttaatgtttctagatccttctagtcatatgaactaga 1779661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 19 - 221
Target Start/End: Original strand, 22600705 - 22600890
Alignment:
Q  19 gatgaagaaagatatggaacactctagaatactaatgaataatatggaattaagcctctagaacactaaagaataatatgggagtctctagaatactatg 118  Q
    |||||||||  |||||||| ||||||||||| ||  ||||||| ||||| |    |||||||| |||||| |||||||| | ||||||||||||||||||    
T  22600705 gatgaagaataatatggaagactctagaatattagggaataatgtggaagt----ctctagaagactaaataataatatagaagtctctagaatactatg 22600800  T
Q  119 aaataataaggaagctactaaacattctactaaataaaataaaattagacactagagaaatcttagcttttctagatccttctagtcttatgaactagag 218  Q
     ||||||||| ||||||||  |||  |||||||||||            |||||| ||| ||||| ||||||||||||||||||| |||||| |||||||    
T  22600801 gaataataagaaagctacttgaca--ctactaaataa-----------gcactagggaagtcttaacttttctagatccttctaggcttatgtactagag 22600887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 74 - 155
Target Start/End: Complemental strand, 11852505 - 11852426
Alignment:
Q  74 ctctagaacactaaagaataatatgggagtctctagaatactatgaaataataaggaagctactaaacattctactaaataa 155  Q
    |||||||| ||||||||||||||| | |||||||||||||||| | ||||||||||||||||||| |||  |||||||||||    
T  11852505 ctctagaagactaaagaataatatagaagtctctagaatactagggaataataaggaagctactagaca--ctactaaataa 11852426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 21 - 155
Target Start/End: Complemental strand, 11850296 - 11850168
Alignment:
Q  21 tgaagaaagatatggaacactctagaatactaatgaataatatggaattaagcctctagaacactaaagaataatatgggagtctctagaatactatgaa 120  Q
    |||||||  |||||||| ||||| ||||||||  ||||||| ||||| |    |||||||| ||||||||||||||| | |||||||| ||||||| | |    
T  11850296 tgaagaataatatggaagactcttgaatactatggaataatgtggaagt----ctctagaagactaaagaataatatagaagtctctaaaatactaggga 11850201  T
Q  121 ataataaggaagctactaaacattctactaaataa 155  Q
    |||||||| ||||||||| |||  |||||||||||    
T  11850200 ataataagaaagctactagaca--ctactaaataa 11850168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 87 - 132
Target Start/End: Complemental strand, 11852552 - 11852507
Alignment:
Q  87 aagaataatatgggagtctctagaatactatgaaataataaggaag 132  Q
    ||||||||||||| || |||||||||||||||||||||| ||||||    
T  11852552 aagaataatatggaagactctagaatactatgaaataatgaggaag 11852507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 221
Target Start/End: Original strand, 15468986 - 15469062
Alignment:
Q  145 ctactaaataaaataaaattagacactagagaaatcttagcttttctagatccttctagtcttatgaactagagtat 221  Q
    ||||||||||| ||||||| |  ||||||  |||| ||| ||||||||||||| ||||||| |||||| ||| ||||    
T  15468986 ctactaaataagataaaataaagcactaggaaaatattaacttttctagatccatctagtcatatgaattagtgtat 15469062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 69; Significance: 4e-31; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 40 - 221
Target Start/End: Complemental strand, 18966494 - 18966317
Alignment:
Q  40 ctctagaatactaatgaataatatggaattaagcctctagaacactaaagaataatatgggagtctctagaatactatgaaataataaggaagctactaa 139  Q
    |||||||||||||| ||||||| ||||| |    ||||||||||| ||||||||||| || ||||||||||||||||   |||||||||| ||||||||     
T  18966494 ctctagaatactaaagaataatgtggaagt----ctctagaacaccaaagaataatagggaagtctctagaatactagataataataaggtagctactag 18966399  T
Q  140 acattctactaaataaaataaaattagacactagagaaatcttagcttttctagatccttctagtcttatgaactagagtat 221  Q
    | | |||||||||| |||||||||||  ||||||  ||||||||   ||||||||||||||||||| || | ||||||||||    
T  18966398 atactctactaaatgaaataaaattaagcactaggaaaatcttaatgtttctagatccttctagtcatacgtactagagtat 18966317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 125 - 217
Target Start/End: Original strand, 1701061 - 1701153
Alignment:
Q  125 taaggaagctactaaacattctactaaataaaataaaattagacactagagaaatcttagcttttctagatccttctagtcttatgaactaga 217  Q
    |||||||||| ||| ||| | |||||||||| ||||||||| ||||||| ||||||||| ||||||||||||||||||||| |||||| ||||    
T  1701061 taaggaagcttctagacactgtactaaataagataaaattaaacactagggaaatcttaacttttctagatccttctagtcatatgaattaga 1701153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 61
Target Start/End: Original strand, 39578236 - 39578278
Alignment:
Q  19 gatgaagaaagatatggaacactctagaatactaatgaataat 61  Q
    ||||||||| ||||||||| ||||||||||||||| |||||||    
T  39578236 gatgaagaatgatatggaagactctagaatactaaagaataat 39578278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 129 - 221
Target Start/End: Original strand, 8535464 - 8535557
Alignment:
Q  129 gaagctactaaacattctactaaataaaataaaattagacactagagaaatctta-gcttttctagatccttctagtcttatgaactagagtat 221  Q
