View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1907_low_3 (Length: 484)
Name: NF1907_low_3
Description: NF1907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1907_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 444; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 1 - 464
Target Start/End: Complemental strand, 38835037 - 38834575
Alignment:
| Q |
1 |
agcattccaacaaaaagggtcatccaacaattcaccttcaaatggcaaaagctcaacctcagagagtgttatgtttgtacaagcaacagtgtcactacaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38835037 |
agcattccaacaaaaagggtcatccaacaattcaccttcaaatggcaaaagctcaacctcagagagtgttatgtttgtacaagcaacagtgtcactacaa |
38834938 |
T |
|
| Q |
101 |
gcaaaatgaataggagcagttctaacatcataagtacccttaatgtttttgtaggacacatcattaacatgtacagctgaagtttgatttagacattcct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38834937 |
gcaaaatgaataggagcagttctaacatcataagtacccttaatgtttttgtaggacacatcattaacatgtacagctgaagtttgatttagacattcct |
38834838 |
T |
|
| Q |
201 |
ttgtcaaacaatagtattggtctataaggatgcagtttcctacattctccatttgtatgttttcaaattttaaatttgacacagatcccattccaccttg |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
38834837 |
ttgtcaaacaatagtattggtctataaggatgcagtttcctacattctccatttgtatgttctcaaattttaaatttgacacagatcccattccaccttg |
38834738 |
T |
|
| Q |
301 |
ccatgtctttattcttagtccattgtctgattctcttatcactgtgtcacggactgttaagtttgagacacatgcttgagaattgtgcacaccaagactt |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38834737 |
ccatgtctttattcttagtccattgtctgattctcttatcactgtgtcacggactgttaagtttgagacacatgcttgagaattgtgcacaccaagactt |
38834638 |
T |
|
| Q |
401 |
cctatgctgtacaaaaattaacaaaacactaatcttagtgactcatgctgatatgtacatgtac |
464 |
Q |
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| T |
38834637 |
cctatgctgtac-aaaattaacaaaacactaatcttagtgacccatgttgatatgtacatgtac |
38834575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 154; Significance: 2e-81; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 1 - 410
Target Start/End: Original strand, 12315902 - 12316311
Alignment:
| Q |
1 |
agcattccaacaaaaagggtcatccaacaattcaccttcaaatggcaaaagctcaacctcagagagtgttatgtttgtacaagcaacagtgtcactacaa |
100 |
Q |
| |
|
|||||||||||||||||||||||| | |||||||||||| | |||||||| |||| ||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
12315902 |
agcattccaacaaaaagggtcatcaactaattcaccttcataaggcaaaagttcaatctcagagagtgttatgtttgtgcaagcaacagtgtcactacaa |
12316001 |
T |
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| Q |
101 |
gcaaaatgaataggagcagttctaacatcataagtacccttaatgtttttgtaggacacatcattaacatgtacagctgaagtttgatttagacattcct |
200 |
Q |
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|||||||| ||||||| ||||| |||||||| |||||||| || ||| ||||||| | || || |||| ||| ||||| ||||| || | ||| || | |
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| T |
12316002 |
gcaaaatgtataggaggtgttctcacatcatatgtaccctttatttttctgtaggagatattgtttacatatactgctgatgtttggttcatacactctt |
12316101 |
T |
|
| Q |
201 |
ttgtcaaacaatagtattggtctataaggatgcagtttcctacattctccatttgtatgttttcaaattttaaatttgacacagatcccattccaccttg |
300 |
Q |
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||| ||||| ||| |||||||||| ||| ||||||| ||||||||||||||| ||||| |||||| ||||| || || ||||| | |||||||| |
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| T |
12316102 |
ttgataaacagtagaattggtctatgttgatacagtttcttacattctccatttggatgttgtcaaatgttaaacctgttactgatcctgtaccaccttg |
12316201 |
T |
|
| Q |
301 |
ccatgtctttattcttagtccattgtctgattctcttatcactgtgtcacggactgttaagtttgagacacatgcttgagaattgtgcacaccaagactt |
400 |
Q |
| |
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|||||| || |||||||||||||||||||||||| |||| | || || |||||||||| ||||||||||||||| ||||| ||||| || ||||| ||| |
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| T |
12316202 |
ccatgttttgattcttagtccattgtctgattcttttatgattgagtttcggactgttaggtttgagacacatgcatgagagttgtgtactccaaggctt |
12316301 |
T |
|
| Q |
401 |
cctatgctgt |
410 |
Q |
| |
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|| ||||||| |
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|
| T |
12316302 |
ccaatgctgt |
12316311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 292 - 376
Target Start/End: Complemental strand, 38662295 - 38662211
Alignment:
| Q |
292 |
tccaccttgccatgtctttattcttagtccattgtctgattctcttatcactgtgtcacggactgttaagtttgagacacatgct |
376 |
Q |
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|||||||||||||||||| ||||||| ||||| |||||| | ||||| |||| ||| | ||||||| |||||| ||||||||| |
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| T |
38662295 |
tccaccttgccatgtcttgattcttaccccattatctgatacccttataactgagtccctcactgttatgtttgatacacatgct |
38662211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 49 - 116
Target Start/End: Original strand, 45101256 - 45101323
Alignment:
| Q |
49 |
aagctcaacctcagagagtgttatgtttgtacaagcaacagtgtcactacaagcaaaatgaataggag |
116 |
Q |
| |
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|||||||| || |||||||||||||| || |||| |||| |||||||||||||||||| ||||||| |
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| T |
45101256 |
aagctcaatttctgagagtgttatgttagtgcaagggacagagtcactacaagcaaaatgcataggag |
45101323 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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