View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1907_low_31 (Length: 250)

Name: NF1907_low_31
Description: NF1907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1907_low_31
NF1907_low_31
[»] chr6 (13 HSPs)
chr6 (87-250)||(27777445-27777607)
chr6 (17-59)||(7097872-7097914)
chr6 (17-59)||(8796269-8796311)
chr6 (17-58)||(11114785-11114826)
chr6 (17-59)||(31855038-31855080)
chr6 (17-58)||(22020496-22020537)
chr6 (17-58)||(25435631-25435672)
chr6 (18-58)||(20662059-20662099)
chr6 (18-58)||(29979024-29979064)
chr6 (23-58)||(24825391-24825426)
chr6 (17-59)||(643430-643472)
chr6 (17-58)||(18992123-18992164)
chr6 (18-59)||(24150962-24151003)
[»] chr3 (23 HSPs)
chr3 (13-59)||(48706845-48706891)
chr3 (17-60)||(54840126-54840169)
chr3 (17-59)||(29728097-29728139)
chr3 (17-59)||(38833883-38833925)
chr3 (17-59)||(45167519-45167561)
chr3 (13-58)||(34827469-34827514)
chr3 (13-58)||(53066586-53066631)
chr3 (17-60)||(21907216-21907259)
chr3 (17-59)||(10571143-10571185)
chr3 (17-59)||(32951135-32951177)
chr3 (18-59)||(18659273-18659314)
chr3 (18-58)||(7459820-7459860)
chr3 (18-58)||(8559005-8559045)
chr3 (17-60)||(10435339-10435382)
chr3 (17-59)||(17053084-17053126)
chr3 (13-59)||(54673994-54674040)
chr3 (23-60)||(1327309-1327346)
chr3 (18-59)||(37833121-37833162)
chr3 (17-58)||(46483768-46483809)
chr3 (17-58)||(51062610-51062651)
chr3 (18-59)||(52668485-52668526)
chr3 (23-59)||(18659051-18659087)
chr3 (23-59)||(43137850-43137886)
[»] chr2 (16 HSPs)
chr2 (13-59)||(34827128-34827174)
chr2 (17-59)||(7442890-7442932)
chr2 (17-58)||(27559795-27559836)
chr2 (17-58)||(42038743-42038784)
chr2 (18-61)||(18718460-18718503)
chr2 (18-61)||(23671597-23671640)
chr2 (17-59)||(4045232-4045274)
chr2 (18-59)||(41172756-41172797)
chr2 (17-58)||(44330604-44330645)
chr2 (18-58)||(14707535-14707575)
chr2 (18-58)||(40425249-40425289)
chr2 (18-56)||(44283281-44283319)
chr2 (18-59)||(3987231-3987272)
chr2 (18-59)||(14372298-14372339)
chr2 (13-58)||(24282960-24283005)
chr2 (17-58)||(32775903-32775944)
[»] chr1 (24 HSPs)
chr1 (17-59)||(32988348-32988390)
chr1 (13-59)||(37281308-37281354)
chr1 (18-61)||(48264808-48264851)
chr1 (17-59)||(25531998-25532040)
chr1 (17-58)||(1849921-1849962)
chr1 (17-58)||(29162063-29162104)
chr1 (17-58)||(30529050-30529091)
chr1 (17-58)||(38458950-38458991)
chr1 (17-58)||(49805252-49805293)
chr1 (17-58)||(50539480-50539521)
chr1 (18-58)||(50876585-50876625)
chr1 (17-59)||(3898570-3898612)
chr1 (17-59)||(16265253-16265295)
chr1 (17-59)||(16266382-16266424)
chr1 (13-59)||(24982567-24982613)
chr1 (17-59)||(26441854-26441896)
chr1 (17-59)||(43680290-43680332)
chr1 (17-59)||(45234848-45234890)
chr1 (18-59)||(42708721-42708762)
chr1 (18-59)||(52379210-52379251)
chr1 (23-59)||(3529175-3529211)
chr1 (23-59)||(23569900-23569936)
chr1 (22-58)||(39354264-39354300)
chr1 (23-59)||(50539259-50539295)
[»] chr8 (19 HSPs)
chr8 (17-58)||(30380750-30380791)
chr8 (17-58)||(3293101-3293142)
chr8 (17-56)||(38845827-38845866)
chr8 (13-59)||(31127804-31127850)
chr8 (13-59)||(38739873-38739919)
chr8 (18-59)||(2805475-2805516)
chr8 (18-59)||(45082033-45082074)
chr8 (18-58)||(23249073-23249113)
chr8 (18-58)||(30290145-30290185)
chr8 (17-59)||(8350879-8350921)
chr8 (17-59)||(18809496-18809538)
chr8 (17-59)||(43066346-43066388)
chr8 (17-58)||(2986545-2986586)
chr8 (17-58)||(14522599-14522640)
chr8 (18-59)||(29791163-29791204)
chr8 (17-58)||(37710119-37710160)
chr8 (23-59)||(2805702-2805738)
chr8 (23-59)||(3293328-3293364)
chr8 (23-59)||(40013650-40013686)
[»] chr5 (14 HSPs)
chr5 (17-62)||(32334634-32334679)
chr5 (17-59)||(32002013-32002055)
chr5 (17-58)||(39895001-39895042)
chr5 (17-59)||(29627488-29627530)
chr5 (17-58)||(5364644-5364685)
chr5 (18-59)||(35447996-35448037)
chr5 (18-59)||(42148528-42148569)
chr5 (17-59)||(970358-970400)
chr5 (17-59)||(4299832-4299874)
chr5 (17-59)||(5212921-5212963)
chr5 (17-59)||(22613708-22613750)
chr5 (17-58)||(40512680-40512721)
chr5 (23-59)||(27675766-27675802)
chr5 (18-58)||(38698184-38698224)
[»] chr7 (17 HSPs)
chr7 (17-59)||(19072989-19073031)
chr7 (17-59)||(31110845-31110887)
chr7 (17-58)||(4612087-4612128)
chr7 (18-62)||(37950941-37950985)
chr7 (17-60)||(47713500-47713543)
chr7 (17-58)||(31466358-31466399)
chr7 (17-58)||(36905746-36905787)
chr7 (13-58)||(42086638-42086683)
chr7 (18-58)||(36819917-36819957)
chr7 (18-58)||(47081201-47081241)
chr7 (17-59)||(10464114-10464156)
chr7 (17-59)||(48531542-48531584)
chr7 (18-59)||(2400506-2400547)
chr7 (17-58)||(23473969-23474010)
chr7 (17-58)||(34478008-34478049)
chr7 (18-58)||(36859208-36859248)
chr7 (18-58)||(42834292-42834332)
[»] chr4 (30 HSPs)
chr4 (17-58)||(1377251-1377292)
chr4 (17-58)||(5744083-5744124)
chr4 (17-59)||(45198339-45198381)
chr4 (18-59)||(3442343-3442384)
chr4 (18-59)||(3901138-3901179)
chr4 (18-59)||(5735492-5735533)
chr4 (17-58)||(6494810-6494851)
chr4 (17-58)||(7738819-7738860)
chr4 (13-58)||(37688033-37688078)
chr4 (18-59)||(47579507-47579548)
chr4 (18-58)||(21858919-21858959)
chr4 (18-58)||(21914782-21914822)
chr4 (18-58)||(28152212-28152252)
chr4 (17-60)||(4264354-4264397)
chr4 (23-62)||(40411406-40411445)
chr4 (17-59)||(4209579-4209621)
chr4 (17-59)||(18359972-18360014)
chr4 (17-59)||(36602914-36602956)
chr4 (17-58)||(19652256-19652297)
chr4 (18-59)||(26205703-26205744)
chr4 (17-58)||(46212350-46212391)
chr4 (18-59)||(46803853-46803894)
chr4 (23-59)||(5735270-5735306)
chr4 (17-61)||(19525711-19525755)
chr4 (18-58)||(20678588-20678628)
chr4 (23-59)||(26205930-26205966)
chr4 (23-59)||(28166273-28166309)
chr4 (23-59)||(39171184-39171220)
chr4 (23-59)||(39376669-39376705)
chr4 (23-59)||(45198566-45198602)
[»] scaffold0007 (1 HSPs)
scaffold0007 (17-59)||(15215-15257)
[»] scaffold0027 (1 HSPs)
scaffold0027 (13-55)||(117537-117579)
[»] scaffold0459 (1 HSPs)
scaffold0459 (17-50)||(12972-13005)
[»] scaffold0366 (2 HSPs)
scaffold0366 (17-50)||(10613-10646)
scaffold0366 (17-50)||(14279-14312)


Alignment Details
Target: chr6 (Bit Score: 126; Significance: 4e-65; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 87 - 250
Target Start/End: Complemental strand, 27777607 - 27777445
Alignment:
Q  87 tgcatagtggagtatt-atgattcgacgtacgcaagcattaacacattagtactattattcgacaaaaacacattaggtactattggtagagtgtgctgc 185  Q
    |||||||||||||||| ||||||||| ||||||| |||| |||||| |||||||||||||||||||||||||||||||||||||||||||  |||| |||    
T  27777607 tgcatagtggagtatttatgattcgaggtacgcatgcataaacacagtagtactattattcgacaaaaacacattaggtactattggtag--tgtgatgc 27777510  T
Q  186 cttttatttcttattataggtaaacattgtcctatgctttaaatgtaaaacctaaataactcatg 250  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27777509 cttttatttcttattataggtaaacattgtcctatgctttaaatgtaaaacctaaataactcatg 27777445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 17 - 59
Target Start/End: Complemental strand, 7097914 - 7097872
Alignment:
Q  17 tatattgtcaactggatcatttattaagggacggagggagtat 59  Q
