View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1907_low_14 (Length: 354)
Name: NF1907_low_14
Description: NF1907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1907_low_14 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 128; Significance: 4e-66; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 19 - 150
Target Start/End: Original strand, 41935726 - 41935857
Alignment:
| Q |
19 |
cattcagctattttcttgtctatataccttgggaaaattattgctttctttcctcaactagtctgaagctcgtgaggtaaatttttgctatatgaatttt |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41935726 |
cattcagctattttcttgtctatatacctttggaaaattattgctttctttcctcaactagtctgaagctcgtgaggtaaatttttgctatatgaatttt |
41935825 |
T |
|
| Q |
119 |
cacggtaatgaaagcataactagcctttaagc |
150 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
41935826 |
cacggtaatgaaagcataactagcctttaagc |
41935857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 175 - 275
Target Start/End: Original strand, 41935887 - 41935987
Alignment:
| Q |
175 |
atcatatagaataggatttgaatattcacatatcaagagccacgactagggtgcaaagaaaaagcatggaaaaatcaaggagaaggctaaacagtgccct |
274 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||| |
|
|
| T |
41935887 |
atcatatagaataggatttgaatattcacatatcaagagccacgactagggtgcaaagaaaaagcatggaaaaaccaaggaaaaggctaaacagtgccct |
41935986 |
T |
|
| Q |
275 |
t |
275 |
Q |
| |
|
| |
|
|
| T |
41935987 |
t |
41935987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 252 - 289
Target Start/End: Complemental strand, 34228401 - 34228364
Alignment:
| Q |
252 |
aggagaaggctaaacagtgcccttaaggtattggttaa |
289 |
Q |
| |
|
||||||| || ||||||||||||||||||||||||||| |
|
|
| T |
34228401 |
aggagaatgccaaacagtgcccttaaggtattggttaa |
34228364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University