View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1907_low_17 (Length: 312)

Name: NF1907_low_17
Description: NF1907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1907_low_17
NF1907_low_17
[»] chr7 (3 HSPs)
chr7 (159-303)||(26880547-26880691)
chr7 (18-111)||(26880453-26880546)
chr7 (46-95)||(40250196-40250245)
[»] chr2 (1 HSPs)
chr2 (46-107)||(40707441-40707502)


Alignment Details
Target: chr7 (Bit Score: 133; Significance: 4e-69; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 159 - 303
Target Start/End: Original strand, 26880547 - 26880691
Alignment:
Q  159 cattactggtatcatcaaaatacaaaactttcatcagtgaaaattaaatgcttcggaaaaaacttgccctaaaaacacaacaccgcaagcaacaagacat 258  Q
    |||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26880547 cattactgttatcatcaaaatacaaaacttttatcagtgaaaattaaatgcttcggaaaaaacttgccctaaaaacacaacaccgcaagcaacaagacat 26880646  T
Q  259 aaaaattaagatggtaagagtttatggaaatgaacatacctatgc 303  Q
     ||||||||||||||||||||||||||||||||||||||||||||    
T  26880647 gaaaattaagatggtaagagtttatggaaatgaacatacctatgc 26880691  T

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Target: chr7; HSP #2
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 18 - 111
Target Start/End: Original strand, 26880453 - 26880546
Alignment:
Q  18 aaaaaggcacaaaggaaacaccatgctgatggtgaaactacaaagtatgaaaatacaatgtaagacgaaatttcaagagtatctataatgactg 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26880453 aaaaaggcacaaaggaaacaccatgctgatggtgaaactacaaagtatgaaaatacaatgtaagacgaaatttcaagagtatctataatgactg 26880546  T

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Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 46 - 95
Target Start/End: Original strand, 40250196 - 40250245
Alignment:
Q  46 atggtgaaactacaaagtatgaaaatacaatgtaagacgaaatttcaaga 95  Q
    ||||||||||| |||| |||||||||| ||||||||||||||||||||||    
T  40250196 atggtgaaactgcaaaatatgaaaatataatgtaagacgaaatttcaaga 40250245  T

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Target: chr2 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 46 - 107
Target Start/End: Original strand, 40707441 - 40707502
Alignment:
Q  46 atggtgaaactacaaagtatgaaaatacaatgtaagacgaaatttcaagagtatctataatg 107  Q
    ||||||||||||||||||||||||||| ||||||||||  ||||| |||| |||||||||||    
T  40707441 atggtgaaactacaaagtatgaaaatataatgtaagacagaattttaagaatatctataatg 40707502  T

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