    |||||||||||||| ||||||||||||||||||||||||||||    
T  7097914 tatattgtcaactgaatcatttattaagggacggagggagtat 7097872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 17 - 59
Target Start/End: Original strand, 8796269 - 8796311
Alignment:
Q  17 tatattgtcaactggatcatttattaagggacggagggagtat 59  Q
    ||||||||||||||| |||||||||||||||||||||||||||    
T  8796269 tatattgtcaactgggtcatttattaagggacggagggagtat 8796311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 17 - 58
Target Start/End: Original strand, 11114785 - 11114826
Alignment:
Q  17 tatattgtcaactggatcatttattaagggacggagggagta 58  Q
    |||||||||||||||||||||||||||| |||||||||||||    
T  11114785 tatattgtcaactggatcatttattaagagacggagggagta 11114826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 17 - 59
Target Start/End: Original strand, 31855038 - 31855080
Alignment:
Q  17 tatattgtcaactggatcatttattaagggacggagggagtat 59  Q
    ||||||||||||||  |||||||||||||||||||||||||||    
T  31855038 tatattgtcaactgagtcatttattaagggacggagggagtat 31855080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 58
Target Start/End: Original strand, 22020496 - 22020537
Alignment:
Q  17 tatattgtcaactggatcatttattaagggacggagggagta 58  Q
    ||||||||||||||| ||||||| ||||||||||||||||||    
T  22020496 tatattgtcaactgggtcatttaataagggacggagggagta 22020537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 58
Target Start/End: Original strand, 25435631 - 25435672
Alignment:
Q  17 tatattgtcaactggatcatttattaagggacggagggagta 58  Q
    ||||||||||||||| |||||||||||||||||||| |||||    
T  25435631 tatattgtcaactgggtcatttattaagggacggagagagta 25435672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 58
Target Start/End: Complemental strand, 20662099 - 20662059
Alignment:
Q  18 atattgtcaactggatcatttattaagggacggagggagta 58  Q
    |||||||||||| | ||||||||||||||||||||||||||    
T  20662099 atattgtcaactaggtcatttattaagggacggagggagta 20662059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 58
Target Start/End: Complemental strand, 29979064 - 29979024
Alignment:
Q  18 atattgtcaactggatcatttattaagggacggagggagta 58  Q
    |||||||||||| | ||||||||||||||||||||||||||    
T  29979064 atattgtcaactaggtcatttattaagggacggagggagta 29979024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 23 - 58
Target Start/End: Original strand, 24825391 - 24825426
Alignment:
Q  23 gtcaactggatcatttattaagggacggagggagta 58  Q
    ||||||||||||| ||||||||||||||||||||||    
T  24825391 gtcaactggatcacttattaagggacggagggagta 24825426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 59
Target Start/End: Complemental strand, 643472 - 643430
Alignment:
Q  17 tatattgtcaactggatcatttattaagggacggagggagtat 59  Q
    ||||||||||||||  ||||||||| |||||||||||||||||    
T  643472 tatattgtcaactgagtcatttatttagggacggagggagtat 643430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 58
Target Start/End: Original strand, 18992123 - 18992164
Alignment:
Q  17 tatattgtcaactggatcatttattaagggacggagggagta 58  Q
    ||||||||||||| | |||||||||||||||||||| |||||    
T  18992123 tatattgtcaactaggtcatttattaagggacggagcgagta 18992164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 59
Target Start/End: Original strand, 24150962 - 24151003
Alignment:
Q  18 atattgtcaactggatcatttattaagggacggagggagtat 59  Q
    ||||||||||||  || |||||||||||||||||||||||||    
T  24150962 atattgtcaactaaattatttattaagggacggagggagtat 24151003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 6e-18; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 13 - 59
Target Start/End: Complemental strand, 48706891 - 48706845
Alignment:
Q  13 aatatatattgtcaactggatcatttattaagggacggagggagtat 59  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  48706891 aatatatattgtcaactggatcatttattaagggacggagggagtat 48706845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 17 - 60
Target Start/End: Complemental strand, 54840169 - 54840126
Alignment:
Q  17 tatattgtcaactggatcatttattaagggacggagggagtatc 60  Q
    ||||||||||||||| ||||||||||||||||||||||||||||    
T  54840169 tatattgtcaactgggtcatttattaagggacggagggagtatc 54840126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 17 - 59
Target Start/End: Complemental strand, 29728139 - 29728097
Alignment:
Q  17 tatattgtcaactggatcatttattaagggacggagggagtat 59  Q
    ||||||||||||| |||||||||||||||||||||||||||||    
T  29728139 tatattgtcaactagatcatttattaagggacggagggagtat 29728097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 17 - 59
Target Start/End: Original strand, 38833883 - 38833925
Alignment:
Q  17 tatattgtcaactggatcatttattaagggacggagggagtat 59  Q
    ||||||||||||||| |||||||||||||||||||||||||||    
T  38833883 tatattgtcaactgggtcatttattaagggacggagggagtat 38833925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 17 - 59
Target Start/End: Original strand, 45167519 - 45167561
Alignment:
Q  17 tatattgtcaactggatcatttattaagggacggagggagtat 59  Q
    |||||||||||||||||||| ||||||||||||||||||||||    
T  45167519 tatattgtcaactggatcatatattaagggacggagggagtat 45167561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 13 - 58
Target Start/End: Original strand, 34827469 - 34827514
Alignment:
Q  13 aatatatattgtcaactggatcatttattaagggacggagggagta 58  Q
    ||||||||||||||||| | ||||||||||||||||||||||||||    
T  34827469 aatatatattgtcaactaggtcatttattaagggacggagggagta 34827514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 13 - 58
Target Start/End: Original strand, 53066586 - 53066631
Alignment:
Q  13 aatatatattgtcaactggatcatttattaagggacggagggagta 58  Q
    ||||||||||||||||| |||||| |||||||||||||||||||||    
T  53066586 aatatatattgtcaactagatcatctattaagggacggagggagta 53066631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 60
Target Start/End: Original strand, 21907216 - 21907259
Alignment:
Q  17 tatattgtcaactggatcatttattaagggacggagggagtatc 60  Q
    ||||||||||||||  ||||||||||||||||||||||||||||    
T  21907216 tatattgtcaactgagtcatttattaagggacggagggagtatc 21907259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 17 - 59
Target Start/End: Complemental strand, 10571185 - 10571143
Alignment:
Q  17 tatattgtcaactggatcatttattaagggacggagggagtat 59  Q
    ||||||||||||||| | |||||||||||||||||||||||||    
T  10571185 tatattgtcaactgggttatttattaagggacggagggagtat 10571143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 17 - 59
Target Start/End: Complemental strand, 32951177 - 32951135
Alignment:
Q  17 tatattgtcaactggatcatttattaagggacggagggagtat 59  Q
    ||||||||||||| ||||||||||| |||||||||||||||||    
T  32951177 tatattgtcaactagatcatttattgagggacggagggagtat 32951135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 59
Target Start/End: Original strand, 18659273 - 18659314
Alignment:
Q  18 atattgtcaactggatcatttattaagggacggagggagtat 59  Q
    |||||||||||| | |||||||||||||||||||||||||||    
T  18659273 atattgtcaactaggtcatttattaagggacggagggagtat 18659314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 58
