View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1907_high_34 (Length: 240)

Name: NF1907_high_34
Description: NF1907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1907_high_34
NF1907_high_34
[»] chr2 (11 HSPs)
chr2 (15-240)||(23859953-23860178)
chr2 (15-240)||(34576613-34576825)
chr2 (15-191)||(42275565-42275740)
chr2 (15-191)||(42277791-42277966)
chr2 (15-183)||(31489174-31489344)
chr2 (15-183)||(31486890-31487060)
chr2 (16-190)||(29801980-29802152)
chr2 (15-155)||(8995079-8995210)
chr2 (15-107)||(5164160-5164252)
chr2 (15-67)||(39816098-39816150)
chr2 (15-63)||(15730042-15730090)
[»] chr4 (12 HSPs)
chr4 (15-236)||(19429085-19429298)
chr4 (15-191)||(13774150-13774327)
chr4 (15-191)||(13776448-13776624)
chr4 (15-237)||(42468448-42468661)
chr4 (15-237)||(42470777-42470990)
chr4 (15-236)||(45162142-45162355)
chr4 (128-240)||(43179598-43179710)
chr4 (15-236)||(45167034-45167247)
chr4 (18-190)||(8739393-8739550)
chr4 (15-190)||(50855780-50855945)
chr4 (116-240)||(24908157-24908280)
chr4 (35-96)||(8747480-8747541)
[»] chr5 (13 HSPs)
chr5 (15-206)||(21743606-21743788)
chr5 (116-240)||(1779318-1779442)
chr5 (15-190)||(11849926-11850091)
chr5 (15-237)||(22600874-22601078)
chr5 (15-190)||(11852184-11852349)
chr5 (15-190)||(37215463-37215629)
chr5 (116-237)||(37207834-37207946)
chr5 (116-237)||(23164350-23164462)
chr5 (15-85)||(15469179-15469249)
chr5 (151-240)||(1779587-1779676)
chr5 (115-156)||(1779180-1779221)
chr5 (15-67)||(23164263-23164315)
chr5 (15-67)||(37208009-37208061)
[»] chr1 (9 HSPs)
chr1 (15-237)||(29833085-29833297)
chr1 (15-191)||(10909107-10909283)
chr1 (15-240)||(8933558-8933774)
chr1 (15-191)||(10911351-10911526)
chr1 (16-191)||(13011697-13011871)
chr1 (15-236)||(734588-734799)
chr1 (15-237)||(2403844-2404049)
chr1 (15-190)||(2409966-2410133)
chr1 (15-190)||(29833872-29834037)
[»] chr3 (4 HSPs)
chr3 (15-191)||(4530834-4531011)
chr3 (15-186)||(4533136-4533308)
chr3 (115-189)||(18966220-18966294)
chr3 (120-240)||(1701138-1701258)
[»] chr7 (20 HSPs)
chr7 (15-190)||(8414499-8414675)
chr7 (15-237)||(8733504-8733719)
chr7 (17-237)||(19093855-19094082)
chr7 (15-190)||(3052204-3052378)
chr7 (15-191)||(8731185-8731360)
chr7 (15-237)||(3932677-3932890)
chr7 (15-237)||(3934916-3935129)
chr7 (15-240)||(42678580-42678795)
chr7 (15-190)||(36464222-36464407)
chr7 (15-164)||(18395340-18395488)
chr7 (19-159)||(21769082-21769220)
chr7 (115-191)||(28610349-28610425)
chr7 (102-237)||(19786725-19786851)
chr7 (102-237)||(19789031-19789157)
chr7 (15-98)||(16496962-16497045)
chr7 (15-98)||(16535144-16535227)
chr7 (15-98)||(16630435-16630518)
chr7 (15-64)||(19786908-19786957)
chr7 (15-64)||(19789214-19789263)
chr7 (16-60)||(42680808-42680852)
[»] scaffold0050 (2 HSPs)
scaffold0050 (15-190)||(31654-31820)
scaffold0050 (15-190)||(29339-29505)
[»] scaffold0599 (1 HSPs)
scaffold0599 (15-236)||(1579-1792)
[»] chr8 (6 HSPs)
chr8 (15-190)||(4876992-4877167)
chr8 (15-190)||(4879320-4879495)
chr8 (15-190)||(24519162-24519338)
chr8 (15-183)||(36379474-36379644)
chr8 (19-190)||(36377193-36377366)
chr8 (15-190)||(21268129-21268314)
[»] chr6 (2 HSPs)
chr6 (122-240)||(21199256-21199376)
chr6 (15-103)||(20642264-20642352)
[»] scaffold1361 (1 HSPs)
scaffold1361 (15-145)||(1-131)
[»] scaffold0098 (1 HSPs)
scaffold0098 (15-102)||(3716-3804)
[»] scaffold0008 (1 HSPs)
scaffold0008 (15-67)||(88470-88522)
[»] scaffold0045 (2 HSPs)
scaffold0045 (11-68)||(64081-64136)
scaffold0045 (11-68)||(71413-71468)


Alignment Details
Target: chr2 (Bit Score: 182; Significance: 2e-98; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 15 - 240
Target Start/End: Complemental strand, 23860178 - 23859953
Alignment:
Q  15 gacaaaaggaaaggcatagaaaatagagaaactctctaatattctcaaagaaagatattattatttaaatgtttcaatgcttgagtatcttgaatatacg 114  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23860178 gacaaaaggaaaagcatagaaaatagagaaactctctaatattctcaaagaaagatattattatttaaatgtttcaatgcttgagtatcttgaatatacg 23860079  T
Q  115 taaacacttggtggtgagccttatttatactactttaggaaggctctacactacaaactagaaatatctaaaaacatcgattacaaagaaaagtctagag 214  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| |||||| ||| || ||||||||||||| | |||||     
T  23860078 taaacacttggtggtgagccttatttatactactctaggaaggctctacattacaaactagaattatctagaaatattgattacaaagaaaggcctagaa 23859979  T
Q  215 acatgaatactctagttcataagact 240  Q
    ||||| ||||||||||||||||||||    
T  23859978 acatgcatactctagttcataagact 23859953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 15 - 240
Target Start/End: Original strand, 34576613 - 34576825
Alignment:
Q  15 gacaaaaggaaaggcatagaaaatagagaaactctctaatattctcaaagaaagatattattatttaaatgtttcaatgcttgagtatcttgaatatacg 114  Q
    ||||||||| |||| | |||||||||||||||||||||||||||||||||||||||||||||           | ||||||||| | |||| |||   |     
T  34576613 gacaaaaggtaaggtagagaaaatagagaaactctctaatattctcaaagaaagatattatt-----------tgaatgcttgaat-tcttcaatg--cc 34576698  T
Q  115 taaacacttggtggtgagccttatttatactact-ttaggaaggctctacactacaaactagaaatatctaaaaacatcgattacaaagaaaagtctaga 213  Q
    |||||||||| ||||||||||||||||||||| | |||||||||||||||| ||||||||||||||||||| |||||| |||||||||||||||||||||    
T  34576699 taaacacttgatggtgagccttatttatactaatcttaggaaggctctacattacaaactagaaatatctagaaacattgattacaaagaaaagtctaga 34576798  T
Q  214 gacatgaatactctagttcataagact 240  Q
    |||||||||||||||||||||| ||||    
T  34576799 gacatgaatactctagttcatatgact 34576825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 15 - 191
Target Start/End: Original strand, 42275565 - 42275740
Alignment:
Q  15 gacaaaaggaaaggcatagaaaatagagaaactctctaatattctcaaagaaagatattattatttaaatgtttcaatgcttgagtatcttgaatatacg 114  Q
    |||||||||||||| | ||||||||||||||| ||||||||||||||||||||  |  ||||| || |||| |||||| ||||| | | |||||| | |     
T  42275565 gacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaagaaaagttatattacttgaatgattcaatacttgattct-ttgaatgtgcc 42275663  T
Q  115 taaacacttggtggtgagccttatttatactactttaggaaggctctacactacaaactagaaatatctaaaaacat 191  Q
    ||||||||| |||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| ||||||    
T  42275664 taaacacttagtggtgagccttatttatactactctaggaaggctctacattacaaactagaaatatctagaaacat 42275740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 15 - 191
Target Start/End: Original strand, 42277791 - 42277966
Alignment:
Q  15 gacaaaaggaaaggcatagaaaatagagaaactctctaatattctcaaagaaagatattattatttaaatgtttcaatgcttgagtatcttgaatatacg 114  Q
    |||||||||||||| | ||||||||||||||| ||||||||||||||||||||  |  ||||| || |||| |||||||||||| | | |||||| | |     
T  42277791 gacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaagaaaagttatattacttgaatgattcaatgcttgattct-ttgaatgtgcc 42277889  T
Q  115 taaacacttggtggtgagccttatttatactactttaggaaggctctacactacaaactagaaatatctaaaaacat 191  Q
    ||||||||| |||||||||||||||||||||||| ||||||| ||||||| ||||||||||||||||||| ||||||    
T  42277890 taaacacttagtggtgagccttatttatactactctaggaagactctacattacaaactagaaatatctagaaacat 42277966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 15 - 183
Target Start/End: Complemental strand, 31489344 - 31489174
Alignment:
Q  15 gacaaaaggaaaggcatagaaaatagagaaactctctaatattctcaaag--aaagatattattatttaaatgtttcaatgcttgagtatcttgaatata 112  Q
    |||||||||||||| | ||||||||||||||| |||||||||||||||||  |||| ||| |||| || |||  |||||||||||| |||||||| |||     
T  31489344 gacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaaggaaaagttat-attacttgaatcattcaatgcttgattatcttgagtatg 31489246  T
Q  113 cgtaaacactt-ggtggtgagccttatttatactactttaggaaggctctacactacaaactagaaatatct 183  Q
    |  |||||||| |||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||    
T  31489245 ccaaaacacttaggtggtgagccttatttatactactttaggaaggctctccattacaaactagaaatatct 31489174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 15 - 183
Target Start/End: Complemental strand, 31487060 - 31486890
Alignment:
