View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1907_low_20 (Length: 281)
Name: NF1907_low_20
Description: NF1907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1907_low_20 |
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Alignment Details
Target: chr7 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 71 - 266
Target Start/End: Original strand, 246403 - 246600
Alignment:
| Q |
71 |
aaaatacaataatgaaacacctgaacaaacagtaactacaatgaaaacacgtctaggcttatgaaaccaacgtttt--ttgaccttcttggttttggtct |
168 |
Q |
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| T |
246403 |
aaaatacaataatgaaacacctgaacaaacagtaactacaatgaaaacacgtctaggcttatgaaaccaacgttttttttgaccttcttggttttggtct |
246502 |
T |
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| Q |
169 |
gccacaattacaacaatgttgcacattcttagggtttttaaaacccagtgtacctaatctcttaaaaattgaagaaaataagaaaacccattaaagtt |
266 |
Q |
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| T |
246503 |
gccacaattacaacaatgttgcacattcttagggtttttaaaacccagtgtacctaatctcttaaaaattgaagaaaataagaaaacccattaaagtt |
246600 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.000000000006; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 26 - 78
Target Start/End: Original strand, 21960400 - 21960452
Alignment:
| Q |
26 |
aatcaaatgtgttcgcttcgtgtaaggaatagtttccatatttccaaaataca |
78 |
Q |
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| T |
21960400 |
aatcaaatgcgttcgcttcgtataaggaacagtttccatattcccaaaataca |
21960452 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 221 - 264
Target Start/End: Original strand, 21960809 - 21960853
Alignment:
| Q |
221 |
cctaatctcttaaaaattgaagaaaat-aagaaaacccattaaag |
264 |
Q |
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| T |
21960809 |
cctaatctcttagaaattgaagaaaatgaagaaaacccattaaag |
21960853 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 25 - 68
Target Start/End: Original strand, 29941372 - 29941415
Alignment:
| Q |
25 |
gaatcaaatgtgttcgcttcgtgtaaggaatagtttccatattt |
68 |
Q |
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| T |
29941372 |
gaatcacatgtgttcgatttgtgtaaggaatagtttccatattt |
29941415 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 78
Target Start/End: Complemental strand, 904367 - 904315
Alignment:
| Q |
26 |
aatcaaatgtgttcgcttcgtgtaaggaatagtttccatatttccaaaataca |
78 |
Q |
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||||||||| |||||||| || ||||||| |||||||||||| |||||||||| |
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| T |
904367 |
aatcaaatgcgttcgctttgtataaggaacagtttccatattcccaaaataca |
904315 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 221 - 264
Target Start/End: Complemental strand, 903958 - 903914
Alignment:
| Q |
221 |
cctaatctcttaaaaattgaagaaaat-aagaaaacccattaaag |
264 |
Q |
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|||||||||||| |||||||||||||| |||||||| |||||||| |
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| T |
903958 |
cctaatctcttagaaattgaagaaaatgaagaaaacacattaaag |
903914 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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