View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1907_low_12 (Length: 363)
Name: NF1907_low_12
Description: NF1907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1907_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 131; Significance: 7e-68; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 4 - 176
Target Start/End: Complemental strand, 41968854 - 41968670
Alignment:
| Q |
4 |
ggaggagcagagatctaagaactgaactagtaatgaactgtaaataaagaagaggtgatgaccaaaattatttacatgattttctatcaatgtacaaaag |
103 |
Q |
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| T |
41968854 |
ggaggaggagagatctaagaattgaactagtaatgaactgtaaataaagaagaggtgatgaccaaaattatttacatgattttctatcaatgtacaaaag |
41968755 |
T |
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| Q |
104 |
ggttccattaattcttta---------taatg---ttacatgaatgattttatttcaggctcatataattggagctaccattgag |
176 |
Q |
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|||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41968754 |
ggttccattaattctttatatcctttttaatgttattacatgaatgattttatttcaggctcatataattggagctaccattgag |
41968670 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 231 - 342
Target Start/End: Complemental strand, 41968621 - 41968510
Alignment:
| Q |
231 |
acttcaactacagcttcagattcaactccagaaactcctgcaactcccacaactccaccagctccagtgactccaacgcctcctgcaacttcaccagctc |
330 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41968621 |
acttcaactacagcttcagattcaactccagaaactcctgcaactccgacaactccaccagctccagtgactccaacgcctcctgcaacttcaccagctc |
41968522 |
T |
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| Q |
331 |
cagtgactcctg |
342 |
Q |
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|||||||||||| |
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| T |
41968521 |
cagtgactcctg |
41968510 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 74; Significance: 7e-34; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 253 - 342
Target Start/End: Complemental strand, 1235637 - 1235548
Alignment:
| Q |
253 |
caactccagaaactcctgcaactcccacaactccaccagctccagtgactccaacgcctcctgcaacttcaccagctccagtgactcctg |
342 |
Q |
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| T |
1235637 |
caactccagaaactccagcaactccgacaactccaccagctccggtgactccaacgcctcctgcaactccaccagctccagtgactcctg |
1235548 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 117 - 176
Target Start/End: Complemental strand, 1235782 - 1235723
Alignment:
| Q |
117 |
ctttataatgttacatgaatgattttatttcaggctcatataattggagctaccattgag |
176 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
1235782 |
ctttttaatgttacatgaatgattttatttcaggctcatataataggagctaccattgag |
1235723 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 244 - 287
Target Start/End: Complemental strand, 1235673 - 1235630
Alignment:
| Q |
244 |
cttcagattcaactccagaaactcctgcaactcccacaactcca |
287 |
Q |
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||||||||||||||||||||||||| | |||||| ||||||||| |
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| T |
1235673 |
cttcagattcaactccagaaactccggtaactccaacaactcca |
1235630 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 4 - 72
Target Start/End: Original strand, 29521956 - 29522024
Alignment:
| Q |
4 |
ggaggagcagagatctaagaactgaactagtaatgaactgtaaataaagaagaggtgatgaccaaaatt |
72 |
Q |
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||||||| ||||||||| ||| |||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
29521956 |
ggaggaggagagatctaggaattgaaggagtaatgaactgtaaataaagaagaggtgatgaccaaaatt |
29522024 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 71
Target Start/End: Complemental strand, 35739644 - 35739589
Alignment:
| Q |
16 |
atctaagaactgaactagtaatgaactgtaaataaagaagaggtgatgaccaaaat |
71 |
Q |
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||||||||| |||| |||||||||| ||||| ||||||||||||||||||||||| |
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| T |
35739644 |
atctaagaattgaaggagtaatgaaccgtaaagaaagaagaggtgatgaccaaaat |
35739589 |
T |
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