Q  15 gacaaaaggaaaggcatagaaaatagagaaactctctaatattctcaaag--aaagatattattatttaaatgtttcaatgcttgagtatcttgaatata 112  Q
    |||||||||||||| | ||||||||||||||| |||||||||||||||||  |||| ||| |||| || |||  |||||||||||| |||||||| |||     
T  31487060 gacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaaggaaaagttat-attacttgaatcattcaatgcttgattatcttgagtatg 31486962  T
Q  113 cgtaaacactt-ggtggtgagccttatttatactactttaggaaggctctacactacaaactagaaatatct 183  Q
    |  |||||||| ||||||||||||||||||||||||| |||||||||||| || ||||||||||||||||||    
T  31486961 ccaaaacacttaggtggtgagccttatttatactactctaggaaggctctccattacaaactagaaatatct 31486890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 16 - 190
Target Start/End: Complemental strand, 29802152 - 29801980
Alignment:
Q  16 acaaaaggaaaggcatagaaaatagagaaactctctaatattctcaaagaaagatattattatttaaatgtttcaatgcttgagtatcttgaatatacgt 115  Q
    |||||| |||||| | |||||||||  ||||||||||||||||||||| |||||||||||||||| |||| || ||| ||| | |  ||||| ||| | |    
T  29802152 acaaaatgaaaggtagagaaaatagtaaaactctctaatattctcaaa-aaagatattattatttgaatgcttgaattcttcaatg-cttgactatgcct 29802055  T
Q  116 aaacacttggtggtgagccttatttatactactttaggaaggctctacactacaaactagaaatatctaaaaaca 190  Q
    ||||||||||||||||||||||||||||||||| ||||||| |||  || ||||||||||||||||||| |||||    
T  29802054 aaacacttggtggtgagccttatttatactactctaggaagactccccattacaaactagaaatatctacaaaca 29801980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 15 - 155
Target Start/End: Original strand, 8995079 - 8995210
Alignment:
Q  15 gacaaaaggaaaggcatagaaaatagagaaactctctaatattctcaaagaaagatattattatttaaatgtttcaatgcttgagtatcttgaatatacg 114  Q
    |||||||||||||| | ||||||||||||||||||||||||||||||||||||  |  ||||| || |||| ||||||||||||||||        |||     
T  8995079 gacaaaaggaaaggtagagaaaatagagaaactctctaatattctcaaagaaaagttatattacttgaatgattcaatgcttgagtat--------tac- 8995169  T
Q  115 taaacacttggtggtgagccttatttatactactttaggaa 155  Q
     ||||||||||||| ||||||||||||||||||| ||||||    
T  8995170 aaaacacttggtggagagccttatttatactactctaggaa 8995210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 15 - 107
Target Start/End: Original strand, 5164160 - 5164252
Alignment:
Q  15 gacaaaaggaaaggcatagaaaatagagaaactctctaatattctcaaagaaagatattattatttaaatgtttcaatgcttgagtatcttga 107  Q
    |||||||||||||| | ||||||||||||||| ||||||||||||||||||||  |  ||||| || |||| |||||||||||| ||||||||    
T  5164160 gacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaagaaaagttatattacttgaatgcttcaatgcttgattatcttga 5164252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 15 - 67
Target Start/End: Original strand, 39816098 - 39816150
Alignment:
Q  15 gacaaaaggaaaggcatagaaaatagagaaactctctaatattctcaaagaaa 67  Q
    |||||||||||||| | ||||||||||||||||||||||||||||||||||||    
T  39816098 gacaaaaggaaaggtagagaaaatagagaaactctctaatattctcaaagaaa 39816150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 15 - 63
Target Start/End: Complemental strand, 15730090 - 15730042
Alignment:
Q  15 gacaaaaggaaaggcatagaaaatagagaaactctctaatattctcaaa 63  Q
    |||||||||||||| | ||||||||||||||||||||||||||||||||    
T  15730090 gacaaaaggaaaggtagagaaaatagagaaactctctaatattctcaaa 15730042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 119; Significance: 6e-61; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 15 - 236
Target Start/End: Original strand, 19429085 - 19429298
Alignment:
Q  15 gacaaaaggaaaggcatagaaaatagagaaactctctaatattctcaaagaaagatat-tattatttaaatgtttcaatgcttgagtatcttgaatatac 113  Q
    |||||||||||||| | ||||||||||||||||||||||||||||||||||||  ||| ||||| || |||| ||||||||||||||||||||||||||     
T  19429085 gacaaaaggaaaggtagagaaaatagagaaactctctaatattctcaaagaaaagtatatattacttgaatgattcaatgcttgagtatcttgaatatat 19429184  T
Q  114 gtaaacacttggtggtgagccttatttatactactttaggaaggctctacactacaaactagaaatatctaaaaacatcgattacaaagaaaagtctaga 213  Q
     |||||||||||||||||||||||||||||||||| |||| ||||||| || ||||||||||||||||||| ||         |||||||||||||||||    
T  19429185 ctaaacacttggtggtgagccttatttatactactctaggtaggctctccattacaaactagaaatatctataa---------acaaagaaaagtctaga 19429275  T
Q  214 gacatgaatactctagttcataa 236  Q
    || |||||||||||||| |||||    
T  19429276 gatatgaatactctagtacataa 19429298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 15 - 191
Target Start/End: Complemental strand, 13774327 - 13774150
Alignment:
Q  15 gacaaaaggaaaggcatagaaaatagagaaactctctaatattctcaaagaaagatattattatttaaatgtttcaatgcttgagtat-cttgaatatac 113  Q
    |||||||||||||| | ||||||||||||||| ||||||||||||||||||||  |  ||||| || |||| ||||||||||||  || ||| | ||| |    
T  13774327 gacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaagaaaagttatattacttgaatgattcaatgcttgatgatgcttcagtatgc 13774228  T
Q  114 gtaaacacttggtggtgagccttatttatactactttaggaaggctctacactacaaactagaaatatctaaaaacat 191  Q
      ||||||| ||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| ||||||    
T  13774227 caaaacactaggtggtgagccttatttatactactctaggaaggctctacattacaaactagaaatatctagaaacat 13774150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 15 - 191
Target Start/End: Complemental strand, 13776624 - 13776448
Alignment:
Q  15 gacaaaaggaaaggcatagaaaatagagaaactctctaatattctcaaa-gaaagatattattatttaaatgtttcaatgcttgagtatcttgaatatac 113  Q
    |||||||||||||| | ||||||||||||||| |||||||||||||||| ||||  |  ||||| || |||| |||||||||||| | | |||||| | |    
T  13776624 gacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaacgaaaagttatattacttgaatgattcaatgcttgattct-ttgaatgtgc 13776526  T
Q  114 gtaaacacttggtggtgagccttatttatactactttaggaaggctctacactacaaactagaaatatctaaaaacat 191  Q
     ||||||||| | |||||||||||||||||||||| |||||||||||| || ||||||||||||||||||| ||||||    
T  13776525 ctaaacacttagcggtgagccttatttatactactctaggaaggctctgcattacaaactagaaatatctagaaacat 13776448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 15 - 237
Target Start/End: Original strand, 42468448 - 42468661
Alignment:
Q  15 gacaaaaggaaaggcatagaaaatagagaaactctctaatattctcaaagaaagatattattatttaaatgtttcaatgcttgagtat-cttgaatatac 113  Q
    |||||||||||||| | ||||||||||||||| ||||||||||||||||||||  |  ||||| || |||| ||||||||||||  || ||| | ||| |    
T  42468448 gacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaagaaaagttatattacttgaatgcttcaatgcttgatgatgcttcagtatcc 42468547  T
Q  114 gtaaacacttggtggtgagccttatttatactactttaggaaggctctacactacaaactagaaatatctaaaaacatcgattacaaagaaaagtctaga 213  Q
      ||||||| | ||||||||||||||||||||||| |||||||||||| || ||||||||||||||||||| ||         |||||||||||||||||    
T  42468548 a-aaacactagatggtgagccttatttatactactctaggaaggctctccattacaaactagaaatatctagaa---------acaaagaaaagtctaga 42468637  T
Q  214 gacatgaatactctagttcataag 237  Q
    || ||| |||||||||| ||||||    
T  42468638 gatatggatactctagtacataag 42468661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 15 - 237
Target Start/End: Original strand, 42470777 - 42470990
Alignment:
Q  15 gacaaaaggaaaggcatagaaaatagagaaactctctaatattctcaaagaaagatattattatttaaatgtttcaatgcttgagtat-cttgaatatac 113  Q
    |||||||||||||| | ||||||||||||||| ||||||||||||||||||||  |  ||||| || |||| ||||||||||||  || ||| | ||| |    
T  42470777 gacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaagaaaagttatattacttgaatgcttcaatgcttgatgatgcttcagtatcc 42470876  T
Q  114 gtaaacacttggtggtgagccttatttatactactttaggaaggctctacactacaaactagaaatatctaaaaacatcgattacaaagaaaagtctaga 213  Q
      ||||||| | ||||||||||||||||||||||| |||||||||||| || ||||||||||||||||||| ||         |||||||||||||||||    
T  42470877 a-aaacactagatggtgagccttatttatactactctaggaaggctctccattacaaactagaaatatctagaa---------acaaagaaaagtctaga 42470966  T
Q  214 gacatgaatactctagttcataag 237  Q
    || ||| |||||||||| ||||||    
T  42470967 gatatggatactctagtacataag 42470990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 15 - 236
Target Start/End: Complemental strand, 45162355 - 45162142
Alignment:
Q  15 gacaaaaggaaaggcatagaaaatagagaaactctctaatattctcaaagaaagatattattatttaaatgtttcaatgcttgagtat-cttgaatatac 113  Q