Target Start/End: Complemental strand, 7459860 - 7459820
Alignment:
Q  18 atattgtcaactggatcatttattaagggacggagggagta 58  Q
    |||||||||||| | ||||||||||||||||||||||||||    
T  7459860 atattgtcaactaggtcatttattaagggacggagggagta 7459820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 58
Target Start/End: Complemental strand, 8559045 - 8559005
Alignment:
Q  18 atattgtcaactggatcatttattaagggacggagggagta 58  Q
    |||||||||||| | ||||||||||||||||||||||||||    
T  8559045 atattgtcaactaggtcatttattaagggacggagggagta 8559005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 60
Target Start/End: Original strand, 10435339 - 10435382
Alignment:
Q  17 tatattgtcaactggatcatttattaagggacggagggagtatc 60  Q
    ||||||||||||| | ||||||||| ||||||||||||||||||    
T  10435339 tatattgtcaactaggtcatttattgagggacggagggagtatc 10435382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 59
Target Start/End: Original strand, 17053084 - 17053126
Alignment:
Q  17 tatattgtcaactggatcatttattaagggacggagggagtat 59  Q
    ||||||||||||||| ||||||||| |||||||||| ||||||    
T  17053084 tatattgtcaactgggtcatttattgagggacggagagagtat 17053126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 59
Target Start/End: Original strand, 54673994 - 54674040
Alignment:
Q  13 aatatatattgtcaactggatcatttattaagggacggagggagtat 59  Q
    |||||||||||||||   ||||||||||| |||||||||||||||||    
T  54673994 aatatatattgtcaaacagatcatttatttagggacggagggagtat 54674040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 23 - 60
Target Start/End: Complemental strand, 1327346 - 1327309
Alignment:
Q  23 gtcaactggatcatttattaagggacggagggagtatc 60  Q
    ||||||| ||||||||||| ||||||||||||||||||    
T  1327346 gtcaactagatcatttatttagggacggagggagtatc 1327309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 59
Target Start/End: Original strand, 37833121 - 37833162
Alignment:
Q  18 atattgtcaactggatcatttattaagggacggagggagtat 59  Q
    ||||||| |||| | |||||||||||||||||||||||||||    
T  37833121 atattgttaactaggtcatttattaagggacggagggagtat 37833162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 58
Target Start/End: Original strand, 46483768 - 46483809
Alignment:
Q  17 tatattgtcaactggatcatttattaagggacggagggagta 58  Q
    ||||||||||||| |||||| ||||||||||| |||||||||    
T  46483768 tatattgtcaactagatcatctattaagggacagagggagta 46483809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 58
Target Start/End: Original strand, 51062610 - 51062651
Alignment:
Q  17 tatattgtcaactggatcatttattaagggacggagggagta 58  Q
    |||||| |||||||  ||||||||||||||||||||||||||    
T  51062610 tatattatcaactgagtcatttattaagggacggagggagta 51062651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 59
Target Start/End: Complemental strand, 52668526 - 52668485
Alignment:
Q  18 atattgtcaactggatcatttattaagggacggagggagtat 59  Q
    |||||||||||| | | |||||||||||||||||||||||||    
T  52668526 atattgtcaactaggtgatttattaagggacggagggagtat 52668485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 59
Target Start/End: Complemental strand, 18659087 - 18659051
Alignment:
Q  23 gtcaactggatcatttattaagggacggagggagtat 59  Q
    ||||||| ||||||||||| |||||||||||||||||    
T  18659087 gtcaactagatcatttatttagggacggagggagtat 18659051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 59
Target Start/End: Complemental strand, 43137886 - 43137850
Alignment:
Q  23 gtcaactggatcatttattaagggacggagggagtat 59  Q
    ||||||| ||||||||||| |||||||||||||||||    
T  43137886 gtcaactagatcatttatttagggacggagggagtat 43137850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 13 - 59
Target Start/End: Original strand, 34827128 - 34827174
Alignment:
Q  13 aatatatattgtcaactggatcatttattaagggacggagggagtat 59  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||    
T  34827128 aatatatattgtcaactgggtcatttattaagggacggagggagtat 34827174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 17 - 59
Target Start/End: Complemental strand, 7442932 - 7442890
Alignment:
Q  17 tatattgtcaactggatcatttattaagggacggagggagtat 59  Q
    ||||||||||||| |||||||||||||||||||||||||||||    
T  7442932 tatattgtcaactagatcatttattaagggacggagggagtat 7442890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 17 - 58
Target Start/End: Original strand, 27559795 - 27559836
Alignment:
Q  17 tatattgtcaactggatcatttattaagggacggagggagta 58  Q
    ||||||||||||||| ||||||||||||||||||||||||||    
T  27559795 tatattgtcaactgggtcatttattaagggacggagggagta 27559836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 17 - 58
Target Start/End: Original strand, 42038743 - 42038784
Alignment:
Q  17 tatattgtcaactggatcatttattaagggacggagggagta 58  Q
    |||||||||||||| |||||||||||||||||||||||||||    
T  42038743 tatattgtcaactgaatcatttattaagggacggagggagta 42038784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 61
Target Start/End: Original strand, 18718460 - 18718503
Alignment:
Q  18 atattgtcaactggatcatttattaagggacggagggagtatct 61  Q
    |||||||||||| | |||||||||||||||||||||||||||||    
T  18718460 atattgtcaactaggtcatttattaagggacggagggagtatct 18718503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 61
Target Start/End: Original strand, 23671597 - 23671640
Alignment:
Q  18 atattgtcaactggatcatttattaagggacggagggagtatct 61  Q
    |||||||||||| | |||||||||||||||||||||||||||||    
T  23671597 atattgtcaactaggtcatttattaagggacggagggagtatct 23671640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 17 - 59
Target Start/End: Complemental strand, 4045274 - 4045232
Alignment:
Q  17 tatattgtcaactggatcatttattaagggacggagggagtat 59  Q
    ||||||||||| ||| |||||||||||||||||||||||||||    
T  4045274 tatattgtcaaatgggtcatttattaagggacggagggagtat 4045232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 59
Target Start/End: Complemental strand, 41172797 - 41172756
Alignment:
Q  18 atattgtcaactggatcatttattaagggacggagggagtat 59  Q
    |||||||||||| |||||||||||||||||||| ||||||||    
T  41172797 atattgtcaactagatcatttattaagggacggggggagtat 41172756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 58
Target Start/End: Original strand, 44330604 - 44330645
Alignment:
Q  17 tatattgtcaactggatcatttattaagggacggagggagta 58  Q
    ||||||||||||||| ||||||| ||||||||||||||||||    
T  44330604 tatattgtcaactgggtcatttaataagggacggagggagta 44330645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 58
Target Start/End: Complemental strand, 14707575 - 14707535
Alignment:
Q  18 atattgtcaactggatcatttattaagggacggagggagta 58  Q
    |||||||||||| | ||||||||||||||||||||||||||    
T  14707575 atattgtcaactaggtcatttattaagggacggagggagta 14707535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 58
Target Start/End: Complemental strand, 40425289 - 40425249
Alignment:
Q  18 atattgtcaactggatcatttattaagggacggagggagta 58  Q
    |||||||||||| | ||||||||||||||||||||||||||    
T  40425289 atattgtcaactaggtcatttattaagggacggagggagta 40425249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 56
