View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1907_low_13 (Length: 362)
Name: NF1907_low_13
Description: NF1907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1907_low_13 |
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| [»] scaffold0370 (1 HSPs) |
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Alignment Details
Target: scaffold0370 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: scaffold0370
Description:
Target: scaffold0370; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 1 - 352
Target Start/End: Complemental strand, 12517 - 12167
Alignment:
| Q |
1 |
agtattatggaacaaagtgagtaagttgaatttataaaattaccgtttccttaagcacttccagagacttgaatgaagcaacatctttctgttgaatctt |
100 |
Q |
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| T |
12517 |
agtattatggaacaaagtgagtaagttgaatttataaaattaccgtttccttaagcacttccagagacttgaatgaagcaacatctttctgttgaatctt |
12418 |
T |
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| Q |
101 |
tatatctctcagaatttgtttttcttcacccaaactcttgctcccatgtatcttcaaataattcaaggactatacatacacaaataatttcaaaaccaga |
200 |
Q |
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| T |
12417 |
tatatctctcagaatttgtttttcttcacccaaactcttgctcccatgtatcttcaaataattcaaggactatacatacacaaataatttcaaaaccaga |
12318 |
T |
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| Q |
201 |
acaacaaaaaatatatgaattttatcatgataaaaataccgttaaatagatttacatttttatcaagcttttcaccaaaccatcctccactcgctacttc |
300 |
Q |
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| T |
12317 |
acaaca-aaaatatatgaattttatcatgataaaaatactgttaaatagatttacatttttatcaagcttttcaccaaaccatcctccactcgctacttc |
12219 |
T |
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| Q |
301 |
gatattccagatattcaattcatcaagagccatattaaaatcccttagtatt |
352 |
Q |
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| T |
12218 |
gatattccagatattcaattcatcaagagccatattaaaatcccttagtatt |
12167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 64; Significance: 6e-28; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 69 - 299
Target Start/End: Complemental strand, 38637456 - 38637223
Alignment:
| Q |
69 |
ttgaatgaagcaacatctttctgttgaatctttatatctctcagaatttgtttttcttcacccaaactcttgctcccatgtatcttcaaataattcaagg |
168 |
Q |
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| T |
38637456 |
ttgaatgaagcaacatctttctgcagaatctttatatccctcagaatttgtttctcttcggccaaacttttgctcctatgtagcttaaaataattcaaag |
38637357 |
T |
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| Q |
169 |
actatacatacacaaataatttcaaaaccagaacaacaaaaaatatatgaattttatcatgataaaaataccgttaaatagat---------ttacattt |
259 |
Q |
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| T |
38637356 |
ac--tacatagac----gatttcaaaatcaaaacaacacaaaatatattaatttcatcatattaaaaattctattaaatagctttatttttcttacattt |
38637263 |
T |
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| Q |
260 |
ttatcaagcttttcaccaaaccatcctccactcgctactt |
299 |
Q |
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| T |
38637262 |
ttatcaagcttttccccgaaccattctccatttgctactt |
38637223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 84 - 238
Target Start/End: Complemental strand, 38690107 - 38689957
Alignment:
| Q |
84 |
tctttctgttgaatctttatatctctcagaatttgtttttcttcacccaaactcttgctcccatgtatcttcaaataattcaaggactatacatacacaa |
183 |
Q |
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| T |
38690107 |
tctttctgttgaatttttatatccctcagaatttgtttctcctcagccaaacttttgcttccatgtagcttcaaataactcaaagac------tacacaa |
38690014 |
T |
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| Q |
184 |
ataatttcaaaaccagaacaacaaaaa--atatatgaattttatcatgataaaaata |
238 |
Q |
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| T |
38690013 |
atgattttaataccaaaacaacaaaaaatatatattaatttcatcataataaaaata |
38689957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 31 - 90
Target Start/End: Complemental strand, 38690178 - 38690119
Alignment:
| Q |
31 |
tttataaaattaccgtttccttaagcacttccagagacttgaatgaagcaacatctttct |
90 |
Q |
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| T |
38690178 |
tttattaaattaccgtttccttaagcacttctagtgatttgaatgaagcaacatctttct |
38690119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 28 - 124
Target Start/End: Complemental strand, 38633550 - 38633454
Alignment:
| Q |
28 |
gaatttataaaattaccgtttccttaagcacttccagagacttgaatgaagcaacatctttctgttgaatctttatatctctcagaatttgtttttc |
124 |
Q |
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| T |
38633550 |
gaatctattaaattaccgtttttttcagaacttttagcgatttgaatgaagcaacacctttctgttgaatgtttatatccctcagaatatttttttc |
38633454 |
T |
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