    |||||||||||||| | ||||||||||||||| ||||||||||||||||||||  |  ||||| || |||| ||||||| ||||  || ||||| ||| |    
T  45162355 gacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaagaaaagttatattacttgaatgattcaatgtttgatgatgcttgagtatgc 45162256  T
Q  114 gtaaacacttggtggtgagccttatttatactactttaggaaggctctacactacaaactagaaatatctaaaaacatcgattacaaagaaaagtctaga 213  Q
      ||||||| ||||||||||||||||||||||| | ||||||| |||| || ||||||||||||||||||| ||         |||||||||||||||||    
T  45162255 caaaacactaggtggtgagccttatttatactattctaggaagactctccattacaaactagaaatatctagaa---------acaaagaaaagtctaga 45162165  T
Q  214 gacatgaatactctagttcataa 236  Q
    || ||| |||||||||| |||||    
T  45162164 gatatggatactctagtacataa 45162142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 128 - 240
Target Start/End: Complemental strand, 43179710 - 43179598
Alignment:
Q  128 gtgagccttatttatactactttaggaaggctctacactacaaactagaaatatctaaaaacatcgattacaaagaaaagtctagagacatgaatactct 227  Q
    |||||||| |||||||||||| ||| ||  |||| || ||||||||||||||||||| |||||| |||||||||||||||| |||||||||| |||||||    
T  43179710 gtgagcctaatttatactactctagaaaaactctgcattacaaactagaaatatctacaaacattgattacaaagaaaagtatagagacatggatactct 43179611  T
Q  228 agttcataagact 240  Q
    |||||||| ||||    
T  43179610 agttcatatgact 43179598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 15 - 236
Target Start/End: Complemental strand, 45167247 - 45167034
Alignment:
Q  15 gacaaaaggaaaggcatagaaaatagagaaactctctaatattctcaaagaaagatattattatttaaatgtttcaatgcttgagtat-cttgaatatac 113  Q
    |||||||||||||  |  |||||||||||||| |||||||||||| ||| |||  |  |||||||| |||| ||||||| ||||  || ||||| ||| |    
T  45167247 gacaaaaggaaagttaccgaaaatagagaaacactctaatattcttaaaaaaaagttatattatttgaatgattcaatgtttgatgatgcttgagtatgc 45167148  T
Q  114 gtaaacacttggtggtgagccttatttatactactttaggaaggctctacactacaaactagaaatatctaaaaacatcgattacaaagaaaagtctaga 213  Q
      ||||||| ||||||||||||||||||||||| | ||||||| |||| || ||||||||||||||||||| ||         |||||||||||||||||    
T  45167147 caaaacactaggtggtgagccttatttatactattctaggaagactctccattacaaactagaaatatctagaa---------acaaagaaaagtctaga 45167057  T
Q  214 gacatgaatactctagttcataa 236  Q
    || ||| |||||||||| |||||    
T  45167056 gatatggatactctagtacataa 45167034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 18 - 190
Target Start/End: Complemental strand, 8739550 - 8739393
Alignment:
Q  18 aaaaggaaaggcatagaaaatagagaaactctctaatattctcaaagaaagatattattatttaaatgtttcaatgcttgagtatcttgaatatacgtaa 117  Q
    ||||||||||  | |||||||| |||||||||||||| ||||||| |||||||||||||| || |||  ||||||| |||||||               |    
T  8739550 aaaaggaaagaaagagaaaataaagaaactctctaatgttctcaaggaaagatattattagttgaattcttcaatgattgagta---------------a 8739466  T
Q  118 acacttggtggtgagccttatttatactactttaggaaggctctacactacaaactagaaatatctaaaaaca 190  Q
    |||||||||||| |||||| ||||||| ||| ||||||||||||||| ||||||||||||||||||| |||||    
T  8739465 acacttggtggtaagccttgtttatacaactctaggaaggctctacattacaaactagaaatatctagaaaca 8739393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 15 - 190
Target Start/End: Original strand, 50855780 - 50855945
Alignment:
Q  15 gacaaaaggaaaggcatagaaaatagagaaactctctaatattctcaaagaaagatattattatttaaatgtttcaatgcttgagtatcttgaatatacg 114  Q
    |||||||||||||| | ||||||||||||||| ||||||||||||| | ||||  |  ||||| || |||| ||||||||||||  |||               
T  50855780 gacaaaaggaaaggtagagaaaatagagaaacactctaatattctcgaggaaaagttatattacttgaatgattcaatgcttgatgatcca--------- 50855870  T
Q  115 taaacacttggtggtgagccttatttatactactttaggaaggctctacactacaaactagaaatatctaaaaaca 190  Q
     ||||||| |||||||| |||||||||||||||| |||||||||||| || ||| ||||||||||||||| |||||    
T  50855871 -aaacactaggtggtgaaccttatttatactactctaggaaggctctccattaccaactagaaatatctagaaaca 50855945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 116 - 240
Target Start/End: Original strand, 24908157 - 24908280
Alignment:
Q  116 aaacacttggtggtgagccttatttatactactttaggaaggctctacactacaaactagaaatatctaaaaacatcgattacaaagaaaagtctagaga 215  Q
    |||||||||||||||| || ||||||||||||| |||||||| || ||  |||||| |||||| || || || |||  ||||| |||||||||||| |||    
T  24908157 aaacacttggtggtgaaccctatttatactactctaggaaggttccacgttacaaagtagaaagatgtagaagcatttattac-aagaaaagtctaaaga 24908255  T
Q  216 catgaatactctagttcataagact 240  Q
     ||| ||||| ||||||||| ||||    
T  24908256 tatggatactttagttcatatgact 24908280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 35 - 96
Target Start/End: Original strand, 8747480 - 8747541
Alignment:
Q  35 aaatagagaaactctctaatattctcaaagaaagatattattatttaaatgtttcaatgctt 96  Q
    |||||||||||||||||| | | ||||||||||| | ||||| ||| |||| ||||||||||    
T  8747480 aaatagagaaactctctagtttgctcaaagaaagttgttattgtttgaatgcttcaatgctt 8747541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 96; Significance: 3e-47; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 15 - 206
Target Start/End: Complemental strand, 21743788 - 21743606
Alignment:
Q  15 gacaaaaggaaaggcatagaaaatagagaaactctctaatattctcaaagaaagatattattatttaaatgtttcaatgcttgagtatcttgaatatacg 114  Q
    |||||||||||||| | ||||||||||||||||||||||||||||||||||||| |  |||||||| |||  ||||||||||||||||          |     
T  21743788 gacaaaaggaaaggtagagaaaatagagaaactctctaatattctcaaagaaagtttatattatttgaattcttcaatgcttgagtatg---------cc 21743698  T
Q  115 taaacacttggtggtgagccttatttatactactttaggaaggctctacactacaaactagaaatatctaaaaacatcgattacaaagaaaa 206  Q
    ||| |||||||||||||  ||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||    
T  21743697 taaccacttggtggtgaatcttatttatactactctaggaaggctctacactacaaactaaaaatatctaaaaacatggattacaaagaaaa 21743606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 116 - 240
Target Start/End: Original strand, 1779318 - 1779442
Alignment:
Q  116 aaacacttggtggtgagccttatttatactactttaggaaggctctacactacaaactagaaatatctaaaaacatcgattacaaagaaaagtctagaga 215  Q
    ||||||||| ||||||||||||||||||| ||| ||||||||||||||| |||||||||||| |||||| |||||| ||||||||||||| | ||||| |    
T  1779318 aaacacttgttggtgagccttatttataccactctaggaaggctctacattacaaactagaattatctagaaacattgattacaaagaaaggcctagaaa 1779417  T
Q  216 catgaatactctagttcataagact 240  Q
    |||| ||||||||||||||| ||||    
T  1779418 catggatactctagttcatatgact 1779442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 15 - 190
Target Start/End: Original strand, 11849926 - 11850091
Alignment:
Q  15 gacaaaaggaaaggcatagaaaatagagaaactctctaatattctcaaagaaagatattattatttaaatgtttcaatgcttgagtatcttgaatatacg 114  Q
    |||||||||||||| | ||||||||||||||| ||||||||||||||||||||  |  |||||||| |||| ||||||||||||  |||               
T  11849926 gacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaagaaaagttatattatttgaatgattcaatgcttgatgatcca--------- 11850016  T
Q  115 taaacacttggtggtgagccttatttatactactttaggaaggctctacactacaaactagaaatatctaaaaaca 190  Q
     ||||||| ||||||||||||||||||||||||| |||||||||||| || ||| ||||||||||||||| |||||    
T  11850017 -aaacactaggtggtgagccttatttatactactctaggaaggctctccattaccaactagaaatatctagaaaca 11850091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 15 - 237
Target Start/End: Complemental strand, 22601078 - 22600874
Alignment:
Q  15 gacaaaaggaaaggcatagaaaatagagaaactctctaatattctcaaag-aaagatattattatttaaatgtttcaatgcttgagtatcttgaatatac 113  Q
    ||||||||| |||| | ||||||||||||||||||||||||||||||||| ||||||  |||||||| |||| ||||||||||||  ||          |    
T  22601078 gacaaaagggaaggtagagaaaatagagaaactctctaatattctcaaagaaaagattatattatttgaatgcttcaatgcttgatgat----------c 22600989  T
Q  114 gtaaacacttggtggtgagccttatttatactactttaggaaggctctacactacaaactagaaatatctaaaaacatcgattacaaagaaaagtctaga 213  Q
      ||||||| ||||||||||||||||||||||||||||| ||| |||| || ||| ||||||||||||||| ||         |||||||||||||||||    
T  22600988 caaaacactaggtggtgagccttatttatactactttagcaagactctccattaccaactagaaatatctagaa---------acaaagaaaagtctaga 22600898  T
Q  214 gacatgaatactctagttcataag 237  Q