Target Start/End: Complemental strand, 44283319 - 44283281
Alignment:
Q  18 atattgtcaactggatcatttattaagggacggagggag 56  Q
    |||||||||||| | ||||||||||||||||||||||||    
T  44283319 atattgtcaactaggtcatttattaagggacggagggag 44283281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 59
Target Start/End: Complemental strand, 3987272 - 3987231
Alignment:
Q  18 atattgtcaactggatcatttattaagggacggagggagtat 59  Q
    ||||||||||||   |||||||||||||||||||||||||||    
T  3987272 atattgtcaactaagtcatttattaagggacggagggagtat 3987231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 59
Target Start/End: Original strand, 14372298 - 14372339
Alignment:
Q  18 atattgtcaactggatcatttattaagggacggagggagtat 59  Q
    |||||||||| | | |||||||||||||||||||||||||||    
T  14372298 atattgtcaattaggtcatttattaagggacggagggagtat 14372339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 58
Target Start/End: Complemental strand, 24283005 - 24282960
Alignment:
Q  13 aatatatattgtcaactggatcatttattaagggacggagggagta 58  Q
    ||||||||||||||||| |||||| |||| ||||||||| ||||||    
T  24283005 aatatatattgtcaactagatcatctattgagggacggaaggagta 24282960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 58
Target Start/End: Complemental strand, 32775944 - 32775903
Alignment:
Q  17 tatattgtcaactggatcatttattaagggacggagggagta 58  Q
    ||||||||||||||| |||| |||| ||||||||||||||||    
T  32775944 tatattgtcaactgggtcatctattgagggacggagggagta 32775903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 17 - 59
Target Start/End: Complemental strand, 32988390 - 32988348
Alignment:
Q  17 tatattgtcaactggatcatttattaagggacggagggagtat 59  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  32988390 tatattgtcaactggatcatttattaagggacggagggagtat 32988348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 13 - 59
Target Start/End: Original strand, 37281308 - 37281354
Alignment:
Q  13 aatatatattgtcaactggatcatttattaagggacggagggagtat 59  Q
    ||||||||||||||||| |||||| ||||||||||||||||||||||    
T  37281308 aatatatattgtcaactagatcatctattaagggacggagggagtat 37281354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 61
Target Start/End: Complemental strand, 48264851 - 48264808
Alignment:
Q  18 atattgtcaactggatcatttattaagggacggagggagtatct 61  Q
    |||||||||||| | |||||||||||||||||||||||||||||    
T  48264851 atattgtcaactaggtcatttattaagggacggagggagtatct 48264808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 17 - 59
Target Start/End: Original strand, 25531998 - 25532040
Alignment:
Q  17 tatattgtcaactggatcatttattaagggacggagggagtat 59  Q
    ||||||||||||| | |||||||||||||||||||||||||||    
T  25531998 tatattgtcaactaggtcatttattaagggacggagggagtat 25532040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 58
Target Start/End: Original strand, 1849921 - 1849962
Alignment:
Q  17 tatattgtcaactggatcatttattaagggacggagggagta 58  Q
    ||||||||||||||| ||||||||||||||||||| ||||||    
T  1849921 tatattgtcaactgggtcatttattaagggacggatggagta 1849962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 58
Target Start/End: Original strand, 29162063 - 29162104
Alignment:
Q  17 tatattgtcaactggatcatttattaagggacggagggagta 58  Q
    ||||||||||||| |||| |||||||||||||||||||||||    
T  29162063 tatattgtcaactagatcgtttattaagggacggagggagta 29162104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 58
Target Start/End: Complemental strand, 30529091 - 30529050
Alignment:
Q  17 tatattgtcaactggatcatttattaagggacggagggagta 58  Q
    ||||||||||||| | ||||||||||||||||||||||||||    
T  30529091 tatattgtcaactaggtcatttattaagggacggagggagta 30529050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 58
Target Start/End: Original strand, 38458950 - 38458991
Alignment:
Q  17 tatattgtcaactggatcatttattaagggacggagggagta 58  Q
    ||||||||||||||| ||||||||||||||| ||||||||||    
T  38458950 tatattgtcaactgggtcatttattaagggatggagggagta 38458991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 58
Target Start/End: Complemental strand, 49805293 - 49805252
Alignment:
Q  17 tatattgtcaactggatcatttattaagggacggagggagta 58  Q
    ||||||||||||||| ||||||||||||| ||||||||||||    
T  49805293 tatattgtcaactgggtcatttattaaggaacggagggagta 49805252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 58
Target Start/End: Original strand, 50539480 - 50539521
Alignment:
Q  17 tatattgtcaactggatcatttattaagggacggagggagta 58  Q
    ||||||||||||||  ||||||||||||||||||||||||||    
T  50539480 tatattgtcaactgagtcatttattaagggacggagggagta 50539521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 58
Target Start/End: Original strand, 50876585 - 50876625
Alignment:
Q  18 atattgtcaactggatcatttattaagggacggagggagta 58  Q
    |||||||||||| | ||||||||||||||||||||||||||    
T  50876585 atattgtcaactaggtcatttattaagggacggagggagta 50876625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 59
Target Start/End: Complemental strand, 3898612 - 3898570
Alignment:
Q  17 tatattgtcaactggatcatttattaagggacggagggagtat 59  Q
    ||||||||||||| | ||||||||| |||||||||||||||||    
T  3898612 tatattgtcaactaggtcatttattgagggacggagggagtat 3898570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 59
Target Start/End: Original strand, 16265253 - 16265295
Alignment:
Q  17 tatattgtcaactggatcatttattaagggacggagggagtat 59  Q
    ||||||||||||| | ||||||||| |||||||||||||||||    
T  16265253 tatattgtcaactaggtcatttattgagggacggagggagtat 16265295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 59
Target Start/End: Original strand, 16266382 - 16266424
Alignment:
Q  17 tatattgtcaactggatcatttattaagggacggagggagtat 59  Q
    ||||||||||||| | ||||||||| |||||||||||||||||    
T  16266382 tatattgtcaactaggtcatttattgagggacggagggagtat 16266424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 59
Target Start/End: Original strand, 24982567 - 24982613
Alignment:
Q  13 aatatatattgtcaactggatcatttattaagggacggagggagtat 59  Q
    ||||||||||||||||  | ||||||||| |||||||||||||||||    
T  24982567 aatatatattgtcaacaaggtcatttattgagggacggagggagtat 24982613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 59
Target Start/End: Original strand, 26441854 - 26441896
Alignment:
Q  17 tatattgtcaactggatcatttattaagggacggagggagtat 59  Q
    ||||||||||||| | ||||||||| |||||||||||||||||    
T  26441854 tatattgtcaactaggtcatttattgagggacggagggagtat 26441896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 59
Target Start/End: Original strand, 43680290 - 43680332
Alignment:
Q  17 tatattgtcaactggatcatttattaagggacggagggagtat 59  Q
    ||||||||||||| | ||||||||| |||||||||||||||||    
T  43680290 tatattgtcaactaggtcatttattgagggacggagggagtat 43680332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 59
Target Start/End: Complemental strand, 45234890 - 45234848
Alignment:
Q  17 tatattgtcaactggatcatttattaagggacggagggagtat 59  Q
    ||||||||||||| | |||||||||||| ||||||||||||||    
T  45234890 tatattgtcaactaggtcatttattaagagacggagggagtat 45234848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 59
