View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1907_low_29 (Length: 254)
Name: NF1907_low_29
Description: NF1907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1907_low_29 |
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Alignment Details
Target: chr6 (Bit Score: 164; Significance: 9e-88; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 31742851 - 31742621
Alignment:
| Q |
1 |
aatgtattttttctattaataattttaaaatactagttgatattccaaaaatatccttggactaaactactcatatcttacattacagttgcctacaatt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| |||||||||| |
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| T |
31742851 |
aatgtattttttctattaataattttaaaatactagttgatattccaaaaatatccttggactaaactactccttccttacc--------gcctacaatt |
31742760 |
T |
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| Q |
101 |
aatgtaattctatcattaaagat---gtatgagtaccaattcaagcctcacaaacacgcctctccctcttcacaagaatacatcggttttattctggttt |
197 |
Q |
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||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
31742759 |
aatgtaattctatcattaaagctattgtatgagtaccaattcaagcctcacaaacacgcctctccctcttcacaagaatacatcggttttattatggttt |
31742660 |
T |
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| Q |
198 |
aatgtggctattgatattctcacaacttatttggatttc |
236 |
Q |
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|||||||||||||||||||||||| || ||||||||||| |
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| T |
31742659 |
aatgtggctattgatattctcacagctcatttggatttc |
31742621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 156; Significance: 6e-83; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 5165369 - 5165140
Alignment:
| Q |
1 |
aatgtattttttctattaataattttaaaatactagttgatattccaaaaatatccttggactaaactactcatatcttacattacagttgcctacaatt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||||||||| |
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| T |
5165369 |
aatgtattttttctattaataattttaaaatactagttgatattccaaaaatatccttggactaaactactcctaccttac--------tgcctacaatt |
5165278 |
T |
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| Q |
101 |
aatgtaattctatcattaaagat---gtatgagtaccaattcaagcctcacaaacacgcctctccctcttcacaagaatacatcggttttattctggttt |
197 |
Q |
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||||||||||||||||||||| | ||||||||| ||||||||||||||||||||| ||||||| |||||||||||||||||| ||||||||||||||| |
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| T |
5165277 |
aatgtaattctatcattaaagctattgtatgagtatcaattcaagcctcacaaacacacctctcc-tcttcacaagaatacatcagttttattctggttt |
5165179 |
T |
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| Q |
198 |
aatgtggctattgatattctcacaacttatttggatttc |
236 |
Q |
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| T |
5165178 |
aatgtggctattgatattctcacagctcatttggatttc |
5165140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 6 - 183
Target Start/End: Complemental strand, 27149962 - 27149782
Alignment:
| Q |
6 |
attttttctattaataattttaaaatactagttgatattccaaaaatatccttggactaaactactcatatcttacattacagttgcctacaattaatgt |
105 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| |||||||||||||||| |
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| T |
27149962 |
attttttctattaataattttaaaatactagttgatattccaaaaatatccttggactaaactactcctaccttacattacagctgcctacaattaatgt |
27149863 |
T |
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| Q |
106 |
aattctatcattaaag---atgtatgagtaccaattcaagcctcacaaacacgcctctccctcttcacaagaatacatcgg |
183 |
Q |
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| T |
27149862 |
aattctatcattaaagctattgtatgagtaccaattcaagcctcacaaacacgcctctccctcttcacaagaatacatcgg |
27149782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 1 - 181
Target Start/End: Complemental strand, 8435439 - 8435256
Alignment:
| Q |
1 |
aatgtattttttctattaataattttaaaatactagttgatattccaaaaatatccttggactaaactactcatatcttacattacagttgcctacaatt |
100 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| ||||||||||| |
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| T |
8435439 |
aatgtattttttctattaataattttaaaatactagttgatattccaaaaatatccttggactaaactactcctaccttacattacagctgcctacaatt |
8435340 |
T |
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| Q |
101 |
aatgtaattctatcattaaag---atgtatgagtaccaattcaagcctcacaaacacgcctctccctcttcacaagaatacatc |
181 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||| || |||||||||||||||||||||||| |
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| T |
8435339 |
aatgtaattctatcattaaagctattgtatgagtaccaattcaagcctcacaaacatgcttctccctcttcacaagaatacatc |
8435256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 4 - 190
Target Start/End: Original strand, 3804580 - 3804769
Alignment:
| Q |
4 |
gtattttttctattaataattttaaaatactagttgatattccaaaaatatccttggactaaactactcatatcttacattacagttgcctacaattaat |
103 |
Q |
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|||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || |||||||| ||| |||||||||||||| |
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| T |
3804580 |
gtatcttttctattaataattttaaaatactagttgatatttcaaaaatatccttggactaaactacttctaccttacattccagctgcctacaattaat |
3804679 |
T |
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| Q |
104 |
gtaattctatcattaaag---atgtatgagtaccaattcaagcctcacaaacacgcctctccctcttcacaagaatacatcggttttatt |
190 |
Q |
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|||||||||||||||||| || |||||| ||||| ||||||||||||||||| |||||||||||||||||||||||| ||||||||| |
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| T |
3804680 |
gtaattctatcattaaagctattgcatgagttccaatccaagcctcacaaacacgtctctccctcttcacaagaatacataggttttatt |
3804769 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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