    || ||| |||||||||| ||||||    
T  22600897 gatatggatactctagtacataag 22600874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 15 - 190
Target Start/End: Original strand, 11852184 - 11852349
Alignment:
Q  15 gacaaaaggaaaggcatagaaaatagagaaactctctaatattctcaaagaaagatattattatttaaatgtttcaatgcttgagtatcttgaatatacg 114  Q
    |||||||||||||| | ||||||||||||||| ||||||||||||||||||||  |  ||||| || |||| ||||||||||||  |||               
T  11852184 gacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaagaaaagttatattacttgaatgattcaatgcttgacgatcca--------- 11852274  T
Q  115 taaacacttggtggtgagccttatttatactactttaggaaggctctacactacaaactagaaatatctaaaaaca 190  Q
     ||||||| ||||||||||||||||||||||||| |||||||||||| || ||| ||||||||||||||| |||||    
T  11852275 -aaacactaggtggtgagccttatttatactactctaggaaggctctccattaccaactagaaatatctagaaaca 11852349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 15 - 190
Target Start/End: Complemental strand, 37215629 - 37215463
Alignment:
Q  15 gacaaaaggaaaggcatagaaaatagagaaactctctaatattctcaaag-aaagatattattatttaaatgtttcaatgcttgagtatcttgaatatac 113  Q
    ||||||||| |||| | ||||||||||||||||||||||||||||||||| ||||||  |||||||| |||| |||||||||||   ||  || |         
T  37215629 gacaaaagggaaggtagagaaaatagagaaactctctaatattctcaaagaaaagattatattatttgaatgcttcaatgcttg---atgatgca----- 37215538  T
Q  114 gtaaacacttggtggtgagccttatttatactactttaggaaggctctacactacaaactagaaatatctaaaaaca 190  Q
      |||||||  |||||||||||||||||||||||| |||||||||||| || ||| ||||||||||||||| |||||    
T  37215537 --aaacactatgtggtgagccttatttatactactctaggaaggctcttcattaccaactagaaatatctagaaaca 37215463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 116 - 237
Target Start/End: Complemental strand, 37207946 - 37207834
Alignment:
Q  116 aaacacttggtggtgagccttatttatactactttaggaaggctctacactacaaactagaaatatctaaaaacatcgattacaaagaaaagtctagaga 215  Q
    ||||||| ||||||||||||||||||||||||| |||||||||||| || ||| ||||||||||||||| ||         |||||||||||||||||||    
T  37207946 aaacactaggtggtgagccttatttatactactctaggaaggctctccattaccaactagaaatatctagaa---------acaaagaaaagtctagaga 37207856  T
Q  216 catgaatactctagttcataag 237  Q
    |||| |||||||||| ||||||    
T  37207855 catggatactctagtacataag 37207834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 116 - 237
Target Start/End: Original strand, 23164350 - 23164462
Alignment:
Q  116 aaacacttggtggtgagccttatttatactactttaggaaggctctacactacaaactagaaatatctaaaaacatcgattacaaagaaaagtctagaga 215  Q
    ||||||| ||||||| ||||||||||||||||| |||||||||||| || ||| ||||||||||||||| ||         |||||||||||||||||||    
T  23164350 aaacactaggtggtgggccttatttatactactctaggaaggctctccattaccaactagaaatatctagaa---------acaaagaaaagtctagaga 23164440  T
Q  216 catgaatactctagttcataag 237  Q
     ||| |||||||||| ||||||    
T  23164441 tatggatactctagtacataag 23164462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 15 - 85
Target Start/End: Complemental strand, 15469249 - 15469179
Alignment:
Q  15 gacaaaaggaaaggcatagaaaatagagaaactctctaatattctcaaagaaagatattattatttaaatg 85  Q
    |||||||||||||| | | ||||||||||||||||||||||||||||||||||| | ||||||||| ||||    
T  15469249 gacaaaaggaaaggtaaaaaaaatagagaaactctctaatattctcaaagaaagttgttattatttgaatg 15469179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 151 - 240
Target Start/End: Original strand, 1779587 - 1779676
Alignment:
Q  151 aggaaggctctacactacaaactagaaatatctaaaaacatcgattacaaagaaaagtctagagacatgaatactctagttcataagact 240  Q
    ||||||||| |||| ||||||||||||||||||| |||||| |||||||| |||| | ||||||| | | ||| ||||||||||| ||||    
T  1779587 aggaaggctttacattacaaactagaaatatctagaaacattgattacaaggaaaggcctagagatagggatattctagttcatatgact 1779676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 115 - 156
Target Start/End: Original strand, 1779180 - 1779221
Alignment:
Q  115 taaacacttggtggtgagccttatttatactactttaggaag 156  Q
    |||||||||||||||||||||||||||||||||| |||||||    
T  1779180 taaacacttggtggtgagccttatttatactactctaggaag 1779221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 15 - 67
Target Start/End: Original strand, 23164263 - 23164315
Alignment:
Q  15 gacaaaaggaaaggcatagaaaatagagaaactctctaatattctcaaagaaa 67  Q
    ||||||||| |||| | ||||||||||||||| ||||||||||||||||||||    
T  23164263 gacaaaagggaaggtagagaaaatagagaaacactctaatattctcaaagaaa 23164315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 15 - 67
Target Start/End: Complemental strand, 37208061 - 37208009
Alignment:
Q  15 gacaaaaggaaaggcatagaaaatagagaaactctctaatattctcaaagaaa 67  Q
    ||||||||| |||| | ||||||||||||||||||||||||||||| ||||||    
T  37208061 gacaaaagggaaggtagagaaaatagagaaactctctaatattctcgaagaaa 37208009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 87; Significance: 8e-42; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 15 - 237
Target Start/End: Original strand, 29833085 - 29833297
Alignment:
Q  15 gacaaaaggaaaggcatagaaaatagagaaactctctaatattctcaaagaaagatattattatttaaatgtttcaatgcttgagtatcttgaatatacg 114  Q
    ||||||||| |||| | ||||||||||||||| ||||||||||||||||||||  |  ||||| || |||| ||||||||||||  || |||||| | |     
T  29833085 gacaaaagggaaggtagagaaaatagagaaacactctaatattctcaaagaaaagttatattacttgaatgattcaatgcttgatgat-ttgaatgtgcc 29833183  T
Q  115 taaacacttggtggtgagccttatttatactactttaggaaggctctacactacaaactagaaatatctaaaaacatcgattacaaagaaaagtctagag 214  Q
     ||||||| ||||||||||||||||||||||||| |||||||||||| || ||||||||||||||||||| ||         ||||||||||||||||||    
T  29833184 aaaacactaggtggtgagccttatttatactactctaggaaggctctccattacaaactagaaatatctagaa---------acaaagaaaagtctagag 29833274  T
Q  215 acatgaatactctagttcataag 237  Q
    ||||| |||||||||| ||||||    
T  29833275 acatggatactctagtacataag 29833297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 15 - 191
Target Start/End: Complemental strand, 10909283 - 10909107
Alignment:
Q  15 gacaaaaggaaaggcatagaaaatagagaaactctctaatattctcaaa-gaaagatattattatttaaatgtttcaatgcttgagtatcttgaatatac 113  Q
    |||||||||||||| | ||||||||||||||| |||||||||||||||| ||||  |  ||||| || |||| |||||||||||| | | |||||| | |    
T  10909283 gacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaacgaaaagttatattacttgaatgattcaatgcttgattct-ttgaatgtgc 10909185  T
Q  114 gtaaacacttggtggtgagccttatttatactactttaggaaggctctacactacaaactagaaatatctaaaaacat 191  Q
     ||||||||| |||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| ||||||    
T  10909184 ctaaacacttagtggtgagccttatttatactactctaggaaggctctacattacaaactagaaatatctagaaacat 10909107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 15 - 240
Target Start/End: Original strand, 8933558 - 8933774
Alignment:
Q  15 gacaaaaggaaaggcatagaaaatagagaaactctctaatattctcaaagaaagatattattatttaaatgtttcaatgcttgagtatcttgaatatacg 114  Q
    |||||||| ||||| | ||||||||||||||| |||||||||| |||||||||  |  ||||| || |||| |||||||||||| |  |||| |          
T  8933558 gacaaaagaaaaggtagagaaaatagagaaacactctaatattttcaaagaaaagttatattacttgaatgattcaatgcttgatt--cttgca------ 8933649  T
Q  115 taaacacttggtggtgagccttatttatactactttaggaaggctctacactacaaactagaaatatctaaaaacatcgattacaaagaaaagtctagag 214  Q
     |||||||| |||||||||||||||||||||||| |||||||| |||||| |||||||||||| |||||| |||||| ||||||||||||| | |||||     
T  8933650 -aaacacttagtggtgagccttatttatactactctaggaaggttctacattacaaactagaattatctagaaacattgattacaaagaaaggcctagaa 8933748  T
Q  215 acatgaatactctagttcataagact 240  Q
    ||||| ||||||||||||||| ||||    
T  8933749 acatggatactctagttcatatgact 8933774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 15 - 191
Target Start/End: Complemental strand, 10911526 - 10911351
Alignment:
Q  15 gacaaaaggaaaggcatagaaaatagagaaactctctaatattctcaaagaaagatattattatttaaatgtttcaatgcttgagtatcttgaatatacg 114  Q
    |||||||||||||| | | ||||||||||||| ||||||||||||||||||||  |  ||||| || |||| |||||||||||| | | |||||| | |     
T  10911526 gacaaaaggaaaggtagataaaatagagaaacactctaatattctcaaagaaaagttatattacttgaatgattcaatgcttgattct-ttgaatgtgcc 10911428  T