    |||||| ||| ||| |||||||||||| ||||||| |  ||||||| ||||||||   |||| ||||||||||||||| ||| ||||| |||||    
T  8535464 gaagcttctagacactctactaaataagataaaataaagcactagaaaaatcttatttttttttagatccttctagtcatataaactaaagtat 8535557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 67; Significance: 7e-30; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 87 - 221
Target Start/End: Original strand, 21199146 - 21199275
Alignment:
Q  87 aagaataatatgggagtctctagaatactatgaaataataaggaagctactaaacattctactaaataaaataaaattagacactagagaaatcttagct 186  Q
    ||||||||||||| |||||||||||||||||| ||||||||||||||||||| ||| ||||||||||||||||||      ||||||  ||||||||       
T  21199146 aagaataatatggaagtctctagaatactatggaataataaggaagctactatacactctactaaataaaataaag-----cactagttaaatcttaatg 21199240  T
Q  187 tttctagatccttctagtcttatgaactagagtat 221  Q
    ||||||||||||||||||| |||||||| ||||||    
T  21199241 tttctagatccttctagtcatatgaactggagtat 21199275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 65; Significance: 1e-28; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 19 - 221
Target Start/End: Complemental strand, 29833466 - 29833281
Alignment:
Q  19 gatgaagaaagatatggaacactctagaatactaatgaataatatggaattaagcctctagaacactaaagaataatatgggagtctctagaatactatg 118  Q
    |||||||||  |||||||| ||||||||||||||  ||||||| ||||| |    |||||||||||||||||||||||| | |||||||||||||||| |    
T  29833466 gatgaagaataatatggaagactctagaatactagagaataatgtggaagt----ctctagaacactaaagaataatatagaagtctctagaatactagg 29833371  T
Q  119 aaataataaggaagctactaaacattctactaaataaaataaaattagacactagagaaatcttagcttttctagatccttctagtcttatgaactagag 218  Q
     ||||||||||||||||||| |||  |||||||||||            |||||| ||| ||||| ||||||||||||||||||| |||||| |||||||    
T  29833370 gaataataaggaagctactagaca--ctactaaataa-----------gcactagggaagtcttaacttttctagatccttctaggcttatgtactagag 29833284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 83 - 221
Target Start/End: Complemental strand, 8933888 - 8933755
Alignment:
Q  83 actaaagaataatatgggagtctctagaatactatgaaataataaggaagctactaaacattctactaaataaaataaaattagacactagagaaatctt 182  Q
    ||||||||| ||||||| |||||||| ||||||||| |||||||||||||||| || ||| ||||||||||||||||||      ||||||  |||||||    
T  8933888 actaaagaaaaatatggaagtctctaaaatactatggaataataaggaagctattagacactctactaaataaaataaag-----cactaggaaaatctt 8933794  T
Q  183 agcttttctagatccttctagtcttatgaactagagtat 221  Q
    |   ||||||||||||||||||| |||||||||||||||    
T  8933793 aatgtttctagatccttctagtcatatgaactagagtat 8933755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 19 - 155
Target Start/End: Complemental strand, 734969 - 734839
Alignment:
Q  19 gatgaagaaagatatggaacactctagaatactaatgaataatatggaattaagcctctagaacactaaagaataatatgggagtctctagaatactatg 118  Q
    |||||||||  |||||||| ||||||||||||||  ||||||| ||||| |    || ||||| ||||||||||||||| | |||||||||||||||| |    
T  734969 gatgaagaataatatggaagactctagaatactagggaataatgtggaagt----ctttagaagactaaagaataatatagaagtctctagaatactagg 734874  T
Q  119 aaataataaggaagctactaaacattctactaaataa 155  Q
     ||||| ||||||||||||| |||  |||||||||||    
T  734873 gaataacaaggaagctactagaca--ctactaaataa 734839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 74 - 221
Target Start/End: Complemental strand, 2404167 - 2404033
Alignment:
Q  74 ctctagaacactaaagaataatatgggagtctctagaatactatgaaataataaggaagctactaaacattctactaaataaaataaaattagacactag 173  Q
    |||||||| ||||||||||||||| | |||||||||||||||| | ||||||||||||||||||  | || |||||||||||            ||||||    
T  2404167 ctctagaagactaaagaataatatagaagtctctagaatactagggaataataaggaagctact--agatactactaaataa-----------gcactag 2404081  T
Q  174 agaaatcttagcttttctagatccttctagtcttatgaactagagtat 221  Q
     ||| ||||| ||||||||||||||||||| |||||| ||||||||||    
T  2404080 ggaagtcttaacttttctagatccttctaggcttatgtactagagtat 2404033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 152 - 221
Target Start/End: Original strand, 18353719 - 18353788
Alignment:
Q  152 ataaaataaaattagacactagagaaatcttagcttttctagatccttctagtcttatgaactagagtat 221  Q
    |||||||||||||   ||||||  |||||||| ||||||||||||||||||||| |||||||||||||||    
T  18353719 ataaaataaaattgagcactaggaaaatcttatcttttctagatccttctagtcatatgaactagagtat 18353788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 74 - 138
Target Start/End: Complemental strand, 419279 - 419215
Alignment:
Q  74 ctctagaacactaaagaataatatgggagtctctagaatactatgaaataataaggaagctacta 138  Q
    |||||||||||||||||||||||||| |||||||| |||  ||   |||||||||||||||||||    
