View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1907_low_10 (Length: 368)
Name: NF1907_low_10
Description: NF1907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1907_low_10 |
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| [»] chr6 (1 HSPs) |
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| [»] chr3 (5 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 1 - 368
Target Start/End: Complemental strand, 31742851 - 31742489
Alignment:
| Q |
1 |
aatgtattttttctattaataattttaaaatactagttgatattccaaaaatatccttggactaaactactcatatcttacattacagttgcctacaatt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| |||||||||| |
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| T |
31742851 |
aatgtattttttctattaataattttaaaatactagttgatattccaaaaatatccttggactaaactactccttccttacc--------gcctacaatt |
31742760 |
T |
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| Q |
101 |
aatgtaattctatcattaaagat---gtatgagtaccaattcaagcctcacaaacacgcctctccctcttcacaagaatacatcggttttattctggttt |
197 |
Q |
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||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
31742759 |
aatgtaattctatcattaaagctattgtatgagtaccaattcaagcctcacaaacacgcctctccctcttcacaagaatacatcggttttattatggttt |
31742660 |
T |
|
| Q |
198 |
aatgtggctattgatattctcacaacttatttggatttcaaattgaaaaaagtaggcaaactcccaccacnnnnnnncataaaattcccaccaaaatttt |
297 |
Q |
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|||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||| || |||||| | ||||||||||| |
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| T |
31742659 |
aatgtggctattgatattctcacagctcatttggatttcaaattgaaaaaagtaggcaaactcccaccacttttttccaaaaaatttcgaccaaaatttt |
31742560 |
T |
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| Q |
298 |
gagcaaataaacttttgaaatttcaaattttgaatagagtagaaatgaagtttaaacatccggtcattctc |
368 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| |
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| T |
31742559 |
gagcaaataaacttttgaaatttcaaattttgaatagagtagaaatgaagtttaaccatccagtcattctc |
31742489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 255; Significance: 1e-142; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 1 - 368
Target Start/End: Complemental strand, 5165369 - 5165008
Alignment:
| Q |
1 |
aatgtattttttctattaataattttaaaatactagttgatattccaaaaatatccttggactaaactactcatatcttacattacagttgcctacaatt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||||||||| |
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| T |
5165369 |
aatgtattttttctattaataattttaaaatactagttgatattccaaaaatatccttggactaaactactcctaccttac--------tgcctacaatt |
5165278 |
T |
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| Q |
101 |
aatgtaattctatcattaaagat---gtatgagtaccaattcaagcctcacaaacacgcctctccctcttcacaagaatacatcggttttattctggttt |
197 |
Q |
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||||||||||||||||||||| | ||||||||| ||||||||||||||||||||| ||||||| |||||||||||||||||| ||||||||||||||| |
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| T |
5165277 |
aatgtaattctatcattaaagctattgtatgagtatcaattcaagcctcacaaacacacctctcc-tcttcacaagaatacatcagttttattctggttt |
5165179 |
T |
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| Q |
198 |
aatgtggctattgatattctcacaacttatttggatttcaaattgaaaaaagtaggcaaactcccaccacnnnnnnncataaaattcccaccaaaatttt |
297 |
Q |
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| T |
5165178 |
aatgtggctattgatattctcacagctcatttggatttcaaattgaaaaaagtaggcaaactcccaccacttttttccagaaaattcccaccaaaatttt |
5165079 |
T |
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| Q |
298 |
gagcaaataaacttttgaaatttcaaattttgaatagagtagaaatgaagtttaaacatccggtcattctc |
368 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| |
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| T |
5165078 |
gagcaaataaacttttgaaatttcaaattttaaatagagtagaaatgaagtttaaacatcccgtcattctc |
5165008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 4 - 368
Target Start/End: Original strand, 3804580 - 3804930
Alignment:
| Q |
4 |
gtattttttctattaataattttaaaatactagttgatattccaaaaatatccttggactaaactactcatatcttacattacagttgcctacaattaat |