Q  115 taaacacttggtggtgagccttatttatactactttaggaaggctctacactacaaactagaaatatctaaaaacat 191  Q
    ||||||||| |||||||||||||||||||||||| |||||||| |||||| ||||||||||||||||||| ||||||    
T  10911427 taaacacttagtggtgagccttatttatactactctaggaagggtctacattacaaactagaaatatctagaaacat 10911351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 16 - 191
Target Start/End: Complemental strand, 13011871 - 13011697
Alignment:
Q  16 acaaaaggaaaggcatagaaaatagagaaactctctaatattctcaaagaaagatattattatttaaatgtttcaatgcttgagtatcttgaatatacgt 115  Q
    ||||||||||||| | ||||||||||||||| ||||||||||||||||||||  |  |||||||| |||| |||||||||||| | | |||||| |   |    
T  13011871 acaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaagaaaagttatattatttgaatgattcaatgcttgattct-ttgaatgtgtct 13011773  T
Q  116 aaacacttggtggtgagccttatttatactactttaggaaggctctacactacaaactagaaatatctaaaaacat 191  Q
    |||||||| |||||||||||||||||||||||| ||||||||||||||| || |||||| ||||||||| ||||||    
T  13011772 aaacacttagtggtgagccttatttatactactctaggaaggctctacattaaaaactaaaaatatctagaaacat 13011697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 15 - 236
Target Start/End: Original strand, 734588 - 734799
Alignment:
Q  15 gacaaaaggaaaggcatagaaaatagagaaactctctaatattctcaaagaaagatattattatttaaatgtttcaatgcttgagtatcttgaatat-ac 113  Q
    |||||||||||||| | ||||||||||||||| ||  ||||||||||| ||||  |  ||||| || |||  |||||||||||| |||||||| ||| ||    
T  734588 gacaaaaggaaaggtagagaaaatagagaaacact--aatattctcaaggaaaagttatattacttgaatcattcaatgcttgattatcttgagtatgac 734685  T
Q  114 gtaaacacttggtggtgagccttatttatactactttaggaaggctctacactacaaactagaaatatctaaaaacatcgattacaaagaaaagtctaga 213  Q
      ||||||| ||||||||||||||||||||||| | |||||||||||| || ||||||||||||||||||| ||         |||||||||||||||||    
T  734686 caaaacactaggtggtgagccttatttatactattctaggaaggctctccattacaaactagaaatatctagaa---------acaaagaaaagtctaga 734776  T
Q  214 gacatgaatactctagttcataa 236  Q
    || ||| |||||||||| |||||    
T  734777 gatatggatactctagtacataa 734799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 15 - 237
Target Start/End: Original strand, 2403844 - 2404049
Alignment:
Q  15 gacaaaaggaaaggcatagaaaatagagaaactctctaatattctcaaagaaagatat--tattatttaaatgtttcaatgcttgagtatcttgaatata 112  Q
    |||||||||||||| | |||||||||||||||||||||||||||||||||||| ||||  |||||||| |||||||| ||||||||      ||   ||     
T  2403844 gacaaaaggaaaggtagagaaaatagagaaactctctaatattctcaaagaaa-atattatattatttgaatgtttctatgcttga------tg---atg 2403933  T
Q  113 cgtaaacacttggtggtgagccttatttatactactttaggaaggctctacactacaaactagaaatatctaaaaacatcgattacaaagaaaagtctag 212  Q
    |  |||||||  ||||||| |||||||||||||||| ||||||| |||| || ||||||||||||||||||| ||         ||||||||||||||||    
T  2403934 ccaaaacactaagtggtgaaccttatttatactactctaggaagactctccattacaaactagaaatatctagaa---------acaaagaaaagtctag 2404024  T
Q  213 agacatgaatactctagttcataag 237  Q
    ||| ||| |||||||||| ||||||    
T  2404025 agatatggatactctagtacataag 2404049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 15 - 190
Target Start/End: Original strand, 2409966 - 2410133
Alignment:
Q  15 gacaaaaggaaaggcatagaaaatagagaaactctctaatattctcaaagaaagatat--tattatttaaatgtttcaatgcttgagtatcttgaatata 112  Q
    |||||||||||||| | |||||||||||||||||| ||||||||||||||||| ||||  |||||||| |||||||| ||||||||      ||   ||     
T  2409966 gacaaaaggaaaggtagagaaaatagagaaactctataatattctcaaagaaa-atattatattatttgaatgtttctatgcttga------tg---atg 2410055  T
Q  113 cgtaaacacttggtggtgagccttatttatactactttaggaaggctctacactacaaactagaaatatctaaaaaca 190  Q
    |  ||||||| ||||||||||||||||||||||||| |||||||||||| || |||||| ||| |||||||| |||||    
T  2410056 ccaaaacactaggtggtgagccttatttatactactctaggaaggctctccattacaaattagcaatatctagaaaca 2410133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 15 - 190
Target Start/End: Complemental strand, 29834037 - 29833872
Alignment:
Q  15 gacaaaaggaaaggcatagaaaatagagaaactctctaatattctcaaagaaagatattattatttaaatgtttcaatgcttgagtatcttgaatatacg 114  Q
    |||||||||||||| | ||||||||||||||| ||||||||||||||||||||  |  ||||| || || | ||||||||||||  |||               
T  29834037 gacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaagaaaagttatattacttgaaggattcaatgcttgatcatcca--------- 29833947  T
Q  115 taaacacttggtggtgagccttatttatactactttaggaaggctctacactacaaactagaaatatctaaaaaca 190  Q
     ||||||| ||| ||||||||||||||||||||| |||||||||||| || ||| ||||||||||||||| |||||    
T  29833946 -aaacactaggtagtgagccttatttatactactctaggaaggctctccattaccaactagaaatatctagaaaca 29833872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 86; Significance: 3e-41; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 15 - 191
Target Start/End: Complemental strand, 4531011 - 4530834
Alignment:
Q  15 gacaaaaggaaaggcatagaaaatagagaaactctctaatattctcaaagaaagatattattatttaaatgtttcaatgcttgagtat-cttgaatatac 113  Q
    |||||||||||||| | ||||||||||||||| ||||||||||||||||||||  |  ||||| || |||| ||||||||||||  || ||| | ||| |    
T  4531011 gacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaagaaaagttatattacttgaatgattcaatgcttgatgatgcttcagtatgc 4530912  T
Q  114 gtaaacacttggtggtgagccttatttatactactttaggaaggctctacactacaaactagaaatatctaaaaacat 191  Q
      ||||||| ||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| ||||||    
T  4530911 caaaacactaggtggtgagccttatttatactactctaggaaggctctacattacaaactagaaatatctagaaacat 4530834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 15 - 186
Target Start/End: Complemental strand, 4533308 - 4533136
Alignment:
Q  15 gacaaaaggaaaggcatagaaaatagagaaactctctaatattctcaaagaaagatattattatttaaatgtttcaatgcttgagtat-cttgaatatac 113  Q
    |||||||||||||| | ||||||||||||||| ||||||||||||||||||||  |  ||||| || |||| ||||||||||||  || ||| | ||| |    
T  4533308 gacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaagaaaagttatattacttgaatgattcaatgcttgatgatgcttcagtatgc 4533209  T
Q  114 gtaaacacttggtggtgagccttatttatactactttaggaaggctctacactacaaactagaaatatctaaa 186  Q
      ||||||| ||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||    
T  4533208 caaaacactaggtggtgagccttatttatactactctaggaaggctctacattacaaactagaaatatctaaa 4533136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 115 - 189
Target Start/End: Original strand, 18966220 - 18966294
Alignment:
Q  115 taaacacttggtggtgagccttatttatactactttaggaaggctctacactacaaactagaaatatctaaaaac 189  Q
    |||||||||||||||||||||||||||||||||| ||||||| | || ||  ||| |||||||||||||| ||||    
T  18966220 taaacacttggtggtgagccttatttatactactctaggaagacactccatgacacactagaaatatctagaaac 18966294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 120 - 240
Target Start/End: Complemental strand, 1701258 - 1701138
Alignment:
Q  120 acttggtggtgagccttatttatactactttaggaaggctctacactacaaactagaaatatctaaaaacatcgattacaaagaaaagtctagagacatg 219  Q
    ||||||| |||| |||||||||||| ||| |   |||||||| ||  ||||| |||||| ||||| || ||| ||||| ||||||||| ||||| | |||    
T  1701258 acttggtagtgatccttatttataccactcttataaggctctgcaaaacaaaatagaaagatctacaagcattgattaaaaagaaaagcctagaaatatg 1701159  T
Q  220 aatactctagttcataagact 240  Q
     ||| |||| |||||| ||||    
T  1701158 gataatctaattcatatgact 1701138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 85; Significance: 1e-40; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 15 - 190
Target Start/End: Original strand, 8414499 - 8414675
Alignment:
Q  15 gacaaaaggaaaggcatagaaaatagagaaactctctaatattctcaaagaaagatattattatttaaatgtttcaatgcttgagtat-cttgaatatac 113  Q
    |||||||||||||| | |||||||||| |||| ||||||||||||||||||||  |  |||||||| |||| |||||||||||| ||| ||||| ||| |    
T  8414499 gacaaaaggaaaggtagagaaaatagaaaaacactctaatattctcaaagaaaagttatattatttgaatgattcaatgcttgaatatgcttgagtatgc 8414598  T
Q  114 gtaaacacttggtggtgagccttatttatactactttaggaaggctctacactacaaactagaaatatctaaaaaca 190  Q
      ||||||| ||||||||||||||||||||||||| |||||||||||| || ||||||||||||| ||||| |||||    