T  419279 ctctagaacactaaagaataatatggaagtctctataatgttaaagaataataaggaagctacta 419215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 78 - 138
Target Start/End: Complemental strand, 2416734 - 2416674
Alignment:
Q  78 agaacactaaagaataatatgggagtctctagaatactatgaaataataaggaagctacta 138  Q
    |||| |||| |||||||||| | | |||||||||||||| | |||||||||||||||||||    
T  2416734 agaagactacagaataatatagaactctctagaatactagggaataataaggaagctacta 2416674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 168 - 221
Target Start/End: Complemental strand, 734837 - 734784
Alignment:
Q  168 cactagagaaatcttagcttttctagatccttctagtcttatgaactagagtat 221  Q
    |||||| ||| ||||| |||||||||||||||||||  ||||| ||||||||||    
T  734837 cactagggaagtcttaacttttctagatccttctaggtttatgtactagagtat 734784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 63; Significance: 2e-27; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 21 - 221
Target Start/End: Complemental strand, 36377571 - 36377388
Alignment:
Q  21 tgaagaaagatatggaacactctagaatactaatgaataatatggaattaagcctctagaacactaaagaataatatgggagtctctagaatactatgaa 120  Q
    |||||||  |||||||| ||||||||||||||| ||||||| ||||| |    |||||||| ||||||||||||||| | |||||||||||||||| | |    
T  36377571 tgaagaataatatggaagactctagaatactaaggaataatgtggaagt----ctctagaagactaaagaataatatagaagtctctagaatactaggga 36377476  T
Q  121 ataataaggaagctactaaacattctactaaataaaataaaattagacactagagaaatcttagcttttctagatccttctagtcttatgaactagagta 220  Q
    |||||||||||||||||| |||  |||||||||||            |||||| ||| ||||| ||||||||||||||||||| |||||| |||||||||    
T  36377475 ataataaggaagctactagaca--ctactaaataa-----------gcactagggaagtcttaacttttctagatccttctaggcttatgtactagagta 36377389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 21 - 157
Target Start/End: Complemental strand, 21268518 - 21268388
Alignment:
Q  21 tgaagaaagatatggaacactctagaatactaatgaataatatggaattaagcctctagaacactaaagaataatatgggagtctctagaatactatgaa 120  Q
    |||||||  |||||||| ||||||||||||||  ||||||| ||||| |    |||||||||||||||||||||||| | |||||||||||||||| | |    
T  21268518 tgaagaataatatggaagactctagaatactagagaataatgtggaagt----ctctagaacactaaagaataatatagaagtctctagaatactaggga 21268423  T
Q  121 ataataaggaagctactaaacattctactaaataaaa 157  Q
    |||||||||||||||||| |||  |||||||||||||    
T  21268422 ataataaggaagctactagaca--ctactaaataaaa 21268388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 21 - 221
Target Start/End: Complemental strand, 36379856 - 36379673
Alignment:
Q  21 tgaagaaagatatggaacactctagaatactaatgaataatatggaattaagcctctagaacactaaagaataatatgggagtctctagaatactatgaa 120  Q
    |||||||  |||||||| ||||||||||||||  ||||||| ||||| |    |||||||| ||||||||||||||| | |||||||||||||||| | |    
T  36379856 tgaagaataatatggaagactctagaatactagggaataatgtggaagt----ctctagaagactaaagaataatatagaagtctctagaatactaggga 36379761  T
Q  121 ataataaggaagctactaaacattctactaaataaaataaaattagacactagagaaatcttagcttttctagatccttctagtcttatgaactagagta 220  Q
    |||||||||||||||||| |||  |||||||||||            |||||| ||| ||||| ||||||||||||||||||| |||||| |||||||||    
T  36379760 ataataaggaagctactagaca--ctactaaataa-----------gcactagggaagtcttaacttttctagatccttctaggcttatgtactagagta 36379674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 87 - 138
Target Start/End: Original strand, 4876849 - 4876900
Alignment:
Q  87 aagaataatatgggagtctctagaatactatgaaataataaggaagctacta 138  Q
    ||||||||||||| || ||||||||||||  | |||||||||||||||||||    
T  4876849 aagaataatatggaagactctagaatactggggaataataaggaagctacta 4876900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 87 - 138
Target Start/End: Original strand, 4879177 - 4879228
Alignment:
Q  87 aagaataatatgggagtctctagaatactatgaaataataaggaagctacta 138  Q
    ||||||||||||| || ||||||||||||  | |||||||||||||||||||    
T  4879177 aagaataatatggaagactctagaatactggggaataataaggaagctacta 4879228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 168 - 221
Target Start/End: Original strand, 4876917 - 4876970
Alignment:
Q  168 cactagagaaatcttagcttttctagatccttctagtcttatgaactagagtat 221  Q
    |||||| ||| ||||| ||||||||||||||||||| |||||| |||| |||||    
T  4876917 cactagggaagtcttaacttttctagatccttctaggcttatgtactatagtat 4876970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 168 - 221
Target Start/End: Original strand, 4879245 - 4879298
Alignment:
Q  168 cactagagaaatcttagcttttctagatccttctagtcttatgaactagagtat 221  Q
    |||||| ||| ||||| ||||||||||||||||||| |||||| |||| |||||    
T  4879245 cactagggaagtcttaacttttctagatccttctaggcttatgtactatagtat 4879298  T