Target Start/End: Original strand, 42708721 - 42708762
Alignment:
Q  18 atattgtcaactggatcatttattaagggacggagggagtat 59  Q
    |||||||||||| | ||||||||||||||||||| |||||||    
T  42708721 atattgtcaactaggtcatttattaagggacggatggagtat 42708762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 59
Target Start/End: Original strand, 52379210 - 52379251
Alignment:
Q  18 atattgtcaactggatcatttattaagggacggagggagtat 59  Q
    |||||||||||| | ||||||||||| |||||||||||||||    
T  52379210 atattgtcaactaggtcatttattaaaggacggagggagtat 52379251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 59
Target Start/End: Complemental strand, 3529211 - 3529175
Alignment:
Q  23 gtcaactggatcatttattaagggacggagggagtat 59  Q
    ||||||| ||||||| |||||||||||||||||||||    
T  3529211 gtcaactagatcattaattaagggacggagggagtat 3529175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 59
Target Start/End: Original strand, 23569900 - 23569936
Alignment:
Q  23 gtcaactggatcatttattaagggacggagggagtat 59  Q
    ||||||| ||||||||||| |||||||||||||||||    
T  23569900 gtcaactagatcatttattgagggacggagggagtat 23569936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 58
Target Start/End: Complemental strand, 39354300 - 39354264
Alignment:
Q  22 tgtcaactggatcatttattaagggacggagggagta 58  Q
    |||||||| | ||||||||||||||||||||||||||    
T  39354300 tgtcaactaggtcatttattaagggacggagggagta 39354264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 59
Target Start/End: Complemental strand, 50539295 - 50539259
Alignment:
Q  23 gtcaactggatcatttattaagggacggagggagtat 59  Q
    ||||||| ||||||||||| |||||||||||||||||    
T  50539295 gtcaactagatcatttatttagggacggagggagtat 50539259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 17 - 58
Target Start/End: Original strand, 30380750 - 30380791
Alignment:
Q  17 tatattgtcaactggatcatttattaagggacggagggagta 58  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  30380750 tatattgtcaactggatcatttattaagggacggagggagta 30380791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 17 - 58
Target Start/End: Complemental strand, 3293142 - 3293101
Alignment:
Q  17 tatattgtcaactggatcatttattaagggacggagggagta 58  Q
    ||||||||||||||| ||||||||||||||||||||||||||    
T  3293142 tatattgtcaactgggtcatttattaagggacggagggagta 3293101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 56
Target Start/End: Original strand, 38845827 - 38845866
Alignment:
Q  17 tatattgtcaactggatcatttattaagggacggagggag 56  Q
    ||||||||||||||| ||||||||||||||||||||||||    
T  38845827 tatattgtcaactgggtcatttattaagggacggagggag 38845866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 13 - 59
Target Start/End: Complemental strand, 31127850 - 31127804
Alignment:
Q  13 aatatatattgtcaactggatcatttattaagggacggagggagtat 59  Q
    ||||||||||||||||| | ||||||||| |||||||||||||||||    
T  31127850 aatatatattgtcaactaggtcatttattgagggacggagggagtat 31127804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 13 - 59
Target Start/End: Original strand, 38739873 - 38739919
Alignment:
Q  13 aatatatattgtcaactggatcatttattaagggacggagggagtat 59  Q
    ||||||||||||||||||| ||||||||||  |||||||||||||||    
T  38739873 aatatatattgtcaactgggtcatttattaccggacggagggagtat 38739919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 59
Target Start/End: Complemental strand, 2805516 - 2805475
Alignment:
Q  18 atattgtcaactggatcatttattaagggacggagggagtat 59  Q
    |||||||||||| | |||||||||||||||||||||||||||    
T  2805516 atattgtcaactaggtcatttattaagggacggagggagtat 2805475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 59
Target Start/End: Original strand, 45082033 - 45082074
Alignment:
Q  18 atattgtcaactggatcatttattaagggacggagggagtat 59  Q
    |||||||||||| | |||||||||||||||||||||||||||    
T  45082033 atattgtcaactaggtcatttattaagggacggagggagtat 45082074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 58
Target Start/End: Original strand, 23249073 - 23249113
Alignment:
Q  18 atattgtcaactggatcatttattaagggacggagggagta 58  Q
    |||||||||||| | ||||||||||||||||||||||||||    
T  23249073 atattgtcaactaggtcatttattaagggacggagggagta 23249113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 58
Target Start/End: Original strand, 30290145 - 30290185
Alignment:
Q  18 atattgtcaactggatcatttattaagggacggagggagta 58  Q
    |||||||||||| | ||||||||||||||||||||||||||    
T  30290145 atattgtcaactaggtcatttattaagggacggagggagta 30290185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 59
Target Start/End: Complemental strand, 8350921 - 8350879
Alignment:
Q  17 tatattgtcaactggatcatttattaagggacggagggagtat 59  Q
    ||||||||||||| | ||||||||||||||| |||||||||||    
T  8350921 tatattgtcaactaggtcatttattaagggatggagggagtat 8350879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 59
Target Start/End: Original strand, 18809496 - 18809538
Alignment:
Q  17 tatattgtcaactggatcatttattaagggacggagggagtat 59  Q
    ||||||||||||| | ||||||||| |||||||||||||||||    
T  18809496 tatattgtcaactaggtcatttattgagggacggagggagtat 18809538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 59
Target Start/End: Original strand, 43066346 - 43066388
Alignment:
Q  17 tatattgtcaactggatcatttattaagggacggagggagtat 59  Q
    ||||||||| ||| | |||||||||||||||||||||||||||    
T  43066346 tatattgtcgactaggtcatttattaagggacggagggagtat 43066388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 58
Target Start/End: Original strand, 2986545 - 2986586
Alignment:
Q  17 tatattgtcaactggatcatttattaagggacggagggagta 58  Q
    |||||||||||||   ||||||||||||||||||||||||||    
T  2986545 tatattgtcaactaagtcatttattaagggacggagggagta 2986586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 58
Target Start/End: Original strand, 14522599 - 14522640
Alignment:
Q  17 tatattgtcaactggatcatttattaagggacggagggagta 58  Q
    ||||||||||||| | |||| |||||||||||||||||||||    
T  14522599 tatattgtcaactaggtcatctattaagggacggagggagta 14522640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 59
Target Start/End: Original strand, 29791163 - 29791204
Alignment:
Q  18 atattgtcaactggatcatttattaagggacggagggagtat 59  Q
    |||||||||||| | ||||||||||||||||| |||||||||    
T  29791163 atattgtcaactaggtcatttattaagggacgtagggagtat 29791204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 58
Target Start/End: Original strand, 37710119 - 37710160
Alignment:
Q  17 tatattgtcaactggatcatttattaagggacggagggagta 58  Q
    ||||||||||||||  ||||||||||||||||||| ||||||    
T  37710119 tatattgtcaactgagtcatttattaagggacggatggagta 37710160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 59
Target Start/End: Original strand, 2805702 - 2805738
Alignment:
Q  23 gtcaactggatcatttattaagggacggagggagtat 59  Q
    ||||||||| ||||||||| |||||||||||||||||    
T  2805702 gtcaactgggtcatttatttagggacggagggagtat 2805738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 59
Target Start/End: Original strand, 3293328 - 3293364
Alignment:
Q  23 gtcaactggatcatttattaagggacggagggagtat 59  Q