T  8414599 caaaacactaggtggtgagccttatttatactactctaggaaggctctccattacaaactagaaaaatctagaaaca 8414675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 15 - 237
Target Start/End: Original strand, 8733504 - 8733719
Alignment:
Q  15 gacaaaaggaaaggcatagaaaatagagaaactctctaatattctcaaagaaa-gatattattatttaaatgtttcaatgcttgagtat-cttgaatata 112  Q
    ||||||||  |||| | |||||||||||||||||||||||||||||||||||| |||  |||||||| |||| ||||||||||||  || ||||| |||     
T  8733504 gacaaaagagaaggtagagaaaatagagaaactctctaatattctcaaagaaaagattatattatttgaatgcttcaatgcttgatgattcttgagtatg 8733603  T
Q  113 cgtaaacacttggtggtgagccttatttatactactttaggaaggctctacactacaaactagaaatatctaaaaacatcgattacaaagaaaagtctag 212  Q
    |  ||||||| ||||||||||||||||||||||||| |||||||||||| |  ||||||||||||||||||| ||         ||||||||||||||||    
T  8733604 ccaaaacactaggtggtgagccttatttatactactctaggaaggctctcctttacaaactagaaatatctagaa---------acaaagaaaagtctag 8733694  T
Q  213 agacatgaatactctagttcataag 237  Q
    ||| ||| |||||||||| ||||||    
T  8733695 agatatggatactctagtacataag 8733719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 17 - 237
Target Start/End: Original strand, 19093855 - 19094082
Alignment:
Q  17 caaaaggaaaggcatagaaaatagagaaactctctaatattctcaaagaaag---atatt---attatttaaatgtttcaatgcttgagtatcttgaata 110  Q
    |||||||| ||| | ||||||||||  |||||||||||||||||||||||||   |||||   ||||||| ||||||| |||  |||| || ||||| ||    
T  19093855 caaaaggagaggtagagaaaataga--aactctctaatattctcaaagaaagtttatatttatattatttgaatgtttgaatttttgaata-cttgagta 19093951  T
Q  111 tacgtaaacacttggtggtgagccttatttatactactttaggaag----gctctacactacaaactagaaatatctaaaaacatcgattacaaagaaaa 206  Q
    | | | |||||||||||| || |||||||||||||||| ||| |||     ||||||| ||||||||||||||||||||||| |||||||||||||||||    
T  19093952 tgcctgaacacttggtggcgaaccttatttatactactctagaaagacgtactctacattacaaactagaaatatctaaaaatatcgattacaaagaaaa 19094051  T
Q  207 gtctagagacatgaatactctagttcataag 237  Q
    ||||||||||||| ||||||||||| |||||    
T  19094052 gtctagagacatggatactctagtttataag 19094082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 15 - 190
Target Start/End: Complemental strand, 3052378 - 3052204
Alignment:
Q  15 gacaaaaggaaaggcatagaaaatagagaaactctctaatattctcaaagaaagatattattatttaaatgtttcaatgcttgagtat-cttgaatatac 113  Q
    ||||||||||| || | |||||||| ||||||||| |  ||||||||||||||| |  |||||||| |||| |||||||||||||||| ||||| ||||     
T  3052378 gacaaaaggaatggtagagaaaataaagaaactctat--tattctcaaagaaagtttatattatttgaatgcttcaatgcttgagtatacttgagtatat 3052281  T
Q  114 gtaaacacttggtggtgagccttatttatactactttaggaaggctctacactacaaactagaaatatctaaaaaca 190  Q
      ||||||| ||||||||||||||||||||||||| |||||||||||| || ||||||||||||||||||| |||||    
T  3052280 caaaacactaggtggtgagccttatttatactactctaggaaggctctccattacaaactagaaatatctagaaaca 3052204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 15 - 191
Target Start/End: Original strand, 8731185 - 8731360
Alignment:
Q  15 gacaaaaggaaaggcatagaaaatagagaaactctctaatattctcaaagaaagatattattatttaaatgtttcaatgcttgagtatcttgaatatacg 114  Q
    |||||||||||||| | | ||||||||||||| ||||||||||||||||||||  |  ||||| || |||| |||||||||||| | | || ||| | |     
T  8731185 gacaaaaggaaaggtagataaaatagagaaacactctaatattctcaaagaaaagttatattacttgaatgattcaatgcttgattct-ttaaatgtgcc 8731283  T
Q  115 taaacacttggtggtgagccttatttatactactttaggaaggctctacactacaaactagaaatatctaaaaacat 191  Q
    ||||||||| |||||||||||||||||||||||| ||||||||||||||| |||||| |||||||||||| ||||||    
T  8731284 taaacacttagtggtgagccttatttatactactctaggaaggctctacattacaaattagaaatatctagaaacat 8731360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 15 - 237
Target Start/End: Complemental strand, 3932890 - 3932677
Alignment:
Q  15 gacaaaaggaaaggcatagaaaatagagaaactctctaatattctcaaagaaagatattattatttaaatgtttcaatgcttgagtat-cttgaatatac 113  Q
    |||||||||||||| | ||||||||||||||| ||||||||||||||||||||  |  ||||| || |||| |||||||||||| ||| ||||| ||| |    
T  3932890 gacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaagaaaagttatattacttgaatgattcaatgcttgattatgcttgagtatcc 3932791  T
Q  114 gtaaacacttggtggtgagccttatttatactactttaggaaggctctacactacaaactagaaatatctaaaaacatcgattacaaagaaaagtctaga 213  Q
      ||||||| | ||||||||||||||||||||| | |||||||||||| || ||||||||||||||||||| ||         |||||||||||||||||    
T  3932790 a-aaacactagatggtgagccttatttatactattctaggaaggctctccattacaaactagaaatatctagaa---------acaaagaaaagtctaga 3932701  T
Q  214 gacatgaatactctagttcataag 237  Q
    || ||| |||||||||| ||||||    
T  3932700 gatatggatactctagtacataag 3932677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 15 - 237
Target Start/End: Complemental strand, 3935129 - 3934916
Alignment:
Q  15 gacaaaaggaaaggcatagaaaatagagaaactctctaatattctcaaagaaagatattattatttaaatgtttcaatgcttgagtat-cttgaatatac 113  Q
    |||||||||||||| | ||||||||||||||| ||||||||||||||||||||  |  ||||| || |||| |||||||||||| ||| ||||| ||| |    
T  3935129 gacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaagaaaagttatattacttgaatgattcaatgcttgattatgcttgagtatcc 3935030  T
Q  114 gtaaacacttggtggtgagccttatttatactactttaggaaggctctacactacaaactagaaatatctaaaaacatcgattacaaagaaaagtctaga 213  Q
      ||||||| | ||||||||||||||||||||| | |||||||||||| || ||||||||||||||||||| ||         |||||||||||||||||    
T  3935029 a-aaacactagatggtgagccttatttatactattctaggaaggctctccattacaaactagaaatatctagaa---------acaaagaaaagtctaga 3934940  T
Q  214 gacatgaatactctagttcataag 237  Q
    || ||| |||||||||| ||||||    
T  3934939 gatatggatactctagtacataag 3934916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 15 - 240
Target Start/End: Original strand, 42678580 - 42678795
Alignment:
Q  15 gacaaaaggaaaggcatagaaaatagagaaactctctaatattctcaaagaaagatattattatttaaatgtttcaatgcttgagtatcttgaatatacg 114  Q
    |||||||||||||| | |||||||| |||||| ||||||||||||||||||||  |  ||||| || |||| ||||||||||||    ||| ||          
T  42678580 gacaaaaggaaaggtagagaaaataaagaaacactctaatattctcaaagaaaagttatattacttgaatgattcaatgcttgatc--cttcaa------ 42678671  T
Q  115 taaacacttggtggtgagccttatttatactactttaggaaggctctacactacaaactagaaatatctaaaaacatcgattacaaagaaaagtctagag 214  Q
      ||||||||||||||||||||||||||||||| || |||||| |||||| |||||||||||| |||||| |||||| ||||||||||||| | |||||     
T  42678672 --aacacttggtggtgagccttatttatactaccttgggaaggttctacattacaaactagaattatctagaaacattgattacaaagaaaggcctagaa 42678769  T
Q  215 acatgaatactctagttcataagact 240  Q
    ||||| ||||||||| ||||| ||||    
T  42678770 acatggatactctaggtcatatgact 42678795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 15 - 190
Target Start/End: Original strand, 36464222 - 36464407
Alignment:
Q  15 gacaaaaggaaaggcatagaaaatagagaaactctctaatattctcaaagaaagatattattatttaaatgtttcaatgc----------ttgagtatct 104  Q
    |||||||||||||| | ||||||| ||||||| ||||||||||||||||||||  |  ||||| || |||| ||||||||          ||||||||||    
T  36464222 gacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaagaaaagttatattacttgaatgattcaatgcttgactatgcttgagtatct 36464321  T
Q  105 tgaatatacgtaaacacttggtggtgagccttatttatactactttaggaaggctctacactacaaactagaaatatctaaaaaca 190  Q
    ||| ||| |  ||||||| ||||||||||||||||||||||||| |||||||||||| || || |||||||||||||||| |||||    
T  36464322 tgagtatgccaaaacactaggtggtgagccttatttatactactctaggaaggctctccattataaactagaaatatctagaaaca 36464407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 15 - 164
Target Start/End: Complemental strand, 18395488 - 18395340
Alignment:
Q  15 gacaaaaggaaaggcatagaaaatagagaaactctctaatattctcaaagaaagatattattatttaaatgtttcaatgcttgagtatcttgaatatacg 114  Q
    |||||||||||||| | ||||||||||||||| ||||||||||||||||||||  |  ||||| || |||| |||||||||||| | | || ||| |       
T  18395488 gacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaagaaaagttatattacttgaatgattcaatgcttgactct-tttaatgtgtc 18395390  T
Q  115 taaacacttggtggtgagccttatttatactactttaggaaggctctaca 164  Q
    ||||||||| |||||||||||||||||||||||| |||||||||||||||    
T  18395389 taaacacttagtggtgagccttatttatactactctaggaaggctctaca 18395340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 19 - 159