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Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 87 - 136
Target Start/End: Complemental strand, 24519481 - 24519432
Alignment:
Q  87 aagaataatatgggagtctctagaatactatgaaataataaggaagctac 136  Q
    ||||||||||||| || ||||||||||||  | |||||||||||||||||    
T  24519481 aagaataatatggaagactctagaatactggggaataataaggaagctac 24519432  T

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Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 120 - 221
Target Start/End: Original strand, 43179515 - 43179617
Alignment:
Q  120 aataataaggaagctactaaacattctactaaataaaat-aaaattagacactagagaaatcttagcttttctagatccttctagtcttatgaactagag 218  Q
    ||||||||||||||||||| ||| ||||||||||||||| |||||||  || || |||||||||| ||||| | ||||||||||||| ||||||||||||    
T  43179515 aataataaggaagctactagacactctactaaataaaataaaaattaagcattaaagaaatcttaacttttttggatccttctagtcatatgaactagag 43179614  T
Q  219 tat 221  Q
    |||    
T  43179615 tat 43179617  T

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Target: chr4; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 87 - 155
Target Start/End: Complemental strand, 50856088 - 50856022
Alignment:
Q  87 aagaataatatgggagtctctagaatactatgaaataataaggaagctactaaacattctactaaataa 155  Q
    ||||||||||||| |||||||||||||||||| ||||||||||||||||||| |||  |||||||||||    
T  50856088 aagaataatatggaagtctctagaatactatggaataataaggaagctactagaca--ctactaaataa 50856022  T

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Target: chr4; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 19 - 155
Target Start/End: Original strand, 45166864 - 45166994
Alignment:
Q  19 gatgaagaaagatatggaacactctagaatactaatgaataatatggaattaagcctctagaacactaaagaataatatgggagtctctagaatactatg 118  Q
    |||||||||  ||||||||  |||||||||  | | ||||||||||||| |    |||||||| ||||||||||||||| | ||||| |||||||||| |    
T  45166864 gatgaagaataatatggaagtctctagaatggtgaagaataatatggaagt----ctctagaagactaaagaataatatagaagtctttagaatactagg 45166959  T
Q  119 aaataataaggaagctactaaacattctactaaataa 155  Q
     ||||||||||||||||||| |||  |||||||||||    
T  45166960 gaataataaggaagctactagaca--ctactaaataa 45166994  T