    ||||||| ||||||||||| |||||||||||||||||    
T  3293328 gtcaactagatcatttatttagggacggagggagtat 3293364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 59
Target Start/End: Complemental strand, 40013686 - 40013650
Alignment:
Q  23 gtcaactggatcatttattaagggacggagggagtat 59  Q
    ||||||| | |||||||||||||||||||||||||||    
T  40013686 gtcaactaggtcatttattaagggacggagggagtat 40013650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 17 - 62
Target Start/End: Complemental strand, 32334679 - 32334634
Alignment:
Q  17 tatattgtcaactggatcatttattaagggacggagggagtatcta 62  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||    
T  32334679 tatattgtcaactgggtcatttattaagggacggagggagtatcta 32334634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 17 - 59
Target Start/End: Complemental strand, 32002055 - 32002013
Alignment:
Q  17 tatattgtcaactggatcatttattaagggacggagggagtat 59  Q
    ||||||||||||||| |||||||||||||||||||||||||||    
T  32002055 tatattgtcaactgggtcatttattaagggacggagggagtat 32002013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 17 - 58
Target Start/End: Original strand, 39895001 - 39895042
Alignment:
Q  17 tatattgtcaactggatcatttattaagggacggagggagta 58  Q
    ||||||||||||||| ||||||||||||||||||||||||||    
T  39895001 tatattgtcaactgggtcatttattaagggacggagggagta 39895042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 17 - 59
Target Start/End: Original strand, 29627488 - 29627530
Alignment:
Q  17 tatattgtcaactggatcatttattaagggacggagggagtat 59  Q
    ||||||||||||||| ||||||||| |||||||||||||||||    
T  29627488 tatattgtcaactgggtcatttatttagggacggagggagtat 29627530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 58
Target Start/End: Original strand, 5364644 - 5364685
Alignment:
Q  17 tatattgtcaactggatcatttattaagggacggagggagta 58  Q
    ||||||||||||||| |||||||||||||||||||| |||||    
T  5364644 tatattgtcaactgggtcatttattaagggacggagagagta 5364685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 59
Target Start/End: Complemental strand, 35448037 - 35447996
Alignment:
Q  18 atattgtcaactggatcatttattaagggacggagggagtat 59  Q
    |||||||||||| | |||||||||||||||||||||||||||    
T  35448037 atattgtcaactaggtcatttattaagggacggagggagtat 35447996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 59
Target Start/End: Original strand, 42148528 - 42148569
Alignment:
Q  18 atattgtcaactggatcatttattaagggacggagggagtat 59  Q
    |||||||||||| | |||||||||||||||||||||||||||    
T  42148528 atattgtcaactaggtcatttattaagggacggagggagtat 42148569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 59
Target Start/End: Original strand, 970358 - 970400
Alignment:
Q  17 tatattgtcaactggatcatttattaagggacggagggagtat 59  Q
    ||||||||||||| | ||||||||| |||||||||||||||||    
T  970358 tatattgtcaactaggtcatttattgagggacggagggagtat 970400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 59
Target Start/End: Complemental strand, 4299874 - 4299832
Alignment:
Q  17 tatattgtcaactggatcatttattaagggacggagggagtat 59  Q
    ||||||||||||| | ||||||||| |||||||||||||||||    
T  4299874 tatattgtcaactaggtcatttattgagggacggagggagtat 4299832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 59
Target Start/End: Complemental strand, 5212963 - 5212921
Alignment:
Q  17 tatattgtcaactggatcatttattaagggacggagggagtat 59  Q
    ||||||||||||| | |||||||||||| ||||||||||||||    
T  5212963 tatattgtcaactaggtcatttattaagagacggagggagtat 5212921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 59
Target Start/End: Complemental strand, 22613750 - 22613708
Alignment:
Q  17 tatattgtcaactggatcatttattaagggacggagggagtat 59  Q
    ||||||||||||| | ||||||||| |||||||||||||||||    
T  22613750 tatattgtcaactaggtcatttattgagggacggagggagtat 22613708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 58
Target Start/End: Complemental strand, 40512721 - 40512680
Alignment:
Q  17 tatattgtcaactggatcatttattaagggacggagggagta 58  Q
    ||||||||||||||  |||||||||||||||||||| |||||    
T  40512721 tatattgtcaactgagtcatttattaagggacggagagagta 40512680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 59
Target Start/End: Original strand, 27675766 - 27675802
Alignment:
Q  23 gtcaactggatcatttattaagggacggagggagtat 59  Q
    ||||||||  |||||||||||||||||||||||||||    
T  27675766 gtcaactgtgtcatttattaagggacggagggagtat 27675802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 58
Target Start/End: Original strand, 38698184 - 38698224
Alignment:
Q  18 atattgtcaactggatcatttattaagggacggagggagta 58  Q
    ||||||||||||   ||||||||||||||||||||||||||    
T  38698184 atattgtcaactaagtcatttattaagggacggagggagta 38698224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 17 - 59
Target Start/End: Original strand, 19072989 - 19073031
Alignment:
Q  17 tatattgtcaactggatcatttattaagggacggagggagtat 59  Q
    ||||||||||||||| |||||||||||||||||||||||||||    
T  19072989 tatattgtcaactgggtcatttattaagggacggagggagtat 19073031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 17 - 59
Target Start/End: Original strand, 31110845 - 31110887
Alignment:
Q  17 tatattgtcaactggatcatttattaagggacggagggagtat 59  Q
    ||||||||||||||||||||||||| |||||||||||||||||    
T  31110845 tatattgtcaactggatcatttatttagggacggagggagtat 31110887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 17 - 58
Target Start/End: Complemental strand, 4612128 - 4612087
Alignment:
Q  17 tatattgtcaactggatcatttattaagggacggagggagta 58  Q
    ||||||||||||||| ||||||||||||||||||||||||||    
T  4612128 tatattgtcaactgggtcatttattaagggacggagggagta 4612087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 18 - 62
Target Start/End: Complemental strand, 37950985 - 37950941
Alignment:
Q  18 atattgtcaactggatcatttattaagggacggagggagtatcta 62  Q
    |||||||||||| | ||||||||||||||||||||||||||||||    
T  37950985 atattgtcaactaggtcatttattaagggacggagggagtatcta 37950941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 60
Target Start/End: Complemental strand, 47713543 - 47713500
Alignment:
Q  17 tatattgtcaactggatcatttattaagggacggagggagtatc 60  Q
    ||||||||||||||| |||||||||||||||| |||||||||||    
T  47713543 tatattgtcaactgggtcatttattaagggacagagggagtatc 47713500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 58
Target Start/End: Complemental strand, 31466399 - 31466358
Alignment:
Q  17 tatattgtcaactggatcatttattaagggacggagggagta 58  Q
    ||||||||||||| | ||||||||||||||||||||||||||    
T  31466399 tatattgtcaactaggtcatttattaagggacggagggagta 31466358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 58
Target Start/End: Original strand, 36905746 - 36905787
Alignment:
Q  17 tatattgtcaactggatcatttattaagggacggagggagta 58  Q
    ||||||||||||||| ||||||||| ||||||||||||||||    
T  36905746 tatattgtcaactgggtcatttatttagggacggagggagta 36905787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 13 - 58
Target Start/End: Complemental strand, 42086683 - 42086638
Alignment:
Q  13 aatatatattgtcaactggatcatttattaagggacggagggagta 58  Q
