View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1907_low_28 (Length: 258)
Name: NF1907_low_28
Description: NF1907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1907_low_28 |
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| [»] scaffold0038 (2 HSPs) |
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Alignment Details
Target: scaffold0038 (Bit Score: 91; Significance: 3e-44; HSPs: 2)
Name: scaffold0038
Description:
Target: scaffold0038; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 18 - 136
Target Start/End: Complemental strand, 27157 - 27039
Alignment:
| Q |
18 |
cattgggagtgaagcttccgtcaaatttcatatattatcaacttcaacgtttcacaattcaactaaagatttaaataagctgtattattgtaacacacaa |
117 |
Q |
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||||||||||||| |||| |||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
27157 |
cattgggagtgaaacttctgtcacatttcatatcttatcaacttcaacgtttcacaattcaactaaagatttaaataagctgtattattttaacacacaa |
27058 |
T |
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| Q |
118 |
attcgtataaaaattataa |
136 |
Q |
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|||||||||| || ||||| |
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| T |
27057 |
attcgtataataaatataa |
27039 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0038; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 159 - 192
Target Start/End: Complemental strand, 25654 - 25621
Alignment:
| Q |
159 |
taattattctcttacgtaaaaaattctagaagac |
192 |
Q |
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||||||||||||||||| |||||||||||||||| |
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| T |
25654 |
taattattctcttacgtcaaaaattctagaagac |
25621 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 91; Significance: 3e-44; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 18 - 136
Target Start/End: Complemental strand, 28226659 - 28226541
Alignment:
| Q |
18 |
cattgggagtgaagcttccgtcaaatttcatatattatcaacttcaacgtttcacaattcaactaaagatttaaataagctgtattattgtaacacacaa |
117 |
Q |
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|
||||||||||||| |||| |||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
28226659 |
cattgggagtgaaacttctgtcacatttcatatcttatcaacttcaacgtttcacaattcaactaaagatttaaataagctgtattattttaacacacaa |
28226560 |
T |
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| Q |
118 |
attcgtataaaaattataa |
136 |
Q |
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|||||||||| || ||||| |
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| T |
28226559 |
attcgtataataaatataa |
28226541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 159 - 192
Target Start/End: Complemental strand, 28225156 - 28225123
Alignment:
| Q |
159 |
taattattctcttacgtaaaaaattctagaagac |
192 |
Q |
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|
||||||||||||||||| |||||||||||||||| |
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|
| T |
28225156 |
taattattctcttacgtcaaaaattctagaagac |
28225123 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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