View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1907_low_18 (Length: 288)
Name: NF1907_low_18
Description: NF1907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1907_low_18 |
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Alignment Details
Target: chr7 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 11 - 265
Target Start/End: Original strand, 1033643 - 1033897
Alignment:
| Q |
11 |
ttattctcaattcacatctaacttaccttcaaatatttatgaatttcttcatcacaacgcctatgaaggttaacttttaaaccatgcttcatgtaaagtg |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
1033643 |
ttattctcaattcacatctaacttaccttcaaatatttatgaatttcttcatcacaacgcctatgaaggttaacttttaatccatgcttcatgtaaagtg |
1033742 |
T |
|
| Q |
111 |
tcaaagatagcttaggaacaatagggtgattctcaacaaccttaacatggtaacgaaatatgatgctagctgcaacatatttcatttgatagtatgcaaa |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1033743 |
tcaaagatagcttaggaacaatagggtgattctcaacaaccttaacatggtaaccaaatatgatgctagctgcaacatatttcatttgatagtatgcaaa |
1033842 |
T |
|
| Q |
211 |
atctttgcctaaacacaaccttggtcctccattaaaagcagtaaatttgtaggca |
265 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1033843 |
atctttgcctaaacacaaccttggtcctccattaaaagcagtaaatttgtaggca |
1033897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 215; Significance: 1e-118; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 13 - 271
Target Start/End: Original strand, 13895653 - 13895911
Alignment:
| Q |
13 |
attctcaattcacatctaacttaccttcaaatatttatgaatttcttcatcacaacgcctatgaaggttaacttttaaaccatgcttcatgtaaagtgtc |
112 |
Q |
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| T |
13895653 |
attctcaattcacatctaacttaccttcaaatatttatgaatttcttcatcacaacgcctatgaaggttaacttttaatccatgcttcatgtaaagtgtc |
13895752 |
T |
|
| Q |
113 |
aaagatagcttaggaacaatagggtgattctcaacaaccttaacatggtaacgaaatatgatgctagctgcaacatatttcatttgatagtatgcaaaat |
212 |
Q |
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| T |
13895753 |
aaagcaagcttaggaacaacaaggtgattttcaacaaccttaatatggtagcgaaatatgatgttagctgcaacatatttcatttgatagtatgcaaaat |
13895852 |
T |
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| Q |
213 |
ctttgcctaaacacaaccttggtcctccattaaaagcagtaaatttgtaggcagattcg |
271 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| || |||||||||||||||||| |
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| T |
13895853 |
ctttgcctaaacacaaccttggtcctccattaaaagctgtgaatttgtaggcagattcg |
13895911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 17 - 270
Target Start/End: Complemental strand, 13889047 - 13888794
Alignment:
| Q |
17 |
tcaattcacatctaacttaccttcaaatatttatgaatttcttcatcacaacgcctatgaaggttaacttttaaaccatgcttcatgtaaagtgtcaaag |
116 |
Q |
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||||||||| ||||||| | |||||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||| |
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| T |
13889047 |
tcaattcacttctaactaatcttcaagtatttatgaatttcttcatcacaacgcctatgaagattaacttttaatccatgtttcatgtaaagtgtcaaag |
13888948 |
T |
|
| Q |
117 |
atagcttaggaacaatagggtgattctcaacaaccttaacatggtaacgaaatatgatgctagctgcaacatatttcatttgatagtatgcaaaatcttt |
216 |
Q |
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| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
13888947 |
aaagcttaggaacaataaggtgattctcaacaaccttaacatggtaacgaaatatgatgctagctgcgacatatttcatttgatagtatgcaaaatcttt |
13888848 |
T |
|
| Q |
217 |
gcctaaacacaaccttggtcctccattaaaagcagtaaatttgtaggcagattc |
270 |
Q |
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||||||||||||||| ||||||||||| |||||||| |||||||| |||||||| |
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| T |
13888847 |
gcctaaacacaacctcggtcctccattgaaagcagtgaatttgtacgcagattc |
13888794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 11 - 252
Target Start/End: Complemental strand, 13891962 - 13891721
Alignment:
| Q |
11 |
ttattctcaattcacatctaacttaccttcaaatatttatgaatttcttcatcacaacgcctatgaaggttaacttttaaaccatgcttcatgtaaagtg |
110 |
Q |
| |
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||||| ||||||||| ||||||| | || || ||||||||||||| |||||||||||| | |||||| |||||||| || ||||| ||||||||||||| |
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| T |
13891962 |
ttattatcaattcacttctaactaatgtttaagtatttatgaattttttcatcacaacgtcgatgaagattaactttcaatccatgtttcatgtaaagtg |
13891863 |
T |
|
| Q |
111 |
tcaaagatagcttaggaacaatagggtgattctcaacaaccttaacatggtaacgaaatatgatgctagctgcaacatatttcatttgatagtatgcaaa |
210 |
Q |
| |
|
||||||| ||||||||||||| |||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
13891862 |
tcaaagaaagcttaggaacaacagggtgcttctcaacaaccttaacatggtaacgaaatatgatggtagctgcaacatatttcatttgatagtatgcaaa |
13891763 |
T |
|
| Q |
211 |
atctttgcctaaacacaaccttggtcctccattaaaagcagt |
252 |
Q |