Target Start/End: Original strand, 21769082 - 21769220
Alignment:
Q  19 aaaggaaaggcatagaaaatagagaaactctctaatattctcaaagaaagatattattatttaaatgtttcaatgcttgagtatcttgaatatacgtaaa 118  Q
    |||||||||| | |||||||||||||||||| |||||||||||||||||| | ||||||||| ||||||||||||||||| |  ||||||||| |  |||    
T  21769082 aaaggaaaggtagagaaaatagagaaactctttaatattctcaaagaaagttgttattatttgaatgtttcaatgcttgaat-gcttgaatatgc-caaa 21769179  T
Q  119 cacttggtggtgagccttatttatactactttaggaaggct 159  Q
    |||  |||| |||||||||||||||||||| ||| ||||||    
T  21769180 cacagggtgatgagccttatttatactactctagtaaggct 21769220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 115 - 191
Target Start/End: Original strand, 28610349 - 28610425
Alignment:
Q  115 taaacacttggtggtgagccttatttatactactttaggaaggctctacactacaaactagaaatatctaaaaacat 191  Q
    |||||||||||||||||||||||||||||||||| ||| ||||||||||| ||||||||||||||||||| ||||||    
T  28610349 taaacacttggtggtgagccttatttatactactctagaaaggctctacattacaaactagaaatatctagaaacat 28610425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 102 - 237
Target Start/End: Complemental strand, 19786851 - 19786725
Alignment:
Q  102 tcttgaatatacgtaaacacttggtggtgagccttatttatactactttaggaaggctctacactacaaactagaaatatctaaaaacatcgattacaaa 201  Q
    |||||||||| |  ||||||| ||||||||||||||||||||||||| |||||||||||| || ||||||||||||||||||| ||         |||||    
T  19786851 tcttgaatatgccaaaacactaggtggtgagccttatttatactactctaggaaggctctccattacaaactagaaatatctagaa---------acaaa 19786761  T
Q  202 gaaaagtctagagacatgaatactctagttcataag 237  Q
    |||||||||||||| ||| |||||||||| ||||||    
T  19786760 gaaaagtctagagatatggatactctagtacataag 19786725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 102 - 237
Target Start/End: Complemental strand, 19789157 - 19789031
Alignment:
Q  102 tcttgaatatacgtaaacacttggtggtgagccttatttatactactttaggaaggctctacactacaaactagaaatatctaaaaacatcgattacaaa 201  Q
    |||||||||| |  ||||||| ||||||||||||||||||||||||| ||| |||||||| || ||||||||||||||||||| ||         |||||    
T  19789157 tcttgaatatgccaaaacactaggtggtgagccttatttatactactctagtaaggctctccattacaaactagaaatatctagaa---------acaaa 19789067  T
Q  202 gaaaagtctagagacatgaatactctagttcataag 237  Q
    |||||||||||||| ||| |||||||||| ||||||    
T  19789066 gaaaagtctagagatatggatactctagtacataag 19789031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 15 - 98
Target Start/End: Original strand, 16496962 - 16497045
Alignment:
Q  15 gacaaaaggaaaggcatagaaaatagagaaactctctaatattctcaaagaaagatattattatttaaatgtttcaatgcttga 98  Q
    ||||||||| |||| | ||||||||||||||| ||||||||||||||||||||  |  ||||| ||||||| ||||||||||||    
T  16496962 gacaaaagggaaggtagagaaaatagagaaacactctaatattctcaaagaaaagttatattacttaaatgattcaatgcttga 16497045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 15 - 98
Target Start/End: Original strand, 16535144 - 16535227
Alignment:
Q  15 gacaaaaggaaaggcatagaaaatagagaaactctctaatattctcaaagaaagatattattatttaaatgtttcaatgcttga 98  Q
    ||||||||| |||| | ||||||||||||||| ||||||||||||||||||||  |  ||||| ||||||| ||||||||||||    
T  16535144 gacaaaagggaaggtagagaaaatagagaaacactctaatattctcaaagaaaagttatattacttaaatgattcaatgcttga 16535227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 15 - 98
Target Start/End: Complemental strand, 16630518 - 16630435
Alignment:
Q  15 gacaaaaggaaaggcatagaaaatagagaaactctctaatattctcaaagaaagatattattatttaaatgtttcaatgcttga 98  Q
    ||||||||| |||| | ||||||||||||||| ||||||||||||||||||||  |  ||||| ||||||| ||||||||||||    
T  16630518 gacaaaagggaaggtagagaaaatagagaaacactctaatattctcaaagaaaagttatattacttaaatgattcaatgcttga 16630435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 15 - 64
Target Start/End: Complemental strand, 19786957 - 19786908
Alignment:
Q  15 gacaaaaggaaaggcatagaaaatagagaaactctctaatattctcaaag 64  Q
    |||||||||||||| | ||||||||||||||| |||||||||||||||||    
T  19786957 gacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaag 19786908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 15 - 64
Target Start/End: Complemental strand, 19789263 - 19789214
Alignment:
Q  15 gacaaaaggaaaggcatagaaaatagagaaactctctaatattctcaaag 64  Q
    |||||||||||||| | ||||||||||||||| |||||||||||||||||    
T  19789263 gacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaag 19789214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 60
Target Start/End: Complemental strand, 42680852 - 42680808
Alignment:
Q  16 acaaaaggaaaggcatagaaaatagagaaactctctaatattctc 60  Q
    |||||| |||||| | ||||||||||||||| |||||||||||||    
T  42680852 acaaaatgaaaggtagagaaaatagagaaacactctaatattctc 42680808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 84; Significance: 5e-40; HSPs: 2)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 15 - 190
Target Start/End: Complemental strand, 31820 - 31654
Alignment:
Q  15 gacaaaaggaaaggcatagaaaatagagaaactctctaatattctcaaagaaagatattattatttaaatgtttcaatgcttgagtatcttgaatatacg 114  Q
    |||||||||||||| | ||||||||||||||||||||||| ||||||||||||  | ||||||||| |||| | ||||||||||||||          |     
T  31820 gacaaaaggaaaggtagagaaaatagagaaactctctaatgttctcaaagaaatttgttattatttgaatgctacaatgcttgagtatg---------cc 31730  T
Q  115 taaacacttggtggtgagccttatttatactactttaggaaggctctacactacaaactagaaatatctaaaaaca 190  Q
    || ||||||||||||||||||||||||||||||| |||||||||||| || |||||||||||||||||||||||||    
T  31729 tacacacttggtggtgagccttatttatactactctaggaaggctctccattacaaactagaaatatctaaaaaca 31654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 15 - 190
Target Start/End: Complemental strand, 29505 - 29339
Alignment:
Q  15 gacaaaaggaaaggcatagaaaatagagaaactctctaatattctcaaagaaagatattattatttaaatgtttcaatgcttgagtatcttgaatatacg 114  Q
    |||||||||||||| | ||||||||||||||||||||||| ||||||||||||| | |||||||||||||| |||||||||||||         ||| |     
T  29505 gacaaaaggaaaggtagagaaaatagagaaactctctaatgttctcaaagaaagttgttattatttaaatgcttcaatgcttgag---------tatgcc 29415  T
Q  115 taaacacttggtggtgagccttatttatactactttaggaaggctctacactacaaactagaaatatctaaaaaca 190  Q
    ||  |||||||||||||||||||||||||||||| ||||||| |||| || ||||||||| ||||||||| |||||    
T  29414 tacgcacttggtggtgagccttatttatactactctaggaagactctccattacaaactaaaaatatctagaaaca 29339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0599 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: scaffold0599
Description:

Target: scaffold0599; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 15 - 236
Target Start/End: Complemental strand, 1792 - 1579
Alignment:
Q  15 gacaaaaggaaaggcatagaaaatagagaaactctctaatattctcaaagaaagatattattatttaaatgtttcaatgcttgagtat-cttgaatatac 113  Q
    |||||||||||||| | ||||||||||||||| ||||||||| ||||||||||  |  ||||| || |||| ||||||||||||  || ||||| ||| |    
T  1792 gacaaaaggaaaggtagagaaaatagagaaacactctaatatcctcaaagaaaagttatattacttgaatgattcaatgcttgatgatgcttgagtatgc 1693  T
Q  114 gtaaacacttggtggtgagccttatttatactactttaggaaggctctacactacaaactagaaatatctaaaaacatcgattacaaagaaaagtctaga 213  Q
      ||||||| ||||||||||||||||||||||||| |||||||||||| || ||||||||||||||||||| ||         |||||||||||||||||    
T  1692 caaaacactaggtggtgagccttatttatactactctaggaaggctctccattacaaactagaaatatctagaa---------acaaagaaaagtctaga 1602  T
Q  214 gacatgaatactctagttcataa 236  Q
    || ||| |||||||||| |||||    
T  1601 gatatggatactctagtacataa 1579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 80; Significance: 1e-37; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 15 - 190
Target Start/End: Complemental strand, 4877167 - 4876992
Alignment:
Q  15 gacaaaaggaaaggcatagaaaatagagaaactctctaatattctcaaagaaagatattattatttaaatgtttcaatgcttgagtatcttgaatatacg 114  Q
    |||||||||||||| | ||||||||||||||| ||||||||||||||| ||||  |  ||||| || |||  |||||||||||| |||||||| |||       
T  4877167 gacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaggaaaagttatattacttgaatcattcaatgcttgattatcttgagtatgtc 4877068  T