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Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 19 - 155
Target Start/End: Original strand, 45161972 - 45162102
Alignment:
Q  19 gatgaagaaagatatggaacactctagaatactaatgaataatatggaattaagcctctagaacactaaagaataatatgggagtctctagaatactatg 118  Q
    |||||||||  ||||||||  |||||||||  | | ||||||||||||| |    |||||||| ||||||||||||||| | ||||| |||||||||| |    
T  45161972 gatgaagaataatatggaagtctctagaatggtgaagaataatatggaagt----ctctagaagactaaagaataatatagaagtctttagaatactagg 45162067  T
Q  119 aaataataaggaagctactaaacattctactaaataa 155  Q
     ||||||||| ||||||||| |||  |||||||||||    
T  45162068 gaataataagaaagctactagaca--ctactaaataa 45162102  T

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Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 87 - 221
Target Start/End: Complemental strand, 42468766 - 42468645
Alignment:
Q  87 aagaataatatgggagtctctagaatactatgaaataataaggaagctactaaacattctactaaataaaataaaattagacactagagaaatcttagct 186  Q
    ||||||||||||| || ||||||||||||  | ||||||||||||||||||  | || |||||||||||            |||||| ||| ||||| ||    
T  42468766 aagaataatatggaagactctagaatactggggaataataaggaagctact--agatactactaaataa-----------gcactagggaagtcttaact 42468680  T
Q  187 tttctagatccttctagtcttatgaactagagtat 221  Q
    ||||||||||||||||| |||||| ||||||||||    
T  42468679 tttctagatccttctaggcttatgtactagagtat 42468645  T

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Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 87 - 221
Target Start/End: Complemental strand, 42471095 - 42470974
Alignment:
Q  87 aagaataatatgggagtctctagaatactatgaaataataaggaagctactaaacattctactaaataaaataaaattagacactagagaaatcttagct 186  Q
    ||||||||||||| || ||||||||||||  | ||||||||||||||||||  | || |||||||||||            |||||| ||| ||||| ||    
T  42471095 aagaataatatggaagactctagaatacttgggaataataaggaagctact--agatactactaaataa-----------gcactagggaagtcttaact 42471009  T
Q  187 tttctagatccttctagtcttatgaactagagtat 221  Q
    ||||||||||||||||| |||||| ||||||||||    
T  42471008 tttctagatccttctaggcttatgtactagagtat 42470974  T

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Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 158 - 218
Target Start/End: Original strand, 8739308 - 8739368
Alignment:
Q  158 taaaattagacactagagaaatcttagcttttctagatccttctagtcttatgaactagag 218  Q
    ||||||||  |||||| |||||||||   ||||||||||||||||||| ||||||||||||    
T  8739308 taaaattatgcactagggaaatcttaatgtttctagatccttctagtcatatgaactagag 8739368  T

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Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 185 - 225
Target Start/End: Complemental strand, 19429319 - 19429279
Alignment:
Q  185 cttttctagatccttctagtcttatgaactagagtattcat 225  Q
    |||||||||||||||||||| ||||| ||||||||||||||    
T  19429319 cttttctagatccttctagttttatgtactagagtattcat 19429279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 168 - 221
Target Start/End: Complemental strand, 50856020 - 50855967
Alignment:
Q  168 cactagagaaatcttagcttttctagatccttctagtcttatgaactagagtat 221  Q
    |||||| ||| ||||| ||||||||||||||||||| |||||| || |||||||    
T  50856020 cactagggaagtcttaacttttctagatccttctaggcttatgtaccagagtat 50855967  T

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Target: scaffold0312 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0312
Description:

Target: scaffold0312; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 74 - 138
Target Start/End: Original strand, 11292 - 11356
Alignment:
Q  74 ctctagaacactaaagaataatatgggagtctctagaatactatgaaataataaggaagctacta 138  Q
    |||||||||||||||||||||||||| |||||||| |||  ||   |||||||||||||||||||    
T  11292 ctctagaacactaaagaataatatggaagtctctataatgttaaagaataataaggaagctacta 11356  T

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Target: scaffold0050 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 217
Target Start/End: Original strand, 29246 - 29314
Alignment:
Q  149 taaataaaataaaattagacactagagaaatcttagcttttctagatccttctagtcttatgaactaga 217  Q
    ||||| |||| ||||||  |||||| |||||||||   ||||||||||||||||||| |||| ||||||    
T  29246 taaattaaattaaattaagcactagggaaatcttaatgtttctagatccttctagtcatatgtactaga 29314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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