103 |
Q |
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|||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || |||||||| ||| |||||||||||||| |
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| T |
3804580 |
gtatcttttctattaataattttaaaatactagttgatatttcaaaaatatccttggactaaactacttctaccttacattccagctgcctacaattaat |
3804679 |
T |
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| Q |
104 |
gtaattctatcattaaag---atgtatgagtaccaattcaagcctcacaaacacgcctctccctcttcacaagaatacatcggttttattctggtttaat |
200 |
Q |
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| T |
3804680 |
gtaattctatcattaaagctattgcatgagttccaatccaagcctcacaaacacgtctctccctcttcacaagaatacataggttttat----------t |
3804769 |
T |
|
| Q |
201 |
gtggctattgatattctcacaacttatttggatttcaaattgaaaaaagtaggcaaactcccaccacnnnnnnncataaaattcccaccaaaattttgag |
300 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| |
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| T |
3804770 |
gtggctattgatattctc-------atttggatttcaaattgaaaaaagtaggcaaactcccaccacttttttccagaaaattcccaccaaaattttgag |
3804862 |
T |
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| Q |
301 |
caaataaacttttgaaatttcaaattttgaatagagtagaaatgaagtttaaacatccggtcattctc |
368 |
Q |
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| T |
3804863 |
caaataaacttttgaaatttcaaattttgaatagagtagaaatgaagtttaaacatctagtcattctc |
3804930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 151; E-Value: 8e-80
Query Start/End: Original strand, 6 - 183
Target Start/End: Complemental strand, 27149962 - 27149782
Alignment:
| Q |
6 |
attttttctattaataattttaaaatactagttgatattccaaaaatatccttggactaaactactcatatcttacattacagttgcctacaattaatgt |
105 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| |||||||||||||||| |
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| T |
27149962 |
attttttctattaataattttaaaatactagttgatattccaaaaatatccttggactaaactactcctaccttacattacagctgcctacaattaatgt |
27149863 |
T |
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| Q |
106 |
aattctatcattaaag---atgtatgagtaccaattcaagcctcacaaacacgcctctccctcttcacaagaatacatcgg |
183 |
Q |
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| T |
27149862 |
aattctatcattaaagctattgtatgagtaccaattcaagcctcacaaacacgcctctccctcttcacaagaatacatcgg |
27149782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 146; E-Value: 8e-77
Query Start/End: Original strand, 1 - 181
Target Start/End: Complemental strand, 8435439 - 8435256
Alignment:
| Q |
1 |
aatgtattttttctattaataattttaaaatactagttgatattccaaaaatatccttggactaaactactcatatcttacattacagttgcctacaatt |
100 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| ||||||||||| |
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| T |
8435439 |
aatgtattttttctattaataattttaaaatactagttgatattccaaaaatatccttggactaaactactcctaccttacattacagctgcctacaatt |
8435340 |
T |
|
| Q |
101 |
aatgtaattctatcattaaag---atgtatgagtaccaattcaagcctcacaaacacgcctctccctcttcacaagaatacatc |
181 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||| || |||||||||||||||||||||||| |
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| T |
8435339 |
aatgtaattctatcattaaagctattgtatgagtaccaattcaagcctcacaaacatgcttctccctcttcacaagaatacatc |
8435256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 234 - 368
Target Start/End: Complemental strand, 8435255 - 8435121
Alignment:
| Q |
234 |
ttcaaattgaaaaaagtaggcaaactcccaccacnnnnnnncataaaattcccaccaaaattttgagcaaataaacttttgaaatttcaaattttgaata |
333 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
8435255 |
ttcaaattgaaaaaagtaggcaaactcccaccactttttttcataaaattcccaccaaaattttgagcaaataaatttttgaaatttcaaattttgaata |
8435156 |
T |
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| Q |
334 |
gagtagaaatgaagtttaaacatccggtcattctc |
368 |
Q |
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||||||||||||||||||||||||| ||||||||| |
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| T |
8435155 |
gagtagaaatgaagtttaaacatccagtcattctc |
8435121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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