    |||| ||||||||||||  |||||||||||||||||||||||||||    
T  42086683 aatacatattgtcaactaaatcatttattaagggacggagggagta 42086638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 58
Target Start/End: Original strand, 36819917 - 36819957
Alignment:
Q  18 atattgtcaactggatcatttattaagggacggagggagta 58  Q
    |||||||||||| | ||||||||||||||||||||||||||    
T  36819917 atattgtcaactaggtcatttattaagggacggagggagta 36819957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 58
Target Start/End: Original strand, 47081201 - 47081241
Alignment:
Q  18 atattgtcaactggatcatttattaagggacggagggagta 58  Q
    |||||||||||| | ||||||||||||||||||||||||||    
T  47081201 atattgtcaactaggtcatttattaagggacggagggagta 47081241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 59
Target Start/End: Complemental strand, 10464156 - 10464114
Alignment:
Q  17 tatattgtcaactggatcatttattaagggacggagggagtat 59  Q
    ||||||||||||| | ||||||||| |||||||||||||||||    
T  10464156 tatattgtcaactaggtcatttattgagggacggagggagtat 10464114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 59
Target Start/End: Original strand, 48531542 - 48531584
Alignment:
Q  17 tatattgtcaactggatcatttattaagggacggagggagtat 59  Q
    ||||||||||||| | |||| ||||||||||||||||||||||    
T  48531542 tatattgtcaactaggtcatctattaagggacggagggagtat 48531584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 59
Target Start/End: Original strand, 2400506 - 2400547
Alignment:
Q  18 atattgtcaactggatcatttattaagggacggagggagtat 59  Q
    ||||||||||||  |||||||||||||||||||||| |||||    
T  2400506 atattgtcaactatatcatttattaagggacggaggaagtat 2400547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 58
Target Start/End: Complemental strand, 23474010 - 23473969
Alignment:
Q  17 tatattgtcaactggatcatttattaagggacggagggagta 58  Q
    ||||||||||||| | ||||||||||||||||||| ||||||    
T  23474010 tatattgtcaactaggtcatttattaagggacggatggagta 23473969  T

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Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 58
Target Start/End: Complemental strand, 34478049 - 34478008
Alignment:
Q  17 tatattgtcaactggatcatttattaagggacggagggagta 58  Q
    ||||||||||||| | ||||||||| ||||||||||||||||    
T  34478049 tatattgtcaactaggtcatttattgagggacggagggagta 34478008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 58
Target Start/End: Complemental strand, 36859248 - 36859208
Alignment:
Q  18 atattgtcaactggatcatttattaagggacggagggagta 58  Q
    ||||||||||||   ||||||||||||||||||||||||||    
T  36859248 atattgtcaactaagtcatttattaagggacggagggagta 36859208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 58
Target Start/End: Complemental strand, 42834332 - 42834292
Alignment:
Q  18 atattgtcaactggatcatttattaagggacggagggagta 58  Q
    |||||||| ||| | ||||||||||||||||||||||||||    
T  42834332 atattgtcgactaggtcatttattaagggacggagggagta 42834292  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 30)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 17 - 58
Target Start/End: Original strand, 1377251 - 1377292
Alignment:
Q  17 tatattgtcaactggatcatttattaagggacggagggagta 58  Q
    |||||||||||||||||||||||||||||||| |||||||||    
T  1377251 tatattgtcaactggatcatttattaagggacagagggagta 1377292  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 17 - 58
Target Start/End: Complemental strand, 5744124 - 5744083
Alignment:
Q  17 tatattgtcaactggatcatttattaagggacggagggagta 58  Q
    ||||||||||||||| ||||||||||||||||||||||||||    
T  5744124 tatattgtcaactgggtcatttattaagggacggagggagta 5744083  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 17 - 59
Target Start/End: Complemental strand, 45198381 - 45198339
Alignment:
Q  17 tatattgtcaactggatcatttattaagggacggagggagtat 59  Q
    ||||||||||||| | |||||||||||||||||||||||||||    
T  45198381 tatattgtcaactaggtcatttattaagggacggagggagtat 45198339  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 59
Target Start/End: Complemental strand, 3442384 - 3442343
Alignment:
Q  18 atattgtcaactggatcatttattaagggacggagggagtat 59  Q
    |||||||||||| | |||||||||||||||||||||||||||    
T  3442384 atattgtcaactaggtcatttattaagggacggagggagtat 3442343  T

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Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 59
Target Start/End: Complemental strand, 3901179 - 3901138
Alignment:
Q  18 atattgtcaactggatcatttattaagggacggagggagtat 59  Q
    |||||||||||| ||||||||||||||||||||||| |||||    
T  3901179 atattgtcaactagatcatttattaagggacggaggaagtat 3901138  T

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Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 59
Target Start/End: Original strand, 5735492 - 5735533
Alignment:
Q  18 atattgtcaactggatcatttattaagggacggagggagtat 59  Q
    |||||||||||| | |||||||||||||||||||||||||||    
T  5735492 atattgtcaactaggtcatttattaagggacggagggagtat 5735533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 58
Target Start/End: Original strand, 6494810 - 6494851
Alignment:
Q  17 tatattgtcaactggatcatttattaagggacggagggagta 58  Q
    ||||||||||||||| ||||||||||||||||||| ||||||    
T  6494810 tatattgtcaactgggtcatttattaagggacggaaggagta 6494851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 58
Target Start/End: Complemental strand, 7738860 - 7738819
Alignment:
Q  17 tatattgtcaactggatcatttattaagggacggagggagta 58  Q
    ||||||||||||| | ||||||||||||||||||||||||||    
T  7738860 tatattgtcaactaggtcatttattaagggacggagggagta 7738819  T

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Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 13 - 58
Target Start/End: Complemental strand, 37688078 - 37688033
Alignment:
Q  13 aatatatattgtcaactggatcatttattaagggacggagggagta 58  Q
    |||| |||||||||||| ||||||||||||||| ||||||||||||    
T  37688078 aatacatattgtcaactagatcatttattaaggaacggagggagta 37688033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 59
Target Start/End: Original strand, 47579507 - 47579548
Alignment:
Q  18 atattgtcaactggatcatttattaagggacggagggagtat 59  Q
    |||||||||||| | |||||||||||||||||||||||||||    
T  47579507 atattgtcaactaggtcatttattaagggacggagggagtat 47579548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 58
Target Start/End: Complemental strand, 21858959 - 21858919
Alignment:
Q  18 atattgtcaactggatcatttattaagggacggagggagta 58  Q
    |||||||||||| ||||||||||||||||||||| ||||||    
T  21858959 atattgtcaactagatcatttattaagggacggatggagta 21858919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 58
Target Start/End: Complemental strand, 21914822 - 21914782
Alignment:
Q  18 atattgtcaactggatcatttattaagggacggagggagta 58  Q
    |||||||||||| ||||||||||||||||||||| ||||||    
T  21914822 atattgtcaactagatcatttattaagggacggatggagta 21914782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 58
Target Start/End: Original strand, 28152212 - 28152252
Alignment:
Q  18 atattgtcaactggatcatttattaagggacggagggagta 58  Q
    |||||||||||| | ||||||||||||||||||||||||||    