Q  115 taaacacttggtggtgagccttatttatactactttaggaaggctctacactacaaactagaaatatctaaaaaca 190  Q
     ||||||| | ||||||||||||||||||||||| |||||||||||| || ||||||||||||||||||| |||||    
T  4877067 aaaacactagatggtgagccttatttatactactctaggaaggctctccattacaaactagaaatatctagaaaca 4876992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 15 - 190
Target Start/End: Complemental strand, 4879495 - 4879320
Alignment:
Q  15 gacaaaaggaaaggcatagaaaatagagaaactctctaatattctcaaagaaagatattattatttaaatgtttcaatgcttgagtatcttgaatatacg 114  Q
    |||||||||||||| | ||||||||||||||| ||||||||||||||| ||||  |  ||||| || |||  |||||||||||| |||||||| |||       
T  4879495 gacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaggaaaagttatattacttgaatcattcaatgcttgattatcttgagtatgtc 4879396  T
Q  115 taaacacttggtggtgagccttatttatactactttaggaaggctctacactacaaactagaaatatctaaaaaca 190  Q
     ||||||| | ||||||||||||||||||||||| |||||||||||| || ||||||||||||||||||| |||||    
T  4879395 aaaacactagatggtgagccttatttatactactctaggaaggctctccattacaaactagaaatatctagaaaca 4879320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 15 - 190
Target Start/End: Original strand, 24519162 - 24519338
Alignment:
Q  15 gacaaaaggaaaggcatagaaaatagagaaactctctaatattctcaaagaaagatattattatttaaatgtttcaatgcttgagtat-cttgaatatac 113  Q
    |||||||||||||| | ||||||||||||||| ||||||||||||| ||||||  |  ||||| || |||| |||||||||||| ||| ||| | ||| |    
T  24519162 gacaaaaggaaaggtagagaaaatagagaaacactctaatattctctaagaaaagttatattacttgaatgattcaatgcttgattatgcttcagtatgc 24519261  T
Q  114 gtaaacacttggtggtgagccttatttatactactttaggaaggctctacactacaaactagaaatatctaaaaaca 190  Q
      ||||||| | ||||||||||||||||||||||| |||||||||||| || || |||||||||||||||| |||||    
T  24519262 caaaacactagatggtgagccttatttatactactctaggaaggctctccattataaactagaaatatctagaaaca 24519338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 15 - 183
Target Start/End: Original strand, 36379474 - 36379644
Alignment:
Q  15 gacaaaaggaaaggcatagaaaatagagaaactctctaatattctcaaag--aaagatattattatttaaatgtttcaatgcttgagtatcttgaatata 112  Q
    |||||||||||||| | ||||||||||||||| |||||||||||||||||  |||| ||| |||| || |||  |||||||||||| |||||||| |||     
T  36379474 gacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaaggaaaagttat-attacttgaatcattcaatgcttgattatcttgagtatg 36379572  T
Q  113 cgtaaacactt-ggtggtgagccttatttatactactttaggaaggctctacactacaaactagaaatatct 183  Q
    |  ||||||   ||||||||||||||||||||||||| |||||||||||| || ||||||||||||||||||    
T  36379573 ccaaaacacccaggtggtgagccttatttatactactctaggaaggctctccattacaaactagaaatatct 36379644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 19 - 190
Target Start/End: Original strand, 36377193 - 36377366
Alignment:
Q  19 aaaggaaaggcatagaaaatagagaaactctctaatattctcaaag--aaagatattattatttaaatgtttcaatgcttgagtatcttgaatatacgta 116  Q
    |||||||||| | ||||||||||||||| |||||||||||||||||  |||| ||| |||| || |||  |||||||||||| ||| |||| ||| |  |    
T  36377193 aaaggaaaggtagagaaaatagagaaacactctaatattctcaaaggaaaagttat-attacttgaatcattcaatgcttgattattttgagtatgccaa 36377291  T
Q  117 aacactt-ggtggtgagccttatttatactactttaggaaggctctacactacaaactagaaatatctaaaaaca 190  Q
    ||||||| ||||||||||||||||||||||||| |||||||||||| || |||||| ||||||||||| ||||||    
T  36377292 aacacttaggtggtgagccttatttatactactctaggaaggctctccattacaaagtagaaatatctgaaaaca 36377366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 15 - 190
Target Start/End: Original strand, 21268129 - 21268314
Alignment:
Q  15 gacaaaaggaaaggcatagaaaatagagaaactctctaatattctcaaag--aaagatattattatttaaatgtttcaatgcttgagtatcttgaatata 112  Q
    |||||||| ||||| | ||||||||||||||| |||||||||||||||||  |||| ||| |||| || |||  |||||||||||| |||||||| |||     
T  21268129 gacaaaagaaaaggtagagaaaatagagaaacactctaatattctcaaaggaaaagttat-attacttgaatcattcaatgcttgattatcttgagtatt 21268227  T
Q  113 cg---------taaacacttggtggtgagccttatttatactactttaggaaggctctacactacaaactagaaatatctaaaaaca 190  Q
     |         |||||||| ||| ||||||||||||||||||||| |||||||||||| || ||||||||||||||||||| |||||    
T  21268228 tggattatgcctaaacactaggtagtgagccttatttatactactctaggaaggctctccattacaaactagaaatatctagaaaca 21268314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 54; Significance: 4e-22; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 122 - 240
Target Start/End: Complemental strand, 21199376 - 21199256
Alignment:
Q  122 ttggtggtgagccttatttatactactttaggaaggctctacactacaaactagaaatatctaaaaacatcgattacaaagaaaagtctagagac--atg 219  Q
    |||||||||| ||||||||||| ||||  ||||||||| |||| ||||||||||||||||||| |||||| |||||||| |||| | ||||||||  |||    
T  21199376 ttggtggtgaaccttatttatagtactccaggaaggctgtacattacaaactagaaatatctagaaacattgattacaatgaaaggcctagagacatatg 21199277  T
Q  220 aatactctagttcataagact 240  Q
     |||||| |||||||| ||||    
T  21199276 gatactccagttcatatgact 21199256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 15 - 103
Target Start/End: Complemental strand, 20642352 - 20642264
Alignment:
Q  15 gacaaaaggaaaggcatagaaaatagagaaactctctaatattctcaaagaaagatattattatttaaatgtttcaatgcttgagtatc 103  Q
    ||||||| |||||| | |||||||||||||| ||||||||||||||||||||| ||||| |||||| |||| |||||||||||| ||||    
T  20642352 gacaaaatgaaaggtagagaaaatagagaaattctctaatattctcaaagaaatatatttttatttgaatgcttcaatgcttgactatc 20642264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1361 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: scaffold1361
Description:

Target: scaffold1361; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 15 - 145
Target Start/End: Complemental strand, 131 - 1
Alignment:
Q  15 gacaaaaggaaaggcatagaaaatagagaaactctctaatattctcaaa-gaaagatattattatttaaatgtttcaatgcttgagtatcttgaatatac 113  Q
    |||||||||||||| | ||||||||||||||| || ||||||||||||| ||||  |  ||||| || |||| |||||||||||| | | |||||| | |    
T  131 gacaaaaggaaaggtagagaaaatagagaaacactttaatattctcaaacgaaaagttatattacttgaatgattcaatgcttgattct-ttgaatgtgc 33  T
Q  114 gtaaacacttggtggtgagccttatttatact 145  Q
     ||||||||| |||||||||||||||||||||    
T  32 ctaaacacttagtggtgagccttatttatact 1  T

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Target: scaffold0098 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: scaffold0098
Description:

Target: scaffold0098; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 15 - 102
Target Start/End: Original strand, 3716 - 3804
Alignment:
Q  15 gacaaaaggaaaggcatagaaaatagagaaactctctaatattctcaaagaaagatattattatttaaatgt-ttcaatgcttgagtat 102  Q
    |||||||||||||| | ||||||||||| ||||||||||||||||||||||||| |  |||||||| ||| | ||||||| ||||||||    
T  3716 gacaaaaggaaaggtagagaaaatagagtaactctctaatattctcaaagaaagtttatattatttgaatttcttcaatggttgagtat 3804  T

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Target: scaffold0008 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 15 - 67
Target Start/End: Complemental strand, 88522 - 88470
Alignment:
Q  15 gacaaaaggaaaggcatagaaaatagagaaactctctaatattctcaaagaaa 67  Q
    |||||||||||||| | ||||||||||||||  ||||||||||||||||||||    
T  88522 gacaaaaggaaaggtagagaaaatagagaaagactctaatattctcaaagaaa 88470  T

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Target: scaffold0045 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 68
Target Start/End: Complemental strand, 64136 - 64081
Alignment:
Q  11 cagagacaaaaggaaaggcatagaaaatagagaaactctctaatattctcaaagaaag 68  Q
    ||||||||||| |||||| | ||||||||||||||  | |||||||||||||||||||    
T  64136 cagagacaaaatgaaaggtaaagaaaatagagaaa--ccctaatattctcaaagaaag 64081  T

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Target: scaffold0045; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 68
Target Start/End: Complemental strand, 71468 - 71413
Alignment:
Q  11 cagagacaaaaggaaaggcatagaaaatagagaaactctctaatattctcaaagaaag 68  Q
    ||||||||||| |||||| | ||||||||||||||  | |||||||||||||||||||    
T  71468 cagagacaaaatgaaaggtaaagaaaatagagaaa--ccctaatattctcaaagaaag 71413  T

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