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| |||||||||||||| |||||||||||||||| |||||||| |
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| T |
13891762 |
acctttgcctaaacacgaccttggtcctccattgaaagcagt |
13891721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 11 - 262
Target Start/End: Original strand, 13890481 - 13890730
Alignment:
| Q |
11 |
ttattctcaattcacatctaacttaccttcaaatatttatgaatttcttcatcacaacgcctatgaaggttaacttttaaaccatgcttcatgtaaagtg |
110 |
Q |
| |
|
|||||||||||| |||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||| ||| ||||||| || |
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| T |
13890481 |
ttattctcaattaacatctaacttaacttcaaatatttatgagtttcttcatcacaacgcctatgaaggttaacttttaatccatactttatgtaaaatg |
13890580 |
T |
|
| Q |
111 |
tcaaagatagcttaggaacaatagggtgattctcaacaaccttaacatggtaacgaaatatgatgctagctgcaacatatttcatttgatagtatgcaaa |
210 |
Q |
| |
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|||||| ||||||||||||| | ||||||| ||||||||||||||||| || | ||||| |||||||| |||| |||||||||||||||||||||||| |
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| T |
13890581 |
tcaaagtaagcttaggaacaacaaggtgattttcaacaaccttaacatgatagccaaataggatgctagttgca--atatttcatttgatagtatgcaaa |
13890678 |
T |
|
| Q |
211 |
atctttgcctaaacacaaccttggtcctccattaaaagcagtaaatttgtag |
262 |
Q |
| |
|
|||||||||||| ||||||||| ||| ||||||||||||||| || |||||| |
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| T |
13890679 |
atctttgcctaagcacaacctttgtcttccattaaaagcagtgaaattgtag |
13890730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 94 - 269
Target Start/End: Complemental strand, 13893450 - 13893275
Alignment:
| Q |
94 |
atgcttcatgtaaagtgtcaaagatagcttaggaacaatagggtgattctcaacaaccttaacatggtaacgaaatatgatgctagctgcaacatatttc |
193 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| | ||| ||||||||||||||||| ||||||| ||||||||||||||||||||| ||||||||||||| |
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| T |
13893450 |
atgcttcatgtaaagtgtcaaagaaagcttagaaccaacagggtgattctcaacaatcttaacacggtaacgaaatatgatgctagttgcaacatatttc |
13893351 |
T |
|
| Q |
194 |
atttgatagtatgcaaaatctttgcctaaacacaaccttggtcctccattaaaagcagtaaatttgtaggcagatt |
269 |
Q |
| |
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|||||| |||||||||||||||| ||||||||||||||| ||||| ||| ||||||| ||||||||||| ||||| |
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|
| T |
13893350 |
atttgaatgtatgcaaaatctttggctaaacacaaccttgatcctcgattgaaagcagcaaatttgtaggaagatt |
13893275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 167 - 262
Target Start/End: Original strand, 13892813 - 13892908
Alignment:
| Q |
167 |
aatatgatgctagctgcaacatatttcatttgatagtatgcaaaatctttgcctaaacacaaccttggtcctccattaaaagcagtaaatttgtag |
262 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||| | ||||||||||||| ||| ||||||||| |
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| T |
13892813 |
aatatgatgctagctgcaacatatttcgtttgatagtatgcaaaatctttacctaaacacaacctcgatcctccattaaaaatagtgaatttgtag |
13892908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 11 - 141
Target Start/End: Complemental strand, 13893600 - 13893470
Alignment:
| Q |
11 |
ttattctcaattcacatctaacttaccttcaaatatttatgaatttcttcatcacaacgcctatgaaggttaacttttaaaccatgcttcatgtaaagtg |
110 |
Q |
| |
|
||||| ||||||||| ||||||| | ||| ||| ||| |||||||||||| ||||||| ||||||||||||||||| || | |||||||| | |||||| |
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|
| T |
13893600 |
ttattatcaattcacttctaactaaacttaaaacattcatgaatttcttcttcacaacatctatgaaggttaactttcaatctatgcttcacgaaaagtg |
13893501 |
T |
|
| Q |
111 |
tcaaagatagcttaggaacaatagggtgatt |
141 |
Q |
| |
|
||||||| || |||| | ||| ||||||||| |
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|
| T |
13893500 |
tcaaagaaagtttagaaccaacagggtgatt |
13893470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 133 - 270
Target Start/End: Original strand, 28665751 - 28665888
Alignment:
| Q |
133 |
agggtgattctcaacaaccttaacatggtaacgaaatatgatgctagctgcaacatatttcatttgatagtatgcaaaatctttgcctaaacacaacctt |
232 |
Q |
| |
|
|||||||||||| || ||||| |||||||| | ||||||| ||||| |||||||||||||||||||| ||||||||||||||||||||||| |||| |
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| T |
28665751 |
agggtgattctccaccaccttcacatggtatctgtatatgatactagcagcaacatatttcatttgataatatgcaaaatctttgcctaaacataaccga |
28665850 |
T |
|
| Q |
233 |
ggtcctccattaaaagcagtaaatttgtaggcagattc |
270 |
Q |
| |
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||||| |||||||| ||||| |||||||| |||||||| |
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| T |
28665851 |
ggtccgccattaaatgcagtgaatttgtacgcagattc |
28665888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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