T  28152212 atattgtcaactaggtcatttattaagggacggagggagta 28152252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 60
Target Start/End: Original strand, 4264354 - 4264397
Alignment:
Q  17 tatattgtcaactggatcatttattaagggacggagggagtatc 60  Q
    |||||||||||||   ||||||||||||||||||||||||||||    
T  4264354 tatattgtcaactaagtcatttattaagggacggagggagtatc 4264397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 23 - 62
Target Start/End: Complemental strand, 40411445 - 40411406
Alignment:
Q  23 gtcaactggatcatttattaagggacggagggagtatcta 62  Q
    |||||||| |||| ||||||||||||||||||||||||||    
T  40411445 gtcaactgtatcacttattaagggacggagggagtatcta 40411406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 59
Target Start/End: Original strand, 4209579 - 4209621
Alignment:
Q  17 tatattgtcaactggatcatttattaagggacggagggagtat 59  Q
    ||||||||||||| | |||| ||||||||||||||||||||||    
T  4209579 tatattgtcaactaggtcatctattaagggacggagggagtat 4209621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 59
Target Start/End: Complemental strand, 18360014 - 18359972
Alignment:
Q  17 tatattgtcaactggatcatttattaagggacggagggagtat 59  Q
    ||||||||||||| | |||| ||||||||||||||||||||||    
T  18360014 tatattgtcaactaggtcatctattaagggacggagggagtat 18359972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 59
Target Start/End: Original strand, 36602914 - 36602956
Alignment:
Q  17 tatattgtcaactggatcatttattaagggacggagggagtat 59  Q
    ||||||||||||| | |||| ||||||||||||||||||||||    
T  36602914 tatattgtcaactaggtcatctattaagggacggagggagtat 36602956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 58
Target Start/End: Complemental strand, 19652297 - 19652256
Alignment:
Q  17 tatattgtcaactggatcatttattaagggacggagggagta 58  Q
    ||||||||||||| |||||| |||||||||||||||| ||||    
T  19652297 tatattgtcaactagatcatctattaagggacggaggaagta 19652256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 59
Target Start/End: Complemental strand, 26205744 - 26205703
Alignment:
Q  18 atattgtcaactggatcatttattaagggacggagggagtat 59  Q
    ||||||||||||   |||||||||||||||||||||||||||    
T  26205744 atattgtcaactaagtcatttattaagggacggagggagtat 26205703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 58
Target Start/End: Complemental strand, 46212391 - 46212350
Alignment:
Q  17 tatattgtcaactggatcatttattaagggacggagggagta 58  Q
    ||||||||||||||  ||||||||||||||| ||||||||||    
T  46212391 tatattgtcaactgagtcatttattaagggatggagggagta 46212350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 59
Target Start/End: Original strand, 46803853 - 46803894
Alignment:
Q  18 atattgtcaactggatcatttattaagggacggagggagtat 59  Q
    |||||||||||| | |||||||||||||||| ||||||||||    
T  46803853 atattgtcaactaggtcatttattaagggacagagggagtat 46803894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 59
Target Start/End: Complemental strand, 5735306 - 5735270
Alignment:
Q  23 gtcaactggatcatttattaagggacggagggagtat 59  Q
    ||||||| ||||||||||| |||||||||||||||||    
T  5735306 gtcaactagatcatttatttagggacggagggagtat 5735270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 61
Target Start/End: Complemental strand, 19525755 - 19525711
Alignment:
Q  17 tatattgtcaactggatcatttattaagggacggagggagtatct 61  Q
    ||||||||||||| | ||||||||| ||||||||||||| |||||    
T  19525755 tatattgtcaactaggtcatttattgagggacggagggaatatct 19525711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 58
Target Start/End: Complemental strand, 20678628 - 20678588
Alignment:
Q  18 atattgtcaactggatcatttattaagggacggagggagta 58  Q
    |||||||||||| | ||||||||||||||||||||| ||||    
T  20678628 atattgtcaactaggtcatttattaagggacggaggaagta 20678588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 59
Target Start/End: Original strand, 26205930 - 26205966
Alignment:
Q  23 gtcaactggatcatttattaagggacggagggagtat 59  Q
    ||||||| ||||||||||| |||||||||||||||||    
T  26205930 gtcaactagatcatttatttagggacggagggagtat 26205966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 59
Target Start/End: Complemental strand, 28166309 - 28166273
Alignment:
Q  23 gtcaactggatcatttattaagggacggagggagtat 59  Q
    ||||||| ||||||||||| |||||||||||||||||    
T  28166309 gtcaactagatcatttatttagggacggagggagtat 28166273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 59
Target Start/End: Original strand, 39171184 - 39171220
Alignment:
Q  23 gtcaactggatcatttattaagggacggagggagtat 59  Q
    |||||||| |||| |||||||||||||||||||||||    
T  39171184 gtcaactgtatcacttattaagggacggagggagtat 39171220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 59
Target Start/End: Complemental strand, 39376705 - 39376669
Alignment:
Q  23 gtcaactggatcatttattaagggacggagggagtat 59  Q
    |||||||| ||||| ||||||||||||||||||||||    
T  39376705 gtcaactgtatcatgtattaagggacggagggagtat 39376669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 59
Target Start/End: Original strand, 45198566 - 45198602
Alignment:
Q  23 gtcaactggatcatttattaagggacggagggagtat 59  Q
    ||||||| ||||||||||| |||||||||||||||||    
T  45198566 gtcaactagatcatttatttagggacggagggagtat 45198602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 17 - 59
Target Start/End: Complemental strand, 15257 - 15215
Alignment:
Q  17 tatattgtcaactggatcatttattaagggacggagggagtat 59  Q
    ||||||||||||| | |||||||||||||||||||||||||||    
T  15257 tatattgtcaactaggtcatttattaagggacggagggagtat 15215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 55
Target Start/End: Original strand, 117537 - 117579
Alignment:
Q  13 aatatatattgtcaactggatcatttattaagggacggaggga 55  Q
    |||| |||||||||||| | |||||||||||||||||||||||    
T  117537 aatacatattgtcaactaggtcatttattaagggacggaggga 117579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0459 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0459
Description:

Target: scaffold0459; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 50
Target Start/End: Original strand, 12972 - 13005
Alignment:
Q  17 tatattgtcaactggatcatttattaagggacgg 50  Q
    ||||||||||||||| ||||||||||||||||||    
T  12972 tatattgtcaactgggtcatttattaagggacgg 13005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0366 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: scaffold0366
Description:

Target: scaffold0366; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 50
Target Start/End: Original strand, 10613 - 10646
Alignment:
Q  17 tatattgtcaactggatcatttattaagggacgg 50  Q
    ||||||||||||||| ||||||||||||||||||    
T  10613 tatattgtcaactgggtcatttattaagggacgg 10646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0366; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 50
Target Start/End: Original strand, 14279 - 14312
Alignment:
Q  17 tatattgtcaactggatcatttattaagggacgg 50  Q
    ||||||||||||||| ||||||||||||||||||    
T  14279 tatattgtcaactgggtcatttattaagggacgg 14312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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